Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000939

Physical Location & Seq

Genomic Coordinates Forward (+)

42759390 .. 42764102

Gene Structure 4713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19836

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCACTGGCAATGGCTTGCCTTCAACCTTCCTCATGGCTCTCTTCCCGACCCACTCTCTTTCCCTCCTCCTCAAAGCCCCACCCTTCAAAGCTCTTCTTTTCTCTCAACCCACCCAATCCCAATCCCAATGCCGAATCCGAAACCACGACGTCCCCAGTCGACCCGCCAAGTCCTGGGAATGCCGAATTGCCTGCTGCTGTTAAGACTGCAATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAGAAAGGGACTAACAAATCTTCAGGTGTTGAAGCAAATGAGAAAAGCAAGGCAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCCGATAAGAAGGAGGGTAGAGCACTGCCAGCTGGGTTGGTTCCAATCGCAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCAGCCACACCCAAGCCTCAAGGAGATGACCCCCCGGATGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAAGGTTTGGTGGTGGGCGAGTTATACGCCCCGGGGAAGTGCTTGAAACACAGGAAGAAAAAGCTGCTAAAGAGGAACGAACAAGACAATTAGTTGCTGCTTACAACACTAAAATGGGCTTGAACATTGATCCCAAGCTCAGATTGGACTGTGAGAAGACATTAAAGGATGGTGACTCATTGATGAACGTCGGAAAGCTGAAGGAAGCATTATCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGAGTGAGCTTCATGGGGTGGCTGCTTTACAGTGGTCTATTTGTCAAGATTCCCTGACTAGGACAAAAGAAGCTCAAAATATGTATGAGAGGCTTCAATCCCACCCAACTGCTAGAGTAAGCAAGAAAGCGAGGCAATTTATGTTCAGCTTTCAGGCCATGGAAATGATGAAGCTTACAAGGAGTTCACCTTGGAGGAACACTGGCTACCAGAATTTTTTTGAAGCTTTCATTGACAACAAATCTGACTACGTGCTGGAAGATGGTGAAGTCGAAGTAGGTACTCTGAGTCAGATTCTCCCTTATATTTTTTTCCTTGTTTCTCCGATTTTTATAGTGTTACTCATTGCCATACAAAAGAGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

43.23

Weight (kDa)

