Rh7AG343600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000939
Physical Location & Seq
Forward (+)
43394153 .. 43402143
7991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG343600.1

Sequence Viewer

Length: 837 bp
ATGGCAAAGGCAATGGCAATGGCTTGCCTTCAACCTTCTTCATGGCTCTCTTCCCGACCCACTCTCTTTCCCTCCTCCTCAAAGCCCCACCCTTCAAAGCTCTTCTTTTCTCTCAACCCACCCAATCCCAATCCCAATGCCGAATCCGAAACCACGACGTCCCCAGTCGACCCGCCAAGTCCTGGGAATGCCGAATTGCCTGCTGCTGTTAAGACTGCAATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAGAAAGGGACTAACAAATCTTCAGGTGTTGAAGCAAATGAGAAAAACAAGGGAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCCGATAAGAAGGAGGGTAGAGCACTGCCAGCTGGGTTGGTTCCAATCGCAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCAGCCACACCCAAGCCTCAAGGAGATGACCCCCCGGATGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAACGTTTGGTGGTGGGCGAGTTATACGCCCCGGGGAAGTGCTTGAAACGCAGGAAGAAAAAGCTGCTAAAGAGGAACGAACAAGACAATTAGTTGCTGCTTACAACACTAAAATGGGCTTGAACATTGATCCCAAGCTCAGATTGGACTGTGAGAAGACATTAAGGGATGGTGACTCATTGATGAACGTCGGAAAGCTGAAGGAAGCATTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGGTAATGCTTCTTGCACATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

30.17

Weight (kDa)

