Rh2DG248300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000939
Physical Location & Seq
Forward (+)
25550342 .. 25558694
8353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG248300.1

Sequence Viewer

Length: 1137 bp
ATGGAAAGAGCTAGAGAGTATAAGCAGAAGAAGACAGGGACTAGCAAAACTTCAGGTGTTGAAGCAAATGAGAAAAACAAGGGAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGTTGATAAGAAGGAGGGTAGAGCACTGCCAGCTGGGTTGGTTCCAATCGTAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCAGCCACACCCAAGCCTCAAGGAGATGACCCCCTGGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCGAGACCCAATGACATTTCAAAAATGTTTGGTGGTGGGCGAGTTATACACCCCGGGGAAGTGCTTGAAACACAGGAAGAAAAAGCTGCTAAGGAGGAACGAACAAGACAATTAGTTGCTGCTTACAACACTAAAATGGGCTTGAACATTGATCCCAAGCTCAGATTGGACTTAGAACAATATCGTTTCCTAAAATTGATTACTTCTATGCAGACATTAAAGGATGGTGACTCATTGATGAACGTCGGAAAGCTGAAGGAAGCATTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGGTACCAGCTACTGGACTCTCTGATATAGCAAAGAATAAGTTACTTAAACAGGGTAAGGTGGTATATCAGGTATTCAAGGCGGCCAGAACCATCAACGAAAGTGTTCTTCTTGAAATGCCTGTGCCAACCATTATCAGGGATGCACTTCCCAAGTCGCAAATTTCTGCTTTTAAACTTGAAGATGTTATTGCTCAACAAGTATTTGTGCTCCTGATAGAGAAAATAAATGCGAAAAGGTTGAATAGAGGGGATGTTGATTCAAACACTCAGCAGCGGTCAACTGAAGCAGTAGGGCATTCTAATTCAATTGTTGCATACCACATATTTCTCGGCATCAAAGATACTGGACAAAGCAATGGTGCTGTGAGAATGGCTCTAATCTATGCTTTGAAGGCCATAGAAACTCGAAAAGAATTATACGATAAGTATTTTGTTGCTAAAGATAGTCAGAAGACTGATATGTGGACAAACGTGTGGTCATCGGATACTGCAGACTTCAGGGAATATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

42.16

Weight (kDa)

9.12

Isoelectric Point (pI)

