Rw2G039480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000939
Physical Location & Seq
Forward (+)
64795271 .. 64799014
3744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039480.1

Sequence Viewer

Length: 963 bp
ATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAGACAGGGACTAGCAAAACTTCAGGTGTTGAAGCAAATGAGAAAAACAAGGGAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCTGATAAGAAGGAGGGTAGAGCACTGCCAGTTGGGTTGGTTCCAATCGCAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCAGCCACACCCAAGTCTCAAGGAGATGACCCCCTGGATCTTTACAAGCCAAAGGTTTCTTCACGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAACATTTGGTGGTGGGCGAGTTATACACCCCGGGGAAGTGCTTGAAATGCAGGAAGAAAAAGCTGCTAAGGAGGAACGAACAAGACAATTAGTTGCTGCTTACGACACTAAAATGGGCTTGAACATTGATCCCAAGCTCATATTGGACTGTGAGAAGACATTAAAGGATTGTGACTCATTGATGAACGTCGGAAAGCTGAAGGAAGCATTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGTCTACACTGCATGAAGTTAGTACATTAACATATCGGTACCACTGTATGGAGTCAAATAAGTTACTTAAACAGGGTCAGGTGGTATATCAAGTATTCAAGGCTGCCAGAACCATCAATGAAAGTGTTCTTCTTGAAATGCCTGTGCCAACCATTATCAGGGATGCACTTCCCAAGGTAGTGAAATTTTTTCTGGTTTATCCCATTTCAGTTAGACGTTCTAGTATTAGTGCTCAGAATGGTGATCGTGGCTTTTTCCTTTTTTTTTTTTCAGTCTTCTTTAATCAATCCTTGCATTTTTCATTGCCCAATGTTGTGTTATTGTTTACTGTAATTCTTTTGGTAGATTTTTTTTTTTTTTTTTTGGTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

35.94

Weight (kDa)