8.84

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780
fragaria_vesca	FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000
malus_domestica	MD02G1293900.v1.1
prunus_persica	Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1
pyrus_communis	pycom02g24770
rosa_chinensis	RchiOBHm_Chr1g0326961 RchiOBHm_Chr2g0113191 RchiOBHm_Chr2g0154951 RchiOBHm_Chr2g0154961 RchiOBHm_Chr4g0400611 RchiOBHm_Chr4g0400621 RchiOBHm_Chr4g0400631 RchiOBHm_Chr7g0221681
rosa_laevigata	RLG00000002138 RLG00000033643 RLG00000033777
rosa_multiflora	Rmu_sc0002824.1_g000035 Rmu_sc0002888.1_g000032 Rmu_sc0003745.1_g000009 Rmu_sc0004762.1_g000007 Rmu_sc0005016.1_g000031
rosa_roxburghii	Rroxscaffold_3G00238120 Rroxscaffold_4G00319400 Rroxscaffold_7G00194290
rosa_rugosa	Rorug07G0203000 Rorug07G0203000
rosa_samantha	Rh2CG244400 Rh2CG512600 Rh2DG248300 Rh4CG299800 Rh5AG377400 Rh5AG377500 Rh5AG465500 Rh5BG484000 Rh5CG508700 Rh6BG168600 Rh7AG343600 Rh7BG333700 Rh7CG361000
rosa_wichuraiana	Rw2G039480 Rw2G044190 Rw3G028860 Rw6G004980 Rw7G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	155
AccB7I	CCANNNNNTGG	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	680
AcsI	RAATTY	1 cut(s)	1018
AcuI	CTGAAG	2 cut(s)	249, 776
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	1087
AfiI	CCNNNNNNNGG	2 cut(s)	176, 864
AgsI	TTSAA	9 cut(s)	26, 90, 275, 555, 602, 679, 805, 902, 1028
AjnI	CCWGG	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	502, 534
Alw21I	GWGCWC	1 cut(s)	364
AlwI	GGATC	1 cut(s)	680
Ama87I	CYCGRG	1 cut(s)	587
AoxI	GGCC	1 cut(s)	960
ApeKI	GCWGC	5 cut(s)	197, 458, 620, 653, 827
ApoI	RAATTY	1 cut(s)	1018
AsuC2I	CCSGG	3 cut(s)	491, 588, 589
AsuHPI	GGTGA	3 cut(s)	740, 984, 1082
AvaI	CYCGRG	1 cut(s)	587
AxyI	CCTNAGG	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	719
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	5 cut(s)	184, 470, 607, 640, 814
BccI	CCATC	2 cut(s)	719, 1061
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	1 cut(s)	177
BcnI	CCSGG	3 cut(s)	491, 588, 589
BfaI	CTAG	3 cut(s)	225, 864, 918
BisI	GCNGC	5 cut(s)	198, 459, 621, 654, 828
BlsI	GCNGC	5 cut(s)	199, 460, 622, 655, 829
Bme1390I	CCNGG	4 cut(s)	177, 491, 588, 589
BmeT110I	CYCGRG	1 cut(s)	587
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	4 cut(s)	177, 491, 588, 589
BmrI	ACTGGG	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	719
BpmI	CTGGAG	1 cut(s)	427
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	459
BpuMI	CCSGG	3 cut(s)	491, 588, 589
BsaAI	YACGTR	1 cut(s)	1057
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	7 cut(s)	176, 489, 586, 587, 588, 963, 995
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 864
Bse1I	ACTGG	4 cut(s)	12, 158, 444, 1012
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	3 cut(s)	18, 219, 1149
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	7 cut(s)	176, 489, 586, 587, 588, 963, 995
BseGI	GGATG	2 cut(s)	499, 730
BseLI	CCNNNNNNNGG	2 cut(s)	176, 864
BseMI	GCAATG	3 cut(s)	18, 219, 1149
BseMII	CTCAG	4 cut(s)	408, 416, 709, 1082
BseNI	ACTGG	4 cut(s)	12, 158, 444, 1012
BseRI	GAGGAG	2 cut(s)	58, 61
BseXI	GCAGC	5 cut(s)	184, 470, 607, 640, 814
BseYI	CCCAGC	1 cut(s)	371
BsgI	GTGCAG	1 cut(s)	477
BshFI	GGCC	1 cut(s)	962
BsiHKAI	GWGCWC	1 cut(s)	364
BsiHKCI	CYCGRG	1 cut(s)	587
BsiSI	CCGG	2 cut(s)	491, 588
BslFI	GGGAC	4 cut(s)	139, 265, 342, 452
BslI	CCNNNNNNNGG	2 cut(s)	176, 864
BsmFI	GGGAC	4 cut(s)	139, 265, 342, 452
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	962
BsoBI	CYCGRG	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	496, 685
Bsp19I	CCATGG	1 cut(s)	963
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	962
BspCNI	CTCAG	4 cut(s)	409, 415, 708, 1083
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	680
BspQI	GCTCTTC	1 cut(s)	101
BsrDI	GCAATG	3 cut(s)	18, 219, 1149
BsrI	ACTGG	4 cut(s)	12, 158, 444, 1012
BssECI	CCNNGG	7 cut(s)	176, 489, 586, 587, 588, 963, 995
BssMI	GATC	2 cut(s)	496, 685
BssNI	GRCGYC	1 cut(s)	152
BssT1I	CCWWGG	2 cut(s)	963, 995
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	707, 837
Bst6I	CTCTTC	2 cut(s)	49, 101
BstACI	GRCGYC	1 cut(s)	152
BstBAI	YACGTR	1 cut(s)	1057
BstC8I	GCNNGC	3 cut(s)	19, 195, 369
BstDEI	CTNAG	4 cut(s)	402, 417, 695, 1091
BstDSI	CCRYGG	1 cut(s)	963
BstF5I	GGATG	2 cut(s)	499, 730
BstKTI	GATC	2 cut(s)	499, 688
BstMBI	GATC	2 cut(s)	496, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	4 cut(s)	175, 489, 586, 587
BstV1I	GCAGC	5 cut(s)	184, 470, 607, 640, 814
BstV2I	GAAGAC	1 cut(s)	719
Bsu36I	CCTNAGG	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	962
BtgI	CCRYGG	1 cut(s)	963
BtsCI	GGATG	2 cut(s)	499, 730
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	5 cut(s)	5, 312, 362, 842, 1005
