Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004762.1

Orthogroup ID

OG0000939

Physical Location & Seq

Genomic Coordinates Forward (+)

14431 .. 16680

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004762.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgtcgtacgccataatcccagcagcgttgctctactcgtgcggcaccgatctacgcctccgcgactcccacacacttcggcccaaacgccgtgcctcacgccaccgcagctcacaacagaaacacgctaaacacgccctcttcttttctctcaacccacccaatcccaatgccgaatccgaaaccacgacgtccctagtcgacccaccaattcctaggaatgccgaatccgaaaccacgacgtccctagtcgacccaccaattcctgggaatgccgaattgcctgctgctattaagactgcaatggagagagctaaagagtataagaaaaagaagacagggactagcaaaacttcaggtgttgaagcaaatgggaaaaccaagggaaaattctcagtgtcgagcattgattttgtgggacttgggtttgctaataagaaggagggtagagcactgccagctgggttagttccaatcgcagacgattttggtcagggcaacttgcctgaggttgagattattgttggggactctagtaatttcggtgcagccacacccaagcctcaaggagataaccccctggatctttacaagccaaaggtttcttcatggggagtctttcccatacccaatgacatttcaaaaacgacattaaaggatggtgactcattgatgaacgtcggaaagctgaaggaagcattaccctactatgagaaagttatggataagttaccattcaaggtaatgcttcttgcacatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

27.48

Weight (kDa)

