Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000939

Physical Location & Seq

Genomic Coordinates Forward (+)

30132724 .. 30141095

Gene Structure 8372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033643

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAGACAGGGACTAGCAAAACTTCAGGTGTTGAAGCAAATGAGAAAAACAAGGGAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCTGATAAGAAGGAGGGTAGAGCATTGCCAGCTGGGTTGGTTCCAATTGCAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCAGCCACACCCAAGCCTCAAGGACATGACCCCCTGGATCTTTACAAGCCAGAGGTTTCTTCATGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAATGTTTGGTGGTGGGCGAGTTATACACCCCGGGGAAGTGCTTGAAACGCAGGAAGAAAAAGCTGCTAAGGAGGAACGAACAAGACAATTAGTTGCTGCTTACAACACTAAAATGGGCTTGAACATTGATCCCAAGCTCAGATTGGACTGTGAGAAGACATTAAAGGATGGTGACTCATTGATGAACGTCGGAAAGCTGAAGGAAGCATTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGATTATGACTCCGAAAGCTCGTGCAGACATATACATCAATCTTCCGGCACTTAAGAAGTTGGACTCGATGCTTATTGAAACACTTGATTCAATGGTGGATACTGAGTTTGGGTATGTAGAAGGTGGTAAGGTGGTATATCAAGTATTCCAGGCTGCCAGAACCATCAACGAAAGTGTTCTTCTTGAAATGCCTGTGCCAACCATTATCAGGGATGCACTTCCCAAGATGATGGTCGCATTCTCCTCGCTTTTCTCTAGTTTTATAGTGGAGAGGGTGGGAGAGAGAATTGGCTTAAGTTGCCTATTTGCACTCCTCTTCATTGCACTTCTTAGGACTGCCTATGAAACGGATGAGGATGAGGAAGGTGGTGGCGGTGGGGGTAAGGTTGTGGCGGTCCATTTCGAGGATTCGCCCAATTCGCGGTGTAGTTTAATTAGCGGAGGTCCGGTGCGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

38.17

Weight (kDa)

