Rh6BG168600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000939
Physical Location & Seq
Reverse (-)
27749372 .. 27750000
629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG168600.1

Sequence Viewer

Length: 366 bp
ATGGAGAGAGCTAGAAAGTATAAGCAGAAGAAGACAGGGACTAGCAAAACTTCAGGTGTTGAAGCAAATGAGAAAAACAAGGGAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCTGATAAGAAGGAGGGTAGAGCAATCGCAGACGATTTTGCTCAGGGCAACTTGCTTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTTGGTGCAGCCACACCCAAGCCTCAAGGAGATGACCCCCTGGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAACGTTTGGTGGTGGGCGAGTTATACACCCCGGGGAAGTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.01

Weight (kDa)

9.16

Isoelectric Point (pI)

14.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 323
AclWI GGATC 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 36
AgsI TTSAA 2 cut(s) 62, 318
AjnI CCWGG 1 cut(s) 255
AjuI GAANNNNNNNTTGG 2 cut(s) 265, 297
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AlwI GGATC 1 cut(s) 267
Ama87I CYCGRG 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 224
AsuC2I CCSGG 2 cut(s) 351, 352
AvaI CYCGRG 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 257
BcnI CCSGG 2 cut(s) 351, 352
BfaI CTAG 2 cut(s) 12, 42
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 3 cut(s) 257, 351, 352
BmeT110I CYCGRG 1 cut(s) 350
BmrFI CCNGG 3 cut(s) 257, 351, 352
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 2 cut(s) 203, 225
BpuMI CCSGG 2 cut(s) 351, 352
BsaJI CCNNGG 4 cut(s) 255, 349, 350, 351
Bse1I ACTGG 1 cut(s) 210
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 4 cut(s) 255, 349, 350, 351
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 236
BsgI GTGCAG 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 3 cut(s) 52, 129, 218
BsmFI GGGAC 3 cut(s) 52, 129, 218
BsoBI CYCGRG 1 cut(s) 350
Bsp143I GATC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 181
BspPI GGATC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 4 cut(s) 255, 349, 350, 351
BssMI GATC 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 168
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 3 cut(s) 255, 349, 350
BstV1I GCAGC 1 cut(s) 236
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 99
Cfr9I CCCGGG 1 cut(s) 350
CviAII CATG 2 cut(s) 103, 285
CviJI RGCY 4 cut(s) 11, 227, 238, 271
CviKI_1 RGCY 4 cut(s) 11, 227, 238, 271
DdeI CTNAG 1 cut(s) 168
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 255
FaeI CATG 2 cut(s) 106, 288
FaiI YATR 4 cut(s) 21, 104, 286, 344
FaqI GGGAC 3 cut(s) 52, 129, 218
FatI CATG 2 cut(s) 102, 284
Fnu4HI GCNGC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 2 cut(s) 12, 42
GluI GCNGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 193
HapII CCGG 1 cut(s) 351
Hin1II CATG 2 cut(s) 106, 288
HinfI GANTC 2 cut(s) 206, 291
HpaII CCGG 1 cut(s) 351
HpyAV CCTTC 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 2 cut(s) 106, 288
Kzo9I GATC 1 cut(s) 259
LpnPI CCDG 7 cut(s) 21, 39, 155, 223, 242, 269, 313
Lsp1109I GCAGC 1 cut(s) 236
MaeI CTAG 2 cut(s) 12, 42
MaeII ACGT 1 cut(s) 323
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 3 cut(s) 40, 43, 273
MflI RGATCY 1 cut(s) 259
MluCI AATT 2 cut(s) 86, 214
MlyI GAGTC 2 cut(s) 200, 300
MnlI CCTC 3 cut(s) 133, 178, 249
MseI TTAA 1 cut(s) 364
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 3 cut(s) 257, 351, 352
MvaI CCWGG 1 cut(s) 257
NciI CCSGG 2 cut(s) 351, 352
NdeII GATC 1 cut(s) 259
NlaIII CATG 2 cut(s) 106, 288
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 2 cut(s) 200, 299
PpsI GAGTC 2 cut(s) 200, 299
Psp1406I AACGTT 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 259
SaqAI TTAA 1 cut(s) 364
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 1 cut(s) 259
SchI GAGTC 2 cut(s) 200, 300
ScrFI CCNGG 3 cut(s) 257, 351, 352
SetI ASST 5 cut(s) 13, 58, 189, 279, 326
SmaI CCCGGG 1 cut(s) 352
SmlI CTYRAG 2 cut(s) 182, 240
SmoI CTYRAG 2 cut(s) 182, 240
Sse9I AATT 2 cut(s) 86, 214
SspMI CTAG 2 cut(s) 12, 42
StyD4I CCNGG 3 cut(s) 255, 349, 350
TaiI ACGT 1 cut(s) 326
TaqI TCGA 1 cut(s) 98
TasI AATT 2 cut(s) 86, 214
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TscAI CASTG 1 cut(s) 99
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 273
TspMI CCCGGG 1 cut(s) 350
TspRI CASTG 1 cut(s) 99
XmaI CCCGGG 1 cut(s) 350
XspI CTAG 2 cut(s) 12, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.