Rw2G044190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000939
Physical Location & Seq
Forward (+)
70882574 .. 70885825
3252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G044190.1

Sequence Viewer

Length: 807 bp
ATGGAGAGAGCTAGAGAGTATATGCAGAAGAAGACAGGGACTAGCAAAACTTCAGGTAATGCTCGAAAAACAAGGGAAAATTGTCAGTGTCGCATGGATTTTGTGGGACTTGGGTTTGCTGATAAGAAGGAAGGTAGAGCACTGCCAGCTGGGTTGGTTCCAATCGCAGATGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCAGCCACACCCAAGCCTCAAGGAGATGACCCCCTGGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCTAGACCCAGTGACATTTCAAAAACGGTAATGATATATATTATACACCCCGGGGAAGTGCTTGAAACACAGGAAGAAAAAGCTGTTAAGGAGGAAGGAACAAGACAATTAGTTGCTGCTTACAACACAAAAATGGGCTTGAACATTGATCCCAAGCTTAGATTGGACTGTGAGAAGATATTAAAGGAAGGTGACTCATTGATGAACGTCGGAAAGCTGAAGGAAGCATTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGAATAAGTTACTTAAACAGGGTAAGGTGGTATATCAAGTATTCAAGGCTGCCAGAACCATCAACGAAATCCCATTTCAGTTAGACGTTCTAGTATTAGTGCTTAGAATGGTGATCGTGGCTTTTTCCTTTTTTTCAGTCTTCTTTAATCAATCCTTGCATTTTTCATTGTCCAATGTTGTGTTATTGTTTACTGTAATTCTTTTGGTAGATATTTTTTTTTTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

30.22

Weight (kDa)

8.79

Isoelectric Point (pI)