9.4

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780
fragaria_vesca	FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000
malus_domestica	MD02G1293900.v1.1
prunus_persica	Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1
pyrus_communis	pycom02g24770
rosa_chinensis	RchiOBHm_Chr1g0326961 RchiOBHm_Chr2g0113191 RchiOBHm_Chr2g0154951 RchiOBHm_Chr2g0154961 RchiOBHm_Chr4g0400611 RchiOBHm_Chr4g0400621 RchiOBHm_Chr4g0400631 RchiOBHm_Chr7g0221681
rosa_laevigata	RLG00000002138 RLG00000033643 RLG00000033777
rosa_multiflora	Rmu_sc0002824.1_g000035 Rmu_sc0002888.1_g000032 Rmu_sc0003745.1_g000009 Rmu_sc0004762.1_g000007 Rmu_sc0005016.1_g000031
rosa_roxburghii	Rroxscaffold_3G00238120 Rroxscaffold_4G00319400 Rroxscaffold_7G00194290
rosa_rugosa	Rorug07G0203000 Rorug07G0203000
rosa_samantha	Rh2CG244400 Rh2CG512600 Rh2DG248300 Rh4CG299800 Rh5AG377400 Rh5AG377500 Rh5AG465500 Rh5BG484000 Rh5CG508700 Rh6BG168600 Rh7AG343600 Rh7BG333700 Rh7CG361000
rosa_wichuraiana	Rw2G039480 Rw2G044190 Rw3G028860 Rw6G004980 Rw7G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	194, 245
AccB1I	GGYRCC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	266
AccI	GTMKAC	2 cut(s)	201, 252
AccII	CGCG	1 cut(s)	63
AciI	CCGC	3 cut(s)	42, 61, 106
AclWI	GGATC	1 cut(s)	591
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	2 cut(s)	339, 710
AcyI	GRCGYC	2 cut(s)	191, 242
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	3 cut(s)	365, 642, 739
AjnI	CCWGG	2 cut(s)	265, 579
AjuI	GAANNNNNNNTTGG	4 cut(s)	374, 406, 589, 621
AluBI	AGCT	4 cut(s)	111, 314, 461, 688
AluI	AGCT	4 cut(s)	111, 314, 461, 688
Alw21I	GWGCWC	1 cut(s)	454
AlwI	GGATC	1 cut(s)	591
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	4 cut(s)	23, 108, 287, 548
ApoI	RAATTY	1 cut(s)	389
AspA2I	CCTAGG	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	674
AvrII	CCTAGG	1 cut(s)	215
AxyI	CCTNAGG	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	44
BauI	CACGAG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	4 cut(s)	35, 120, 274, 560
BccI	CCATC	1 cut(s)	653
BceAI	ACGGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	2 cut(s)	267, 581
BfaI	CTAG	5 cut(s)	197, 216, 248, 345, 534
BisI	GCNGC	5 cut(s)	24, 43, 109, 288, 549
BlnI	CCTAGG	1 cut(s)	215
BlsI	GCNGC	5 cut(s)	25, 44, 110, 289, 550
Bme1390I	CCNGG	2 cut(s)	267, 581
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	267, 581
BpiI	GAAGAC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	549
BsaHI	GRCGYC	2 cut(s)	191, 242
BsaJI	CCNNGG	4 cut(s)	215, 266, 381, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse21I	CCTNAGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	2 cut(s)	267, 581
BseDI	CCNNGG	4 cut(s)	215, 266, 381, 579
BseGI	GGATG	1 cut(s)	664
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	408, 498
BseXI	GCAGC	4 cut(s)	35, 120, 274, 560
BseYI	CCCAGC	2 cut(s)	19, 461
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	82
BshNI	GGYRCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	454
BsiWI	CGTACG	1 cut(s)	6
BslFI	GGGAC	5 cut(s)	178, 229, 355, 432, 542
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmFI	GGGAC	5 cut(s)	178, 229, 355, 432, 542
BsmI	GAATGC	2 cut(s)	226, 277
BsnI	GGCC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	2 cut(s)	49, 583
BspACI	CCGC	3 cut(s)	42, 61, 106
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	2 cut(s)	407, 499
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	309
BssECI	CCNNGG	4 cut(s)	215, 266, 381, 579
BssMI	GATC	2 cut(s)	49, 583
BssNI	GRCGYC	2 cut(s)	191, 242
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	2 cut(s)	215, 381
Bst2BI	CACGAG	1 cut(s)	37
Bst2UI	CCWGG	2 cut(s)	267, 581
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	2 cut(s)	191, 242
BstC8I	GCNNGC	2 cut(s)	285, 459
BstDEI	CTNAG	2 cut(s)	394, 507
BstF5I	GGATG	1 cut(s)	664
BstFNI	CGCG	1 cut(s)	63
BstKTI	GATC	2 cut(s)	52, 586
BstMBI	GATC	2 cut(s)	49, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 134, 458
BstNI	CCWGG	2 cut(s)	267, 581
BstNSI	RCATGY	1 cut(s)	761
BstSCI	CCNGG	2 cut(s)	265, 579
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	35, 120, 274, 560
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
Bsu36I	CCTNAGG	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	664