8.88

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 215 - 259 7e-10 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 627
AccB1I GGYRCC 1 cut(s) 627
AccB7I CCANNNNNTGG 1 cut(s) 637
AccI GTMKAC 1 cut(s) 593
AclWI GGATC 2 cut(s) 288, 464
AcsI RAATTY 1 cut(s) 773
AcuI CTGAAG 2 cut(s) 36, 560
AfaI GTAC 2 cut(s) 613, 629
AfiI CCNNNNNNNGG 2 cut(s) 637, 747
AgsI TTSAA 7 cut(s) 62, 339, 386, 463, 589, 688, 725
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
AluBI AGCT 4 cut(s) 11, 404, 478, 538
AluI AGCT 4 cut(s) 11, 404, 478, 538
Alw21I GWGCWC 2 cut(s) 151, 823
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 2 cut(s) 288, 464
Ama87I CYCGRG 1 cut(s) 371
ApeKI GCWGC 4 cut(s) 245, 404, 437, 692
ApoI RAATTY 1 cut(s) 773
Asp700I GAANNNNTTC 1 cut(s) 714
Asp718I GGTACC 1 cut(s) 627
AsuC2I CCSGG 2 cut(s) 372, 373
AsuHPI GGTGA 1 cut(s) 842
AvaI CYCGRG 1 cut(s) 371
AxyI CCTNAGG 1 cut(s) 204
BaeI ACNNNNGTAYC 2 cut(s) 619, 652
BanI GGYRCC 1 cut(s) 627
BbsI GAAGAC 3 cut(s) 38, 503, 856
Bbv12I GWGCWC 2 cut(s) 151, 823
BbvI GCAGC 4 cut(s) 257, 391, 424, 679
BccI CCATC 1 cut(s) 710
BciT130I CCWGG 1 cut(s) 278
BcnI CCSGG 2 cut(s) 372, 373
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 3 cut(s) 12, 42, 810
BisI GCNGC 4 cut(s) 246, 405, 438, 693
BlsI GCNGC 4 cut(s) 247, 406, 439, 694
Bme1390I CCNGG 3 cut(s) 278, 372, 373
BmeT110I CYCGRG 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 168, 629
BmrFI CCNGG 3 cut(s) 278, 372, 373
BmsI GCATC 1 cut(s) 742
BpiI GAAGAC 3 cut(s) 38, 503, 856
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 2 cut(s) 189, 408
BpuEI CTTGAG 1 cut(s) 246
BpuMI CCSGG 2 cut(s) 372, 373
BsaJI CCNNGG 5 cut(s) 276, 370, 371, 372, 762
Bsc4I CCNNNNNNNGG 2 cut(s) 637, 747
Bse1I ACTGG 2 cut(s) 155, 231
Bse21I CCTNAGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 890
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 5 cut(s) 276, 370, 371, 372, 762
BseGI GGATG 1 cut(s) 757
BseLI CCNNNNNNNGG 2 cut(s) 637, 747
BseMI GCAATG 1 cut(s) 890
BseMII CTCAG 3 cut(s) 195, 203, 836
BseNI ACTGG 2 cut(s) 155, 231
BseXI GCAGC 4 cut(s) 257, 391, 424, 679
BsgI GTGCAG 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 627
BsiHKAI GWGCWC 2 cut(s) 151, 823
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 3 cut(s) 52, 129, 239
BslI CCNNNNNNNGG 2 cut(s) 637, 747
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 3 cut(s) 52, 129, 239
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 151, 823
Bsp143I GATC 3 cut(s) 280, 469, 832
BspCNI CTCAG 3 cut(s) 196, 202, 835
BspLI GGNNCC 2 cut(s) 168, 629
BspPI GGATC 2 cut(s) 288, 464
BspT107I GGYRCC 1 cut(s) 627
BsrDI GCAATG 1 cut(s) 890
BsrI ACTGG 2 cut(s) 155, 231
BssECI CCNNGG 5 cut(s) 276, 370, 371, 372, 762
BssMI GATC 3 cut(s) 280, 469, 832
BssT1I CCWWGG 1 cut(s) 762
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 3 cut(s) 491, 635, 919
BstDEI CTNAG 4 cut(s) 189, 204, 408, 822
BstF5I GGATG 1 cut(s) 757
BstKTI GATC 3 cut(s) 283, 472, 835
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 3 cut(s) 280, 469, 832
BstMWI GCNNNNNNNGC 1 cut(s) 388
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 276, 370, 371
BstV1I GCAGC 4 cut(s) 257, 391, 424, 679
BstV2I GAAGAC 3 cut(s) 38, 503, 856
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
Bsu36I CCTNAGG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 757
BtsI GCAGTG 2 cut(s) 149, 596
BtsIMutI CAGTG 4 cut(s) 99, 149, 596, 631
Cfr9I CCCGGG 1 cut(s) 371
Csp6I GTAC 2 cut(s) 612, 628
CviAII CATG 2 cut(s) 103, 602
CviJI RGCY 9 cut(s) 11, 248, 292, 404, 459, 478, 538, 692, 840
CviKI_1 RGCY 9 cut(s) 11, 248, 292, 404, 459, 478, 538, 692, 840
CviQI GTAC 2 cut(s) 612, 628
DdeI CTNAG 4 cut(s) 189, 204, 408, 822