5.54

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRONE	PF03759	180 - 240	5.5e-17	PRONE (Plant-specific Rop nucleotide exchanger)
PRONE	PF03759	240 - 273	1e-06	PRONE (Plant-specific Rop nucleotide exchanger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780
fragaria_vesca	FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000
malus_domestica	MD02G1293900.v1.1
prunus_persica	Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1
pyrus_communis	pycom02g24770
rosa_chinensis	RchiOBHm_Chr1g0326961 RchiOBHm_Chr2g0113191 RchiOBHm_Chr2g0154951 RchiOBHm_Chr2g0154961 RchiOBHm_Chr4g0400611 RchiOBHm_Chr4g0400621 RchiOBHm_Chr4g0400631 RchiOBHm_Chr7g0221681
rosa_laevigata	RLG00000002138 RLG00000033643 RLG00000033777
rosa_multiflora	Rmu_sc0002824.1_g000035 Rmu_sc0002888.1_g000032 Rmu_sc0003745.1_g000009 Rmu_sc0004762.1_g000007 Rmu_sc0005016.1_g000031
rosa_roxburghii	Rroxscaffold_3G00238120 Rroxscaffold_4G00319400 Rroxscaffold_7G00194290
rosa_rugosa	Rorug07G0203000 Rorug07G0203000
rosa_samantha	Rh2CG244400 Rh2CG512600 Rh2DG248300 Rh4CG299800 Rh5AG377400 Rh5AG377500 Rh5AG465500 Rh5BG484000 Rh5CG508700 Rh6BG168600 Rh7AG343600 Rh7BG333700 Rh7CG361000
rosa_wichuraiana	Rw2G039480 Rw2G044190 Rw3G028860 Rw6G004980 Rw7G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1012
AciI	CCGC	5 cut(s)	963, 983, 1012, 1029, 1042
AclWI	GGATC	2 cut(s)	288, 464
AcuI	CTGAAG	2 cut(s)	36, 560
AfiI	CCNNNNNNNGG	3 cut(s)	798, 994, 1011
AflII	CTTAAG	2 cut(s)	641, 883
AgsI	TTSAA	8 cut(s)	62, 339, 386, 463, 589, 668, 681, 776
AjnI	CCWGG	2 cut(s)	276, 738
AluBI	AGCT	6 cut(s)	11, 158, 404, 478, 538, 608
AluI	AGCT	6 cut(s)	11, 158, 404, 478, 538, 608
AlwI	GGATC	2 cut(s)	288, 464
Ama87I	CYCGRG	1 cut(s)	371
ApeKI	GCWGC	4 cut(s)	245, 404, 437, 743
Asp700I	GAANNNNTTC	1 cut(s)	765
AspS9I	GGNCC	2 cut(s)	985, 1034
AsuC2I	CCSGG	2 cut(s)	372, 373
AsuHPI	GGTGA	1 cut(s)	524
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	985, 1034
AxyI	CCTNAGG	1 cut(s)	204
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	2 cut(s)	38, 503
BbvI	GCAGC	4 cut(s)	257, 391, 424, 730
BccI	CCATC	3 cut(s)	503, 761, 814
BcgI	CGANNNNNNTGC	2 cut(s)	816, 850
BciT130I	CCWGG	2 cut(s)	278, 740
BciVI	GTATCC	1 cut(s)	682
BcnI	CCSGG	2 cut(s)	372, 373
BfaI	CTAG	3 cut(s)	12, 42, 846
BfrI	CTTAAG	2 cut(s)	641, 883
BfuI	GTATCC	1 cut(s)	682
BisI	GCNGC	4 cut(s)	246, 405, 438, 744
BlsI	GCNGC	4 cut(s)	247, 406, 439, 745
Bme1390I	CCNGG	4 cut(s)	278, 372, 373, 740
Bme18I	GGWCC	2 cut(s)	985, 1034
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	985, 1034
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	4 cut(s)	278, 372, 373, 740
BmsI	GCATC	2 cut(s)	648, 793
BpiI	GAAGAC	2 cut(s)	38, 503
BpmI	CTGGAG	1 cut(s)	214
Bpu10I	CCTNAGC	2 cut(s)	189, 408
BpuEI	CTTGAG	1 cut(s)	246
BpuMI	CCSGG	2 cut(s)	372, 373
BsaJI	CCNNGG	4 cut(s)	276, 370, 371, 372
BsaWI	WCCGGW	1 cut(s)	1036
BsaXI	ACNNNNNCTCC	1 cut(s)	1023
Bsc4I	CCNNNNNNNGG	3 cut(s)	798, 994, 1011
Bse1I	ACTGG	1 cut(s)	231
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	2 cut(s)	149, 909
BseBI	CCWGG	2 cut(s)	278, 740