Cac8I	GCNNGC	3 cut(s)	19, 195, 369
Cfr9I	CCCGGG	1 cut(s)	587
Csp6I	GTAC	1 cut(s)	1086
CviAII	CATG	5 cut(s)	36, 316, 522, 818, 964
CviQI	GTAC	1 cut(s)	1086
DdeI	CTNAG	4 cut(s)	402, 417, 695, 1091
DpnI	GATC	2 cut(s)	498, 687
DpnII	GATC	2 cut(s)	496, 685
Eam1104I	CTCTTC	2 cut(s)	49, 101
EarI	CTCTTC	2 cut(s)	49, 101
Eco130I	CCWWGG	2 cut(s)	963, 995
Eco57I	CTGAAG	2 cut(s)	249, 776
Eco81I	CCTNAGG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	175
EcoT14I	CCWWGG	2 cut(s)	963, 995
ErhI	CCWWGG	2 cut(s)	963, 995
FaeI	CATG	5 cut(s)	39, 319, 525, 821, 967
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FaqI	GGGAC	4 cut(s)	139, 265, 342, 452
FatI	CATG	5 cut(s)	35, 315, 521, 817, 963
FauI	CCCGC	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	5 cut(s)	198, 459, 621, 654, 828
FokI	GGATG	2 cut(s)	506, 737
Fsp4HI	GCNGC	5 cut(s)	198, 459, 621, 654, 828
FspBI	CTAG	3 cut(s)	225, 864, 918
GluI	GCNGC	5 cut(s)	198, 459, 621, 654, 828
GsaI	CCCAGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	427
HaeIII	GGCC	1 cut(s)	962
HapII	CCGG	2 cut(s)	491, 588
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	5 cut(s)	39, 319, 525, 821, 967
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	2 cut(s)	977, 1029
HinfI	GANTC	7 cut(s)	137, 440, 528, 731, 854, 1093, 1099
HpaII	CCGG	2 cut(s)	491, 588
HphI	GGTGA	3 cut(s)	740, 984, 1082
Hpy166II	GTNNAC	2 cut(s)	163, 992
Hpy188I	TCNGA	7 cut(s)	142, 698, 749, 1051, 1092, 1098, 1131
Hpy188III	TCNNGA	3 cut(s)	48, 805, 851
Hpy8I	GTNNAC	2 cut(s)	163, 992
Hpy99I	CGWCG	2 cut(s)	154, 749
HpyAV	CCTTC	5 cut(s)	32, 39, 96, 343, 751
HpyCH4III	ACNGT	2 cut(s)	707, 837
HpyCH4IV	ACGT	3 cut(s)	152, 744, 1056
HpyCH4V	TGCA	2 cut(s)	212, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	4 cut(s)	402, 417, 695, 1091
HpySE526I	ACGT	3 cut(s)	152, 744, 1056
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	5 cut(s)	39, 319, 525, 821, 967
Kzo9I	GATC	2 cut(s)	496, 685
LguI	GCTCTTC	1 cut(s)	101
Lsp1109I	GCAGC	5 cut(s)	184, 470, 607, 640, 814
MaeI	CTAG	3 cut(s)	225, 864, 918
MaeII	ACGT	3 cut(s)	152, 744, 1056
MaeIII	GTNAC	3 cut(s)	728, 795, 1143
MalI	GATC	2 cut(s)	498, 687
MboI	GATC	2 cut(s)	496, 685
MboII	GAAGA	9 cut(s)	36, 88, 253, 255, 256, 510, 623, 724, 1076
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	6 cut(s)	188, 299, 448, 644, 941, 1018
MlyI	GAGTC	4 cut(s)	434, 537, 725, 1102
MmeI	TCCRAC	1 cut(s)	727
MseI	TTAA	2 cut(s)	204, 719
MslI	CAYNNNNRTG	2 cut(s)	668, 968
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	2 cut(s)	491, 588
MspR9I	CCNGG	4 cut(s)	177, 491, 588, 589
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	368
NciI	CCSGG	3 cut(s)	491, 588, 589
NcoI	CCATGG	1 cut(s)	963
NdeII	GATC	2 cut(s)	496, 685
NlaIII	CATG	5 cut(s)	39, 319, 525, 821, 967
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	728
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	137, 854, 1099
PflMI	CCANNNNNTGG	1 cut(s)	176
PkrI	GCNGC	5 cut(s)	199, 460, 622, 655, 829
PleI	GAGTC	4 cut(s)	434, 536, 725, 1101
PpsI	GAGTC	4 cut(s)	434, 536, 725, 1101
Ppu21I	YACGTR	1 cut(s)	1057
Psp6I	CCWGG	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	381
PsrI	GAACNNNNNNTAC	2 cut(s)	995, 1027
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	1087
RsaNI	GTAC	1 cut(s)	1086
RseI	CAYNNNNRTG	2 cut(s)	668, 968
SalI	GTCGAC	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	204, 719
SatI	GCNGC	5 cut(s)	198, 459, 621, 654, 828
Sau3AI	GATC	2 cut(s)	496, 685
SchI	GAGTC	4 cut(s)	434, 537, 725, 1102
ScrFI	CCNGG	4 cut(s)	177, 491, 588, 589
SduI	GDGCHC	1 cut(s)	364
SmaI	CCCGGG	1 cut(s)	589
SmiMI	CAYNNNNRTG	2 cut(s)	668, 968
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
Sse9I	AATT	6 cut(s)	188, 299, 448, 644, 941, 1018
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	3 cut(s)	225, 864, 918
StyD4I	CCNGG	4 cut(s)	175, 489, 586, 587
StyI	CCWWGG	2 cut(s)	963, 995
TaaI	ACNGT	2 cut(s)	707, 837
TaiI	ACGT	3 cut(s)	155, 747, 1059
TaqI	TCGA	3 cut(s)	162, 311, 1077
TasI	AATT	6 cut(s)	188, 299, 448, 644, 941, 1018
TfiI	GAWTC	3 cut(s)	137, 854, 1099
Tru1I	TTAA	2 cut(s)	204, 719
Tru9I	TTAA	2 cut(s)	204, 719
TscAI	CASTG	5 cut(s)	12, 312, 369, 842, 1012
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	5 cut(s)	197, 458, 620, 653, 827
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	5 cut(s)	510, 755, 806, 989, 1024
TspMI	CCCGGG	1 cut(s)	587
TspRI	CASTG	5 cut(s)	12, 312, 369, 842, 1012
Van91I	CCANNNNNTGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	1018
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XmaI	CCCGGG	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	3 cut(s)	225, 864, 918
ZraI	GACGTC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.