8.85

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 182
AccI GTMKAC 1 cut(s) 168
AciI CCGC 1 cut(s) 173
AclI AACGTT 1 cut(s) 566
AclWI GGATC 1 cut(s) 686
AcuI CTGAAG 2 cut(s) 255, 782
AcyI GRCGYC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 829
AgsI TTSAA 7 cut(s) 32, 96, 281, 561, 608, 685, 811
AjnI CCWGG 1 cut(s) 181
AjuI GAANNNNNNNTTGG 2 cut(s) 508, 540
AluBI AGCT 6 cut(s) 100, 230, 377, 626, 700, 760
AluI AGCT 6 cut(s) 100, 230, 377, 626, 700, 760
Alw21I GWGCWC 1 cut(s) 370
AlwI GGATC 1 cut(s) 686
Ama87I CYCGRG 1 cut(s) 593
ApeKI GCWGC 4 cut(s) 203, 464, 626, 659
AsuC2I CCSGG 3 cut(s) 497, 594, 595
AsuHPI GGTGA 1 cut(s) 746
AvaI CYCGRG 1 cut(s) 593
AxyI CCTNAGG 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 725
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 4 cut(s) 190, 476, 613, 646
BccI CCATC 1 cut(s) 725
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciT130I CCWGG 1 cut(s) 183
BcnI CCSGG 3 cut(s) 497, 594, 595
BfaI CTAG 1 cut(s) 231
BisI GCNGC 4 cut(s) 204, 465, 627, 660
BlsI GCNGC 4 cut(s) 205, 466, 628, 661
Bme1390I CCNGG 4 cut(s) 183, 497, 594, 595
BmeT110I CYCGRG 1 cut(s) 593
BmiI GGNNCC 1 cut(s) 387
BmrFI CCNGG 4 cut(s) 183, 497, 594, 595
BmrI ACTGGG 1 cut(s) 158
BmuI ACTGGG 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 725
BpmI CTGGAG 1 cut(s) 433
Bpu10I CCTNAGC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 465
BpuMI CCSGG 3 cut(s) 497, 594, 595
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 5 cut(s) 182, 495, 592, 593, 594
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 164, 450
Bse21I CCTNAGG 1 cut(s) 423
Bse3DI GCAATG 3 cut(s) 18, 24, 225
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 5 cut(s) 182, 495, 592, 593, 594
BseGI GGATG 2 cut(s) 505, 736
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMI GCAATG 3 cut(s) 18, 24, 225
BseMII CTCAG 3 cut(s) 414, 422, 715
BseNI ACTGG 2 cut(s) 164, 450
BseRI GAGGAG 2 cut(s) 64, 67
BseXI GCAGC 4 cut(s) 190, 476, 613, 646
BseYI CCCAGC 1 cut(s) 377
BsgI GTGCAG 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 593
BsiSI CCGG 2 cut(s) 497, 594
BslFI GGGAC 4 cut(s) 145, 271, 348, 458
BslI CCNNNNNNNGG 1 cut(s) 182
BsmFI GGGAC 4 cut(s) 145, 271, 348, 458
BsmI GAATGC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 2 cut(s) 502, 691
BspACI CCGC 1 cut(s) 173
BspCNI CTCAG 3 cut(s) 415, 421, 714
BspLI GGNNCC 1 cut(s) 387
BspPI GGATC 1 cut(s) 686
BspQI GCTCTTC 1 cut(s) 107
BsrDI GCAATG 3 cut(s) 18, 24, 225
BsrI ACTGG 2 cut(s) 164, 450
BssECI CCNNGG 5 cut(s) 182, 495, 592, 593, 594
BssMI GATC 2 cut(s) 502, 691
BssNI GRCGYC 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 713
Bst6I CTCTTC 2 cut(s) 55, 107
BstACI GRCGYC 1 cut(s) 158
BstC8I GCNNGC 3 cut(s) 25, 201, 375
BstDEI CTNAG 3 cut(s) 408, 423, 701
BstF5I GGATG 2 cut(s) 505, 736
BstKTI GATC 2 cut(s) 505, 694
BstMBI GATC 2 cut(s) 502, 691
BstMWI GCNNNNNNNGC 2 cut(s) 374, 610
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 833
BstSCI CCNGG 4 cut(s) 181, 495, 592, 593
BstV1I GCAGC 4 cut(s) 190, 476, 613, 646
BstV2I GAAGAC 1 cut(s) 725
Bsu36I CCTNAGG 1 cut(s) 423
BtsCI GGATG 2 cut(s) 505, 736
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 2 cut(s) 318, 368
Cac8I GCNNGC 3 cut(s) 25, 201, 375
Cfr9I CCCGGG 1 cut(s) 593
CviAII CATG 4 cut(s) 42, 322, 528, 830
DdeI CTNAG 3 cut(s) 408, 423, 701
DpnI GATC 2 cut(s) 504, 693
DpnII GATC 2 cut(s) 502, 691
Eam1104I CTCTTC 2 cut(s) 55, 107
EarI CTCTTC 2 cut(s) 55, 107
Eco57I CTGAAG 2 cut(s) 255, 782
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 593
EcoRII CCWGG 1 cut(s) 181
FaeI CATG 4 cut(s) 45, 325, 531, 833
FaiI YATR 8 cut(s) 43, 240, 323, 529, 587, 783, 794, 831