22.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 279, 452
AcuI CTGAAG 2 cut(s) 36, 548
AgsI TTSAA 5 cut(s) 330, 374, 451, 577, 622
AjnI CCWGG 1 cut(s) 267
AjuI GAANNNNNNNTTGG 2 cut(s) 277, 309
AluBI AGCT 5 cut(s) 11, 149, 392, 466, 526
AluI AGCT 5 cut(s) 11, 149, 392, 466, 526
Alw21I GWGCWC 1 cut(s) 142
AlwI GGATC 2 cut(s) 279, 452
Ama87I CYCGRG 1 cut(s) 359
ApeKI GCWGC 3 cut(s) 236, 425, 626
AsuC2I CCSGG 2 cut(s) 360, 361
AsuHPI GGTGA 2 cut(s) 512, 700
AvaI CYCGRG 1 cut(s) 359
AxyI CCTNAGG 1 cut(s) 195
BbsI GAAGAC 2 cut(s) 38, 709
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 3 cut(s) 248, 412, 613
BccI CCATC 1 cut(s) 644
BciT130I CCWGG 1 cut(s) 269
BcnI CCSGG 2 cut(s) 360, 361
BfaI CTAG 4 cut(s) 12, 42, 312, 668
BisI GCNGC 3 cut(s) 237, 426, 627
BlsI GCNGC 3 cut(s) 238, 427, 628
Bme1390I CCNGG 3 cut(s) 269, 360, 361
BmeT110I CYCGRG 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 3 cut(s) 269, 360, 361
BmrI ACTGGG 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 312
BpiI GAAGAC 2 cut(s) 38, 709
BpmI CTGGAG 1 cut(s) 205
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 237
BpuMI CCSGG 2 cut(s) 360, 361
BsaJI CCNNGG 4 cut(s) 267, 358, 359, 360
Bse1I ACTGG 2 cut(s) 222, 318
Bse21I CCTNAGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 4 cut(s) 267, 358, 359, 360
BseMII CTCAG 2 cut(s) 186, 194
BseNI ACTGG 2 cut(s) 222, 318
BseXI GCAGC 3 cut(s) 248, 412, 613
BseYI CCCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 1 cut(s) 360
BslFI GGGAC 3 cut(s) 52, 120, 230
BsmFI GGGAC 3 cut(s) 52, 120, 230
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 3 cut(s) 271, 457, 690
BspCNI CTCAG 2 cut(s) 187, 193
BspLI GGNNCC 1 cut(s) 159
BspPI GGATC 2 cut(s) 279, 452
BsrI ACTGG 2 cut(s) 222, 318
BssECI CCNNGG 4 cut(s) 267, 358, 359, 360
BssMI GATC 3 cut(s) 271, 457, 690
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 3 cut(s) 337, 479, 772
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 4 cut(s) 180, 195, 467, 680
BstKTI GATC 3 cut(s) 274, 460, 693
BstMBI GATC 3 cut(s) 271, 457, 690
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 3 cut(s) 267, 358, 359
BstV1I GCAGC 3 cut(s) 248, 412, 613
BstV2I GAAGAC 2 cut(s) 38, 709
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
Bsu36I CCTNAGG 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 3 cut(s) 92, 140, 325
Cac8I GCNNGC 1 cut(s) 147
Cfr9I CCCGGG 1 cut(s) 359
CviAII CATG 2 cut(s) 94, 297
DdeI CTNAG 4 cut(s) 180, 195, 467, 680
DpnI GATC 3 cut(s) 273, 459, 692
DpnII GATC 3 cut(s) 271, 457, 690
Eco57I CTGAAG 2 cut(s) 36, 548
Eco81I CCTNAGG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 267
FaeI CATG 2 cut(s) 97, 300
FaqI GGGAC 3 cut(s) 52, 120, 230
FatI CATG 2 cut(s) 93, 296
Fnu4HI GCNGC 3 cut(s) 237, 426, 627
Fsp4HI GCNGC 3 cut(s) 237, 426, 627
FspBI CTAG 4 cut(s) 12, 42, 312, 668
GluI GCNGC 3 cut(s) 237, 426, 627
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 205
HapII CCGG 1 cut(s) 360
Hin1II CATG 2 cut(s) 97, 300
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 3 cut(s) 218, 303, 503
HpaII CCGG 1 cut(s) 360
HphI GGTGA 2 cut(s) 512, 700
Hpy166II GTNNAC 1 cut(s) 768
Hpy188I TCNGA 1 cut(s) 521
Hpy188III TCNNGA 1 cut(s) 577
Hpy8I GTNNAC 1 cut(s) 768
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 5 cut(s) 121, 125, 398, 491, 523
HpyCH4III ACNGT 3 cut(s) 337, 479, 772
HpyCH4IV ACGT 2 cut(s) 516, 663
HpyCH4V TGCA 3 cut(s) 25, 236, 736
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 4 cut(s) 180, 195, 467, 680
HpySE526I ACGT 2 cut(s) 516, 663
Hsp92II CATG 2 cut(s) 97, 300
Kzo9I GATC 3 cut(s) 271, 457, 690
Lsp1109I GCAGC 3 cut(s) 248, 412, 613
MaeI CTAG 4 cut(s) 12, 42, 312, 668
MaeII ACGT 2 cut(s) 516, 663
MaeIII GTNAC 4 cut(s) 320, 500, 567, 585
MalI GATC 3 cut(s) 273, 459, 692
MboI GATC 3 cut(s) 271, 457, 690
MboII GAAGA 6 cut(s) 40, 43, 285, 395, 496, 709
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 4 cut(s) 79, 226, 416, 774
MlyI GAGTC 3 cut(s) 212, 312, 497
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 3 cut(s) 190, 261, 394
MseI TTAA 4 cut(s) 396, 491, 591, 723
MslI CAYNNNNRTG 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 3 cut(s) 269, 360, 361
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 146
NciI CCSGG 2 cut(s) 360, 361
NdeII GATC 3 cut(s) 271, 457, 690
NlaIII CATG 2 cut(s) 97, 300
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 2 cut(s) 320, 500
PkrI GCNGC 3 cut(s) 238, 427, 628
PleI GAGTC 3 cut(s) 212, 311, 497
PpsI GAGTC 3 cut(s) 212, 311, 497
Psp6I CCWGG 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 159
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 440
SaqAI TTAA 4 cut(s) 396, 491, 591, 723
SatI GCNGC 3 cut(s) 237, 426, 627
Sau3AI GATC 3 cut(s) 271, 457, 690
SchI GAGTC 3 cut(s) 212, 312, 497
ScrFI CCNGG 3 cut(s) 269, 360, 361
SduI GDGCHC 1 cut(s) 142
SmaI CCCGGG 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
Sse9I AATT 4 cut(s) 79, 226, 416, 774
SspMI CTAG 4 cut(s) 12, 42, 312, 668
StyD4I CCNGG 3 cut(s) 267, 358, 359
TaaI ACNGT 3 cut(s) 337, 479, 772
TaiI ACGT 2 cut(s) 519, 666
TaqI TCGA 1 cut(s) 64
TasI AATT 4 cut(s) 79, 226, 416, 774
Tru1I TTAA 4 cut(s) 396, 491, 591, 723
Tru9I TTAA 4 cut(s) 396, 491, 591, 723
TscAI CASTG 3 cut(s) 92, 147, 325
TseFI GTSAC 2 cut(s) 320, 500
TseI GCWGC 3 cut(s) 236, 425, 626
Tsp45I GTSAC 2 cut(s) 320, 500
TspDTI ATGAA 3 cut(s) 285, 527, 732
TspMI CCCGGG 1 cut(s) 359
TspRI CASTG 3 cut(s) 92, 147, 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XmaI CCCGGG 1 cut(s) 359
XspI CTAG 4 cut(s) 12, 42, 312, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.