DpnI GATC 3 cut(s) 282, 471, 834
DpnII GATC 3 cut(s) 280, 469, 832
Eco130I CCWWGG 1 cut(s) 762
Eco57I CTGAAG 2 cut(s) 36, 560
Eco81I CCTNAGG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 762
ErhI CCWWGG 1 cut(s) 762
FaeI CATG 2 cut(s) 106, 605
FaqI GGGAC 3 cut(s) 52, 129, 239
FatI CATG 2 cut(s) 102, 601
FblI GTMKAC 1 cut(s) 593
Fnu4HI GCNGC 4 cut(s) 246, 405, 438, 693
FokI GGATG 1 cut(s) 764
Fsp4HI GCNGC 4 cut(s) 246, 405, 438, 693
FspBI CTAG 3 cut(s) 12, 42, 810
GluI GCNGC 4 cut(s) 246, 405, 438, 693
GsuI CTGGAG 1 cut(s) 214
HapII CCGG 1 cut(s) 372
Hin1II CATG 2 cut(s) 106, 605
HinfI GANTC 4 cut(s) 227, 312, 515, 641
HpaII CCGG 1 cut(s) 372
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 2 cut(s) 594, 915
Hpy188I TCNGA 3 cut(s) 533, 825, 962
Hpy188III TCNNGA 1 cut(s) 722
Hpy8I GTNNAC 2 cut(s) 594, 915
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 2 cut(s) 130, 535
HpyCH4III ACNGT 3 cut(s) 491, 635, 919
HpyCH4IV ACGT 2 cut(s) 528, 805
HpyCH4V TGCA 5 cut(s) 245, 391, 601, 755, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 388
HpyF3I CTNAG 4 cut(s) 189, 204, 408, 822
HpySE526I ACGT 2 cut(s) 528, 805
Hsp92II CATG 2 cut(s) 106, 605
KpnI GGTACC 1 cut(s) 631
Kzo9I GATC 3 cut(s) 280, 469, 832
Lsp1109I GCAGC 4 cut(s) 257, 391, 424, 679
LweI GCATC 1 cut(s) 742
MaeI CTAG 3 cut(s) 12, 42, 810
MaeII ACGT 2 cut(s) 528, 805
MaeIII GTNAC 3 cut(s) 512, 579, 651
MalI GATC 3 cut(s) 282, 471, 834
MboI GATC 3 cut(s) 280, 469, 832
MboII GAAGA 7 cut(s) 40, 43, 294, 407, 508, 710, 856
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 2 cut(s) 151, 823
MluCI AATT 5 cut(s) 86, 235, 428, 773, 921
MlyI GAGTC 4 cut(s) 221, 321, 509, 650
MmeI TCCRAC 1 cut(s) 511
MnlI CCTC 3 cut(s) 133, 199, 406
MroXI GAANNNNTTC 1 cut(s) 714
MseI TTAA 4 cut(s) 503, 617, 657, 870
MslI CAYNNNNRTG 1 cut(s) 452
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 3 cut(s) 278, 372, 373
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 388
NciI CCSGG 2 cut(s) 372, 373
NdeII GATC 3 cut(s) 280, 469, 832
NlaIII CATG 2 cut(s) 106, 605
NlaIV GGNNCC 2 cut(s) 168, 629
NmuCI GTSAC 1 cut(s) 512
PdmI GAANNNNTTC 1 cut(s) 714
PflMI CCANNNNNTGG 1 cut(s) 637
PkrI GCNGC 4 cut(s) 247, 406, 439, 694
PleI GAGTC 4 cut(s) 221, 320, 509, 649
PpsI GAGTC 4 cut(s) 221, 320, 509, 649
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 168, 629
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 2 cut(s) 613, 629
RsaNI GTAC 2 cut(s) 612, 628
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 4 cut(s) 503, 617, 657, 870
SatI GCNGC 4 cut(s) 246, 405, 438, 693
Sau3AI GATC 3 cut(s) 280, 469, 832
SchI GAGTC 4 cut(s) 221, 321, 509, 650
ScrFI CCNGG 3 cut(s) 278, 372, 373
SduI GDGCHC 2 cut(s) 151, 823
SfaNI GCATC 1 cut(s) 742
SmaI CCCGGG 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
Sse9I AATT 5 cut(s) 86, 235, 428, 773, 921
SspMI CTAG 3 cut(s) 12, 42, 810
StyD4I CCNGG 3 cut(s) 276, 370, 371
StyI CCWWGG 1 cut(s) 762
TaaI ACNGT 3 cut(s) 491, 635, 919
TaiI ACGT 2 cut(s) 531, 808
TaqI TCGA 1 cut(s) 98
TasI AATT 5 cut(s) 86, 235, 428, 773, 921
TatI WGTACW 1 cut(s) 611
Tru1I TTAA 4 cut(s) 503, 617, 657, 870
Tru9I TTAA 4 cut(s) 503, 617, 657, 870
TscAI CASTG 4 cut(s) 99, 156, 603, 638
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 4 cut(s) 245, 404, 437, 692
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 4 cut(s) 539, 618, 723, 879
TspMI CCCGGG 1 cut(s) 371
TspRI CASTG 4 cut(s) 99, 156, 603, 638
Van91I CCANNNNNTGG 1 cut(s) 637
XapI RAATTY 1 cut(s) 773
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XmaI CCCGGG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 593
XmnI GAANNNNTTC 1 cut(s) 714
XspI CTAG 3 cut(s) 12, 42, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.