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	2 cut(s)	402, 452
Cac8I	GCNNGC	2 cut(s)	285, 459
Cfr13I	GGNCC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	609, 758
CviJI	RGCY	8 cut(s)	82, 111, 314, 461, 551, 562, 595, 688
CviKI_1	RGCY	8 cut(s)	82, 111, 314, 461, 551, 562, 595, 688
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	2 cut(s)	394, 507
DpnI	GATC	2 cut(s)	51, 585
DpnII	GATC	2 cut(s)	49, 583
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	215, 381
Eco57I	CTGAAG	2 cut(s)	339, 710
Eco81I	CCTNAGG	1 cut(s)	507
EcoRII	CCWGG	2 cut(s)	265, 579
EcoT14I	CCWWGG	2 cut(s)	215, 381
ErhI	CCWWGG	2 cut(s)	215, 381
FaeI	CATG	2 cut(s)	612, 761
FaiI	YATR	7 cut(s)	14, 324, 610, 626, 711, 722, 759
FaqI	GGGAC	5 cut(s)	178, 229, 355, 432, 542
FatI	CATG	2 cut(s)	608, 757
FblI	GTMKAC	2 cut(s)	201, 252
Fnu4HI	GCNGC	5 cut(s)	24, 43, 109, 288, 549
FokI	GGATG	1 cut(s)	671
Fsp4HI	GCNGC	5 cut(s)	24, 43, 109, 288, 549
FspBI	CTAG	5 cut(s)	197, 216, 248, 345, 534
GluI	GCNGC	5 cut(s)	24, 43, 109, 288, 549
GsaI	CCCAGC	2 cut(s)	23, 465
HaeIII	GGCC	1 cut(s)	82
Hin1I	GRCGYC	2 cut(s)	191, 242
Hin1II	CATG	2 cut(s)	612, 761
HincII	GTYRAC	2 cut(s)	202, 253
HindII	GTYRAC	2 cut(s)	202, 253
HinfI	GANTC	6 cut(s)	65, 176, 227, 530, 615, 665
HphI	GGTGA	1 cut(s)	674
Hpy166II	GTNNAC	2 cut(s)	202, 253
Hpy188I	TCNGA	3 cut(s)	181, 232, 683
Hpy8I	GTNNAC	2 cut(s)	202, 253
Hpy99I	CGWCG	3 cut(s)	193, 244, 683
HpyAV	CCTTC	2 cut(s)	433, 685
HpyCH4IV	ACGT	3 cut(s)	191, 242, 678
HpyCH4V	TGCA	3 cut(s)	302, 548, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 134, 458
HpyF3I	CTNAG	2 cut(s)	394, 507
HpySE526I	ACGT	3 cut(s)	191, 242, 678
Hsp92I	GRCGYC	2 cut(s)	191, 242
Hsp92II	CATG	2 cut(s)	612, 761
Kzo9I	GATC	2 cut(s)	49, 583
Lsp1109I	GCAGC	4 cut(s)	35, 120, 274, 560
MaeI	CTAG	5 cut(s)	197, 216, 248, 345, 534
MaeII	ACGT	3 cut(s)	191, 242, 678
MaeIII	GTNAC	2 cut(s)	662, 729
MalI	GATC	2 cut(s)	51, 585
MboI	GATC	2 cut(s)	49, 583
MboII	GAAGA	3 cut(s)	133, 346, 597
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	5 cut(s)	210, 261, 278, 389, 538
MlyI	GAGTC	4 cut(s)	59, 524, 624, 659
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	6 cut(s)	68, 106, 149, 436, 502, 573
MseI	TTAA	3 cut(s)	294, 653, 763
MspA1I	CMGCKG	1 cut(s)	461
MspR9I	CCNGG	2 cut(s)	267, 581
Mva1269I	GAATGC	2 cut(s)	226, 277
MvaI	CCWGG	2 cut(s)	267, 581
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	3 cut(s)	108, 134, 458
NdeII	GATC	2 cut(s)	49, 583
NlaIII	CATG	2 cut(s)	612, 761
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	662
NspI	RCATGY	1 cut(s)	761
PciI	ACATGT	1 cut(s)	757
PctI	GAATGC	2 cut(s)	226, 277
PfeI	GAWTC	2 cut(s)	176, 227
Pfl23II	CGTACG	1 cut(s)	6
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	5 cut(s)	25, 44, 110, 289, 550
PleI	GAGTC	4 cut(s)	59, 524, 623, 659
PpsI	GAGTC	4 cut(s)	59, 524, 623, 659
PscI	ACATGT	1 cut(s)	757
Psp6I	CCWGG	2 cut(s)	265, 579
PspFI	CCCAGC	2 cut(s)	19, 461
PspGI	CCWGG	2 cut(s)	265, 579
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SalI	GTCGAC	2 cut(s)	200, 251
SaqAI	TTAA	3 cut(s)	294, 653, 763
SatI	GCNGC	5 cut(s)	24, 43, 109, 288, 549
Sau3AI	GATC	2 cut(s)	49, 583
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	4 cut(s)	59, 524, 624, 659
ScrFI	CCNGG	2 cut(s)	267, 581
SduI	GDGCHC	1 cut(s)	454
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
Sse9I	AATT	5 cut(s)	210, 261, 278, 389, 538
SsiI	CCGC	3 cut(s)	42, 61, 106
SspMI	CTAG	5 cut(s)	197, 216, 248, 345, 534
StyD4I	CCNGG	2 cut(s)	265, 579
StyI	CCWWGG	2 cut(s)	215, 381
TaiI	ACGT	3 cut(s)	194, 245, 681
TaqI	TCGA	3 cut(s)	201, 252, 401
TasI	AATT	5 cut(s)	210, 261, 278, 389, 538
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	2 cut(s)	176, 227
Tru1I	TTAA	3 cut(s)	294, 653, 763
Tru9I	TTAA	3 cut(s)	294, 653, 763
TscAI	CASTG	2 cut(s)	402, 459
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	4 cut(s)	23, 108, 287, 548
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	2 cut(s)	597, 689
TspRI	CASTG	2 cut(s)	402, 459
Van91I	CCANNNNNTGG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	1 cut(s)	761
XmaJI	CCTAGG	1 cut(s)	215
XmiI	GTMKAC	2 cut(s)	201, 252
XspI	CTAG	5 cut(s)	197, 216, 248, 345, 534
ZraI	GACGTC	2 cut(s)	192, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.