Rw3G028860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000939
Physical Location & Seq
Reverse (-)
43751318 .. 43756872
5555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G028860.1

Sequence Viewer

Length: 837 bp
ATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAGACAGGGACTAGCAAAACTTCAGGTGTTGAAGCAAATGAGAAAAACAAGGGAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCTGATAAGAAGGAGGGTAGAGCACTGCCAGCTGGGTTGGTTCATATCGCAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCAGCCACACCCAAGCCTCAAAGAGATGACCCCCTGGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAACATTTGGTGGTGGGCGAGTTATACACCCCGGGGAAGTGCTTGAAACGCAGGAAGAAAAAGCTGCTAAGGAGGAACGAACAAGACAATTAGTTGCTGCTTACAACACAAAAATGGGCTTGAACATTGATCCCAAGCTCAGATTGGACTGTGAGAAGACATTAAAGGATGGTGACTCATTGATGAACGTCGGAAAGCTGAAGGAAGCATTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGTACATTAACATATCGGTACCACTGTATGGAGTCAGTCTAGCACAGTATCGAGCTTGTGTACTTCATTTACTGATGCATTGTACTTACTTCAGGAGCCACCCTAGGGAAGAAATCGAAGGGAGAAAAATCAGCCGAAAGGGAGGAAGGGTCGAGGGAGAGGAGAAAGAGAGTTACCGTGGGTTTCCGAAAATGGAAACCTACAGTGGTAACTTTCCATATATATATTTTTATTACCATGAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

31.42

Weight (kDa)