BseDI	CCNNGG	4 cut(s)	276, 370, 371, 372
BseGI	GGATG	4 cut(s)	514, 808, 946, 952
BseLI	CCNNNNNNNGG	3 cut(s)	798, 994, 1011
BseMI	GCAATG	2 cut(s)	149, 909
BseMII	CTCAG	4 cut(s)	195, 203, 493, 684
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	2 cut(s)	823, 893
BseXI	GCAGC	4 cut(s)	257, 391, 424, 730
BseYI	CCCAGC	1 cut(s)	158
BsgI	GTGCAG	2 cut(s)	264, 633
Bsh1236I	CGCG	1 cut(s)	1012
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	372, 635, 1037
BslFI	GGGAC	3 cut(s)	52, 129, 239
BslI	CCNNNNNNNGG	3 cut(s)	798, 994, 1011
BsmFI	GGGAC	3 cut(s)	52, 129, 239
BsmI	GAATGC	1 cut(s)	827
BsoBI	CYCGRG	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	280, 469
BspACI	CCGC	5 cut(s)	963, 983, 1012, 1029, 1042
BspCNI	CTCAG	4 cut(s)	196, 202, 492, 685
BspFNI	CGCG	1 cut(s)	1012
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	2 cut(s)	288, 464
BspTI	CTTAAG	2 cut(s)	641, 883
BsrDI	GCAATG	2 cut(s)	149, 909
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	4 cut(s)	276, 370, 371, 372
BssMI	GATC	2 cut(s)	280, 469
BssSI	CACGAG	1 cut(s)	609
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	2 cut(s)	278, 740
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	911
BstAFI	CTTAAG	2 cut(s)	641, 883
BstC8I	GCNNGC	2 cut(s)	156, 1044
BstDEI	CTNAG	7 cut(s)	189, 204, 408, 479, 693, 920, 1047
BstF5I	GGATG	4 cut(s)	514, 808, 946, 952
BstFNI	CGCG	1 cut(s)	1012
BstKTI	GATC	2 cut(s)	283, 472
BstMBI	GATC	2 cut(s)	280, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 388, 888, 1009
BstNI	CCWGG	2 cut(s)	278, 740
BstSCI	CCNGG	4 cut(s)	276, 370, 371, 738
BstUI	CGCG	1 cut(s)	1012
BstV1I	GCAGC	4 cut(s)	257, 391, 424, 730
BstV2I	GAAGAC	2 cut(s)	38, 503
BstX2I	RGATCY	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	280
Bsu36I	CCTNAGG	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	682
BtsCI	GGATG	4 cut(s)	514, 808, 946, 952
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	156, 1044
Cfr13I	GGNCC	2 cut(s)	985, 1034
Cfr9I	CCCGGG	1 cut(s)	371
CviAII	CATG	3 cut(s)	103, 269, 306
DdeI	CTNAG	7 cut(s)	189, 204, 408, 479, 693, 920, 1047
DpnI	GATC	2 cut(s)	282, 471
DpnII	GATC	2 cut(s)	280, 469
Eam1104I	CTCTTC	1 cut(s)	911
EarI	CTCTTC	1 cut(s)	911
Eco47I	GGWCC	2 cut(s)	985, 1034
Eco57I	CTGAAG	2 cut(s)	36, 560
Eco81I	CCTNAGG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	276, 738
FaeI	CATG	3 cut(s)	106, 272, 309
FaqI	GGGAC	3 cut(s)	52, 129, 239
FatI	CATG	3 cut(s)	102, 268, 305
FauI	CCCGC	1 cut(s)	1035
Fnu4HI	GCNGC	4 cut(s)	246, 405, 438, 744
FokI	GGATG	4 cut(s)	521, 815, 953, 959
Fsp4HI	GCNGC	4 cut(s)	246, 405, 438, 744
FspBI	CTAG	3 cut(s)	12, 42, 846
GluI	GCNGC	4 cut(s)	246, 405, 438, 744
GsaI	CCCAGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	214
HapII	CCGG	3 cut(s)	372, 635, 1037
Hin1II	CATG	3 cut(s)	106, 272, 309
HinfI	GANTC	7 cut(s)	227, 312, 515, 598, 653, 677, 998
HpaII	CCGG	3 cut(s)	372, 635, 1037
HphI	GGTGA	1 cut(s)	524
Hpy188I	TCNGA	3 cut(s)	482, 533, 603
Hpy188III	TCNNGA	2 cut(s)	589, 773
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	4 cut(s)	130, 535, 704, 947