27.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 208 - 273 6.3e-15 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 625
AccB1I GGYRCC 1 cut(s) 625
AccB7I CCANNNNNTGG 1 cut(s) 635
AccI GTMKAC 1 cut(s) 177
AciI CCGC 2 cut(s) 704, 898
AclWI GGATC 2 cut(s) 288, 464
AcoI YGGCCR 1 cut(s) 705
AcsI RAATTY 1 cut(s) 783
AcuI CTGAAG 4 cut(s) 36, 593, 927, 1105
AfaI GTAC 1 cut(s) 627
AfiI CCNNNNNNNGG 2 cut(s) 635, 759
AflIII ACRYGT 1 cut(s) 1095
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
AluBI AGCT 6 cut(s) 11, 158, 404, 478, 571, 632
AluI AGCT 6 cut(s) 11, 158, 404, 478, 571, 632
Alw21I GWGCWC 2 cut(s) 151, 834
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 2 cut(s) 288, 464
AlwNI CAGNNNCTG 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 2 cut(s) 705, 1017
ApeKI GCWGC 4 cut(s) 245, 404, 437, 895
ApoI RAATTY 1 cut(s) 783
ArsI GACNNNNNNTTYG 2 cut(s) 1085, 1117
Asp700I GAANNNNTTC 1 cut(s) 726
Asp718I GGTACC 1 cut(s) 625
AsuC2I CCSGG 2 cut(s) 372, 373
AsuHPI GGTGA 1 cut(s) 557
AvaI CYCGRG 1 cut(s) 371
AxyI CCTNAGG 1 cut(s) 204
BanI GGYRCC 1 cut(s) 625
BbsI GAAGAC 2 cut(s) 38, 1082
Bbv12I GWGCWC 2 cut(s) 151, 834
BbvI GCAGC 4 cut(s) 257, 391, 424, 907
BccI CCATC 2 cut(s) 536, 722
BciT130I CCWGG 1 cut(s) 278
BciVI GTATCC 1 cut(s) 1102
BcnI CCSGG 2 cut(s) 372, 373
BcoDI GTCTC 1 cut(s) 316
BfaI CTAG 2 cut(s) 12, 42
BfmI CTRYAG 1 cut(s) 1113
BfuI GTATCC 1 cut(s) 1102
BisI GCNGC 5 cut(s) 246, 405, 438, 705, 896
BlsI GCNGC 5 cut(s) 247, 406, 439, 706, 897
Bme1390I CCNGG 3 cut(s) 278, 372, 373
BmeT110I CYCGRG 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 168, 627
BmrFI CCNGG 3 cut(s) 278, 372, 373
BmsI GCATC 2 cut(s) 754, 966
BpiI GAAGAC 2 cut(s) 38, 1082
BplI GAGNNNNNCTC 2 cut(s) 982, 1014
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 2 cut(s) 189, 408
BpuEI CTTGAG 1 cut(s) 246
BpuMI CCSGG 2 cut(s) 372, 373
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 4 cut(s) 276, 370, 371, 372
Bsc4I CCNNNNNNNGG 2 cut(s) 635, 759
Bse1I ACTGG 3 cut(s) 231, 640, 973
Bse21I CCTNAGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 985
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 4 cut(s) 276, 370, 371, 372
BseGI GGATG 3 cut(s) 547, 769, 880
BseLI CCNNNNNNNGG 2 cut(s) 635, 759
BseMI GCAATG 1 cut(s) 985
BseMII CTCAG 4 cut(s) 195, 203, 493, 905
BseNI ACTGG 3 cut(s) 231, 640, 973
BseXI GCAGC 4 cut(s) 257, 391, 424, 907
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 264
BshFI GGCC 2 cut(s) 707, 1019
BshNI GGYRCC 1 cut(s) 625
BsiHKAI GWGCWC 2 cut(s) 151, 834
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 3 cut(s) 52, 129, 239
BslI CCNNNNNNNGG 2 cut(s) 635, 759
BsmAI GTCTC 1 cut(s) 316
BsmFI GGGAC 3 cut(s) 52, 129, 239
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 2 cut(s) 707, 1019
Bso31I GGTCTC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 151, 834
Bsp143I GATC 2 cut(s) 280, 469
BspACI CCGC 2 cut(s) 704, 898
BspANI GGCC 2 cut(s) 707, 1019
BspCNI CTCAG 4 cut(s) 196, 202, 492, 904
BspLI GGNNCC 2 cut(s) 168, 627
BspMAI CTGCAG 1 cut(s) 1117
BspPI GGATC 2 cut(s) 288, 464
BspT107I GGYRCC 1 cut(s) 625
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 985
BsrI ACTGG 3 cut(s) 231, 640, 973
BssECI CCNNGG 4 cut(s) 276, 370, 371, 372
BssMI GATC 2 cut(s) 280, 469
Bst2UI CCWGG 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 6 cut(s) 189, 204, 408, 479, 490, 891
BstF5I GGATG 3 cut(s) 547, 769, 880
BstKTI GATC 2 cut(s) 283, 472
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 2 cut(s) 280, 469
BstMWI GCNNNNNNNGC 2 cut(s) 155, 1016
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 276, 370, 371
BstSFI CTRYAG 1 cut(s) 1113
BstV1I GCAGC 4 cut(s) 257, 391, 424, 907
BstV2I GAAGAC 2 cut(s) 38, 1082
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
Bsu36I CCTNAGG 1 cut(s) 204
BsuI GTATCC 1 cut(s) 1102
BsuRI GGCC 2 cut(s) 707, 1019
BtsCI GGATG 3 cut(s) 547, 769, 880
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 2 cut(s) 99, 149
Cac8I GCNNGC 1 cut(s) 156
CaiI CAGNNNCTG 1 cut(s) 635
Cfr9I CCCGGG 1 cut(s) 371
Csp6I GTAC 1 cut(s) 626
CviAII CATG 2 cut(s) 103, 306
CviQI GTAC 1 cut(s) 626