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FaqI GGGAC 4 cut(s) 145, 271, 348, 458
FatI CATG 4 cut(s) 41, 321, 527, 829
FauI CCCGC 1 cut(s) 180
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 4 cut(s) 204, 465, 627, 660
FokI GGATG 2 cut(s) 512, 743
Fsp4HI GCNGC 4 cut(s) 204, 465, 627, 660
FspBI CTAG 1 cut(s) 231
GluI GCNGC 4 cut(s) 204, 465, 627, 660
GsaI CCCAGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 433
HapII CCGG 2 cut(s) 497, 594
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 4 cut(s) 45, 325, 531, 833
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 4 cut(s) 143, 446, 534, 737
HpaII CCGG 2 cut(s) 497, 594
HphI GGTGA 1 cut(s) 746
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 148, 704, 755
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 2 cut(s) 160, 755
HpyAV CCTTC 5 cut(s) 38, 45, 102, 349, 757
HpyCH4III ACNGT 1 cut(s) 713
HpyCH4IV ACGT 3 cut(s) 158, 566, 750
HpyCH4V TGCA 3 cut(s) 218, 464, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 610
HpyF3I CTNAG 3 cut(s) 408, 423, 701
HpySE526I ACGT 3 cut(s) 158, 566, 750
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 4 cut(s) 45, 325, 531, 833
Kzo9I GATC 2 cut(s) 502, 691
LguI GCTCTTC 1 cut(s) 107
Lsp1109I GCAGC 4 cut(s) 190, 476, 613, 646
MaeI CTAG 1 cut(s) 231
MaeII ACGT 3 cut(s) 158, 566, 750
MaeIII GTNAC 2 cut(s) 734, 801
MalI GATC 2 cut(s) 504, 693
MboI GATC 2 cut(s) 502, 691
MboII GAAGA 9 cut(s) 30, 42, 94, 259, 261, 262, 516, 629, 730
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 4 cut(s) 194, 305, 454, 650
MlyI GAGTC 3 cut(s) 440, 543, 731
MmeI TCCRAC 1 cut(s) 733
MnlI CCTC 7 cut(s) 82, 85, 88, 352, 418, 489, 628
MseI TTAA 3 cut(s) 210, 725, 835
MslI CAYNNNNRTG 1 cut(s) 674
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 2 cut(s) 497, 594
MspR9I CCNGG 4 cut(s) 183, 497, 594, 595
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 374, 610
NciI CCSGG 3 cut(s) 497, 594, 595
NdeII GATC 2 cut(s) 502, 691
NlaIII CATG 4 cut(s) 45, 325, 531, 833
NlaIV GGNNCC 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 734
NspI RCATGY 1 cut(s) 833
PciI ACATGT 1 cut(s) 829
PciSI GCTCTTC 1 cut(s) 107
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 4 cut(s) 205, 466, 628, 661
PleI GAGTC 3 cut(s) 440, 542, 731
PpsI GAGTC 3 cut(s) 440, 542, 731
PscI ACATGT 1 cut(s) 829
Psp1406I AACGTT 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 377
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 387
PvuII CAGCTG 1 cut(s) 377
RseI CAYNNNNRTG 1 cut(s) 674
SalI GTCGAC 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 3 cut(s) 210, 725, 835
SatI GCNGC 4 cut(s) 204, 465, 627, 660
Sau3AI GATC 2 cut(s) 502, 691
SchI GAGTC 3 cut(s) 440, 543, 731
ScrFI CCNGG 4 cut(s) 183, 497, 594, 595
SduI GDGCHC 1 cut(s) 370
SmaI CCCGGG 1 cut(s) 595
SmiMI CAYNNNNRTG 1 cut(s) 674
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
Sse9I AATT 4 cut(s) 194, 305, 454, 650
SsiI CCGC 1 cut(s) 173
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 4 cut(s) 181, 495, 592, 593
TaaI ACNGT 1 cut(s) 713
TaiI ACGT 3 cut(s) 161, 569, 753
TaqI TCGA 2 cut(s) 168, 317
TasI AATT 4 cut(s) 194, 305, 454, 650
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 3 cut(s) 210, 725, 835
Tru9I TTAA 3 cut(s) 210, 725, 835
TscAI CASTG 2 cut(s) 318, 375
TseFI GTSAC 1 cut(s) 734
TseI GCWGC 4 cut(s) 203, 464, 626, 659
Tsp45I GTSAC 1 cut(s) 734
TspDTI ATGAA 3 cut(s) 30, 516, 761
TspMI CCCGGG 1 cut(s) 593
TspRI CASTG 2 cut(s) 318, 375
Van91I CCANNNNNTGG 1 cut(s) 182
XceI RCATGY 1 cut(s) 833
XcmI CCANNNNNNNNNTGG 1 cut(s) 703
XmaI CCCGGG 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 1 cut(s) 231
ZraI GACGTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.