8.84

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 607
AccB1I GGYRCC 1 cut(s) 607
AccB7I CCANNNNNTGG 1 cut(s) 617
AclWI GGATC 2 cut(s) 288, 464
AcuI CTGAAG 3 cut(s) 36, 560, 664
AfaI GTAC 4 cut(s) 593, 609, 651, 673
AfiI CCNNNNNNNGG 2 cut(s) 617, 694
AgsI TTSAA 5 cut(s) 62, 339, 386, 463, 589
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
AluBI AGCT 6 cut(s) 11, 158, 404, 478, 538, 644
AluI AGCT 6 cut(s) 11, 158, 404, 478, 538, 644
Alw21I GWGCWC 1 cut(s) 151
AlwI GGATC 2 cut(s) 288, 464
Ama87I CYCGRG 1 cut(s) 371
ApeKI GCWGC 3 cut(s) 245, 404, 437
Asp718I GGTACC 1 cut(s) 607
AspA2I CCTAGG 1 cut(s) 692
AsuC2I CCSGG 2 cut(s) 372, 373
AsuHPI GGTGA 1 cut(s) 524
AvaI CYCGRG 1 cut(s) 371
AvrII CCTAGG 1 cut(s) 692
AxyI CCTNAGG 1 cut(s) 204
BaeI ACNNNNGTAYC 2 cut(s) 599, 632
BanI GGYRCC 1 cut(s) 607
BbsI GAAGAC 2 cut(s) 38, 503
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 3 cut(s) 257, 391, 424
BccI CCATC 1 cut(s) 503
BciT130I CCWGG 1 cut(s) 278
BcnI CCSGG 2 cut(s) 372, 373
BfaI CTAG 4 cut(s) 12, 42, 629, 693
BfmI CTRYAG 1 cut(s) 790
BisI GCNGC 3 cut(s) 246, 405, 438
BlnI CCTAGG 1 cut(s) 692
BlsI GCNGC 3 cut(s) 247, 406, 439
Bme1390I CCNGG 3 cut(s) 278, 372, 373
BmeT110I CYCGRG 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 609, 686
BmrFI CCNGG 3 cut(s) 278, 372, 373
BmsI GCATC 1 cut(s) 654
BpiI GAAGAC 2 cut(s) 38, 503
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 2 cut(s) 189, 408
BpuMI CCSGG 2 cut(s) 372, 373
BsaJI CCNNGG 6 cut(s) 276, 370, 371, 372, 692, 766
BsaXI ACNNNNNCTCC 2 cut(s) 723, 753
Bsc4I CCNNNNNNNGG 2 cut(s) 617, 694
Bse1I ACTGG 1 cut(s) 231
Bse21I CCTNAGG 1 cut(s) 204
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 6 cut(s) 276, 370, 371, 372, 692, 766
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 2 cut(s) 617, 694
BseMII CTCAG 3 cut(s) 195, 203, 493
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 764
BseXI GCAGC 3 cut(s) 257, 391, 424
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 3 cut(s) 52, 129, 239
BslI CCNNNNNNNGG 2 cut(s) 617, 694
BsmFI GGGAC 3 cut(s) 52, 129, 239
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 280, 469
BspCNI CTCAG 3 cut(s) 196, 202, 492
BspLI GGNNCC 2 cut(s) 609, 686
BspPI GGATC 2 cut(s) 288, 464
BspT107I GGYRCC 1 cut(s) 607
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 6 cut(s) 276, 370, 371, 372, 692, 766
BssMI GATC 2 cut(s) 280, 469
BssT1I CCWWGG 1 cut(s) 692
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 6 cut(s) 491, 615, 636, 767, 794, 834
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 4 cut(s) 189, 204, 408, 479
BstDSI CCRYGG 1 cut(s) 766
BstF5I GGATG 1 cut(s) 514
BstKTI GATC 2 cut(s) 283, 472
BstMBI GATC 2 cut(s) 280, 469
BstMWI GCNNNNNNNGC 2 cut(s) 155, 388
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 276, 370, 371
BstSFI CTRYAG 1 cut(s) 790
BstV1I GCAGC 3 cut(s) 257, 391, 424
BstV2I GAAGAC 2 cut(s) 38, 503
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
Bsu36I CCTNAGG 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 766
BtsCI GGATG 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 4 cut(s) 99, 149, 611, 799
Cac8I GCNNGC 1 cut(s) 156
Cfr9I CCCGGG 1 cut(s) 371
Csp6I GTAC 4 cut(s) 592, 608, 650, 672
CviAII CATG 3 cut(s) 103, 306, 827
CviQI GTAC 4 cut(s) 592, 608, 650, 672
DdeI CTNAG 4 cut(s) 189, 204, 408, 479
DpnI GATC 2 cut(s) 282, 471
DpnII GATC 2 cut(s) 280, 469
Eco130I CCWWGG 1 cut(s) 692
Eco57I CTGAAG 3 cut(s) 36, 560, 664
Eco81I CCTNAGG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 692
EcoT22I ATGCAT 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 692
FaeI CATG 3 cut(s) 106, 309, 830
FaqI GGGAC 3 cut(s) 52, 129, 239
FatI CATG 3 cut(s) 102, 305, 826
Fnu4HI GCNGC 3 cut(s) 246, 405, 438
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 3 cut(s) 246, 405, 438
FspBI CTAG 4 cut(s) 12, 42, 629, 693
GluI GCNGC 3 cut(s) 246, 405, 438
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 214
HapII CCGG 1 cut(s) 372
Hin1II CATG 3 cut(s) 106, 309, 830
HinfI GANTC 4 cut(s) 227, 312, 515, 621
HpaII CCGG 1 cut(s) 372
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 1 cut(s) 650
Hpy188I TCNGA 3 cut(s) 482, 533, 777
Hpy188III TCNNGA 1 cut(s) 682
Hpy8I GTNNAC 1 cut(s) 650
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 4 cut(s) 130, 535, 701, 729
HpyCH4III ACNGT 6 cut(s) 491, 615, 636, 767, 794, 834
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 2 cut(s) 245, 667
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 388
HpyF3I CTNAG 4 cut(s) 189, 204, 408, 479
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 3 cut(s) 106, 309, 830
KpnI GGTACC 1 cut(s) 611
Kzo9I GATC 2 cut(s) 280, 469
LmnI GCTCC 1 cut(s) 684
Lsp1109I GCAGC 3 cut(s) 257, 391, 424
LweI GCATC 1 cut(s) 654
MaeI CTAG 4 cut(s) 12, 42, 629, 693
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 4 cut(s) 512, 579, 761, 797
MalI GATC 2 cut(s) 282, 471
MboI GATC 2 cut(s) 280, 469
MboII GAAGA 6 cut(s) 40, 43, 294, 407, 508, 710
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 3 cut(s) 86, 235, 428
MlyI GAGTC 4 cut(s) 221, 321, 509, 630
MmeI TCCRAC 1 cut(s) 511
MnlI CCTC 7 cut(s) 133, 199, 270, 406, 725, 736, 742
Mph1103I ATGCAT 1 cut(s) 669
MseI TTAA 2 cut(s) 503, 597
MslI CAYNNNNRTG 1 cut(s) 452
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 3 cut(s) 278, 372, 373
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 155, 388
NciI CCSGG 2 cut(s) 372, 373
NdeII GATC 2 cut(s) 280, 469
NlaIII CATG 3 cut(s) 106, 309, 830
NlaIV GGNNCC 2 cut(s) 609, 686
NmuCI GTSAC 1 cut(s) 512
NsiI ATGCAT 1 cut(s) 669
PflMI CCANNNNNTGG 1 cut(s) 617
PkrI GCNGC 3 cut(s) 247, 406, 439
PleI GAGTC 4 cut(s) 221, 320, 509, 629
PpsI GAGTC 4 cut(s) 221, 320, 509, 629
Psp6I CCWGG 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 609, 686
PsuI RGATCY 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 4 cut(s) 593, 609, 651, 673
RsaNI GTAC 4 cut(s) 592, 608, 650, 672
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 2 cut(s) 503, 597
SatI GCNGC 3 cut(s) 246, 405, 438
Sau3AI GATC 2 cut(s) 280, 469
SchI GAGTC 4 cut(s) 221, 321, 509, 630
ScrFI CCNGG 3 cut(s) 278, 372, 373
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 1 cut(s) 654
SfcI CTRYAG 1 cut(s) 790
SmaI CCCGGG 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 452
Sse9I AATT 3 cut(s) 86, 235, 428
SspMI CTAG 4 cut(s) 12, 42, 629, 693
StyD4I CCNGG 3 cut(s) 276, 370, 371
StyI CCWWGG 1 cut(s) 692
TaaI ACNGT 6 cut(s) 491, 615, 636, 767, 794, 834
TaiI ACGT 1 cut(s) 531
TaqI TCGA 4 cut(s) 98, 640, 705, 741
TasI AATT 3 cut(s) 86, 235, 428
TatI WGTACW 3 cut(s) 591, 649, 671
Tru1I TTAA 2 cut(s) 503, 597
Tru9I TTAA 2 cut(s) 503, 597
TscAI CASTG 4 cut(s) 99, 156, 618, 799
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 3 cut(s) 245, 404, 437
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 4 cut(s) 158, 294, 539, 644
TspMI CCCGGG 1 cut(s) 371
TspRI CASTG 4 cut(s) 99, 156, 618, 799
Van91I CCANNNNNTGG 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XmaI CCCGGG 1 cut(s) 371
XmaJI CCTAGG 1 cut(s) 692
XspI CTAG 4 cut(s) 12, 42, 629, 693
Zsp2I ATGCAT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.