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	6 cut(s)	176, 245, 614, 806, 899, 914
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 388, 888, 1009
HpyF3I	CTNAG	7 cut(s)	189, 204, 408, 479, 693, 920, 1047
HpySE526I	ACGT	1 cut(s)	528
Hsp92II	CATG	3 cut(s)	106, 272, 309
Kzo9I	GATC	2 cut(s)	280, 469
Lsp1109I	GCAGC	4 cut(s)	257, 391, 424, 730
LweI	GCATC	2 cut(s)	648, 793
MaeI	CTAG	3 cut(s)	12, 42, 846
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	512, 579
MalI	GATC	2 cut(s)	282, 471
MboI	GATC	2 cut(s)	280, 469
MboII	GAAGA	8 cut(s)	40, 43, 294, 407, 508, 623, 761, 898
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	7 cut(s)	86, 171, 235, 428, 876, 1006, 1023
MlyI	GAGTC	5 cut(s)	221, 321, 509, 592, 647
MmeI	TCCRAC	2 cut(s)	511, 630
MroXI	GAANNNNTTC	1 cut(s)	765
MseI	TTAA	4 cut(s)	503, 642, 884, 1022
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	158
MspCI	CTTAAG	2 cut(s)	641, 883
MspI	CCGG	3 cut(s)	372, 635, 1037
MspR9I	CCNGG	4 cut(s)	278, 372, 373, 740
MunI	CAATTG	1 cut(s)	171
Mva1269I	GAATGC	1 cut(s)	827
MvaI	CCWGG	2 cut(s)	278, 740
MvnI	CGCG	1 cut(s)	1012
MwoI	GCNNNNNNNGC	4 cut(s)	155, 388, 888, 1009
NciI	CCSGG	2 cut(s)	372, 373
NdeII	GATC	2 cut(s)	280, 469
NlaIII	CATG	3 cut(s)	106, 272, 309
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	512
PctI	GAATGC	1 cut(s)	827
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	2 cut(s)	677, 998
PkrI	GCNGC	4 cut(s)	247, 406, 439, 745
PleI	GAGTC	5 cut(s)	221, 320, 509, 592, 647
PpsI	GAGTC	5 cut(s)	221, 320, 509, 592, 647
Psp6I	CCWGG	2 cut(s)	276, 738
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	2 cut(s)	276, 738
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	985, 1034
PsuI	RGATCY	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	4 cut(s)	503, 642, 884, 1022
SatI	GCNGC	4 cut(s)	246, 405, 438, 744
Sau3AI	GATC	2 cut(s)	280, 469
Sau96I	GGNCC	2 cut(s)	985, 1034
SchI	GAGTC	5 cut(s)	221, 321, 509, 592, 647
ScrFI	CCNGG	4 cut(s)	278, 372, 373, 740
SfaNI	GCATC	2 cut(s)	648, 793
SinI	GGWCC	2 cut(s)	985, 1034
SmaI	CCCGGG	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	3 cut(s)	261, 641, 883
SmoI	CTYRAG	3 cut(s)	261, 641, 883
Sse9I	AATT	7 cut(s)	86, 171, 235, 428, 876, 1006, 1023
SsiI	CCGC	5 cut(s)	963, 983, 1012, 1029, 1042
SspMI	CTAG	3 cut(s)	12, 42, 846
StyD4I	CCNGG	4 cut(s)	276, 370, 371, 738
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	3 cut(s)	98, 656, 993
TasI	AATT	7 cut(s)	86, 171, 235, 428, 876, 1006, 1023
TfiI	GAWTC	2 cut(s)	677, 998
Tru1I	TTAA	4 cut(s)	503, 642, 884, 1022
Tru9I	TTAA	4 cut(s)	503, 642, 884, 1022
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	4 cut(s)	245, 404, 437, 743
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	4 cut(s)	294, 539, 898, 948
TspGWI	ACGGA	1 cut(s)	953
TspMI	CCCGGG	1 cut(s)	371
TspRI	CASTG	1 cut(s)	99
Vha464I	CTTAAG	2 cut(s)	641, 883
VpaK11BI	GGWCC	2 cut(s)	985, 1034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XmaI	CCCGGG	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	3 cut(s)	12, 42, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.