DdeI CTNAG 6 cut(s) 189, 204, 408, 479, 490, 891
DpnI GATC 2 cut(s) 282, 471
DpnII GATC 2 cut(s) 280, 469
DraI TTTAAA 1 cut(s) 796
EaeI YGGCCR 1 cut(s) 705
Eco31I GGTCTC 1 cut(s) 316
Eco57I CTGAAG 4 cut(s) 36, 593, 927, 1105
Eco81I CCTNAGG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 106, 309
FaqI GGGAC 3 cut(s) 52, 129, 239
FatI CATG 2 cut(s) 102, 305
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 5 cut(s) 246, 405, 438, 705, 896
FokI GGATG 3 cut(s) 554, 776, 887
Fsp4HI GCNGC 5 cut(s) 246, 405, 438, 705, 896
FspBI CTAG 2 cut(s) 12, 42
GluI GCNGC 5 cut(s) 246, 405, 438, 705, 896
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 214
HaeIII GGCC 2 cut(s) 707, 1019
HapII CCGG 1 cut(s) 372
Hin1II CATG 2 cut(s) 106, 309
HincII GTYRAC 1 cut(s) 903
HindII GTYRAC 1 cut(s) 903
HinfI GANTC 5 cut(s) 227, 312, 548, 639, 881
HpaII CCGG 1 cut(s) 372
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 3 cut(s) 178, 903, 1089
Hpy188I TCNGA 6 cut(s) 321, 482, 566, 646, 1074, 1108
Hpy188III TCNNGA 2 cut(s) 734, 835
Hpy8I GTNNAC 3 cut(s) 178, 903, 1089
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 3 cut(s) 130, 568, 1009
HpyCH4IV ACGT 2 cut(s) 561, 1095
HpyCH4V TGCA 5 cut(s) 245, 529, 767, 938, 1115
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 1016
HpyF3I CTNAG 6 cut(s) 189, 204, 408, 479, 490, 891
HpySE526I ACGT 2 cut(s) 561, 1095
Hsp92II CATG 2 cut(s) 106, 309
KpnI GGTACC 1 cut(s) 629
Kzo9I GATC 2 cut(s) 280, 469
LmnI GCTCC 1 cut(s) 837
Lsp1109I GCAGC 4 cut(s) 257, 391, 424, 907
LweI GCATC 2 cut(s) 754, 966
MaeI CTAG 2 cut(s) 12, 42
MaeII ACGT 2 cut(s) 561, 1095
MaeIII GTNAC 3 cut(s) 545, 612, 663
MalI GATC 2 cut(s) 282, 471
MboI GATC 2 cut(s) 280, 469
MboII GAAGA 7 cut(s) 40, 43, 294, 407, 722, 815, 1087
MfeI CAATTG 1 cut(s) 930
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 2 cut(s) 151, 834
MluCI AATT 8 cut(s) 86, 235, 428, 512, 783, 925, 930, 1037
MlyI GAGTC 4 cut(s) 221, 321, 542, 633
MmeI TCCRAC 1 cut(s) 544
MnlI CCTC 5 cut(s) 133, 199, 270, 406, 863
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 3 cut(s) 536, 669, 795
MslI CAYNNNNRTG 1 cut(s) 452
MspA1I CMGCKG 2 cut(s) 158, 898
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 3 cut(s) 278, 372, 373
MunI CAATTG 1 cut(s) 930
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 155, 1016
NciI CCSGG 2 cut(s) 372, 373
NdeII GATC 2 cut(s) 280, 469
NlaIII CATG 2 cut(s) 106, 309
NlaIV GGNNCC 2 cut(s) 168, 627
NmeAIII GCCGAG 1 cut(s) 933
NmuCI GTSAC 1 cut(s) 545
PctI GAATGC 1 cut(s) 919
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 1 cut(s) 881
PflMI CCANNNNNTGG 1 cut(s) 635
PkrI GCNGC 5 cut(s) 247, 406, 439, 706, 897
PleI GAGTC 4 cut(s) 221, 320, 542, 633
PpsI GAGTC 4 cut(s) 221, 320, 542, 633
Psp6I CCWGG 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 168, 627
PstI CTGCAG 1 cut(s) 1117
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 627
RsaNI GTAC 1 cut(s) 626
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 3 cut(s) 536, 669, 795
SatI GCNGC 5 cut(s) 246, 405, 438, 705, 896
Sau3AI GATC 2 cut(s) 280, 469
SchI GAGTC 4 cut(s) 221, 321, 542, 633
ScrFI CCNGG 3 cut(s) 278, 372, 373
SduI GDGCHC 2 cut(s) 151, 834
SfaNI GCATC 2 cut(s) 754, 966
SfcI CTRYAG 1 cut(s) 1113
SmaI CCCGGG 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
Sse9I AATT 8 cut(s) 86, 235, 428, 512, 783, 925, 930, 1037
SsiI CCGC 2 cut(s) 704, 898
SspMI CTAG 2 cut(s) 12, 42
StyD4I CCNGG 3 cut(s) 276, 370, 371
TaiI ACGT 2 cut(s) 564, 1098
TaqI TCGA 2 cut(s) 98, 1030
TasI AATT 8 cut(s) 86, 235, 428, 512, 783, 925, 930, 1037
TauI GCSGC 1 cut(s) 707
TfiI GAWTC 1 cut(s) 881
Tru1I TTAA 3 cut(s) 536, 669, 795
Tru9I TTAA 3 cut(s) 536, 669, 795
TscAI CASTG 2 cut(s) 99, 156
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 4 cut(s) 245, 404, 437, 895
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 2 cut(s) 294, 572
TspMI CCCGGG 1 cut(s) 371
TspRI CASTG 2 cut(s) 99, 156
Van91I CCANNNNNTGG 1 cut(s) 635
XapI RAATTY 1 cut(s) 783
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XmaI CCCGGG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 2 cut(s) 12, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.