RchiOBHm_Chr2g0154951

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000939
Physical Location & Seq
Forward (+)
71974868 .. 71975523
656 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52388

Sequence Viewer

Length: 393 bp
ATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAGACAGGGACTAGCAAAACTTCAGGTGTTGAAGCAAATGAGAAAAACAAGGGAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCTCATAAGAAGGAGGGTAGAGCACTGCCAGCTGGGTTGGTTCCAATCGCAGACGATTTTGCTCTGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCAGCCACACCCAAGCCTCAAGGAGATGACCCTCTGGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAACGTTTGGTAATGGGCGAGTTATACACCCCGGGGAAGTGCTTGAAACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.94

Weight (kDa)

7.94

Isoelectric Point (pI)

20.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 344
AclWI GGATC 1 cut(s) 288
AcuI CTGAAG 1 cut(s) 36
AgsI TTSAA 3 cut(s) 62, 339, 386
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
AluBI AGCT 2 cut(s) 11, 158
AluI AGCT 2 cut(s) 11, 158
Alw21I GWGCWC 1 cut(s) 151
AlwI GGATC 1 cut(s) 288
Ama87I CYCGRG 1 cut(s) 371
ApeKI GCWGC 1 cut(s) 245
AsuC2I CCSGG 2 cut(s) 372, 373
AvaI CYCGRG 1 cut(s) 371
AxyI CCTNAGG 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 257
BcnI CCSGG 2 cut(s) 372, 373
BfaI CTAG 2 cut(s) 12, 42
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 2 cut(s) 372, 373
BmeT110I CYCGRG 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 2 cut(s) 372, 373
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 246
BpuMI CCSGG 2 cut(s) 372, 373
BsaJI CCNNGG 3 cut(s) 370, 371, 372
Bse1I ACTGG 1 cut(s) 231
Bse21I CCTNAGG 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 370, 371, 372
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 3 cut(s) 52, 129, 239
BsmFI GGGAC 3 cut(s) 52, 129, 239
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 1 cut(s) 288
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 3 cut(s) 370, 371, 372
BssMI GATC 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 204
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 370, 371
BstV1I GCAGC 1 cut(s) 257
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
Bsu36I CCTNAGG 1 cut(s) 204
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 2 cut(s) 99, 149
Cac8I GCNNGC 1 cut(s) 156
Cfr9I CCCGGG 1 cut(s) 371
CviAII CATG 2 cut(s) 103, 306
CviJI RGCY 5 cut(s) 11, 158, 248, 259, 292
CviKI_1 RGCY 5 cut(s) 11, 158, 248, 259, 292
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 371
FaeI CATG 2 cut(s) 106, 309
FaiI YATR 5 cut(s) 21, 104, 132, 307, 365
FaqI GGGAC 3 cut(s) 52, 129, 239
FatI CATG 2 cut(s) 102, 305
Fnu4HI GCNGC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 2 cut(s) 12, 42
GluI GCNGC 1 cut(s) 246
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 214
HapII CCGG 1 cut(s) 372
Hin1II CATG 2 cut(s) 106, 309
HinfI GANTC 2 cut(s) 227, 312
HpaII CCGG 1 cut(s) 372
Hpy188III TCNNGA 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 130
HpyCH4IV ACGT 2 cut(s) 344, 389
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 2 cut(s) 344, 389
Hsp92II CATG 2 cut(s) 106, 309
Kzo9I GATC 1 cut(s) 280
Lsp1109I GCAGC 1 cut(s) 257
MaeI CTAG 2 cut(s) 12, 42
MaeII ACGT 2 cut(s) 344, 389
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 3 cut(s) 40, 43, 294
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 2 cut(s) 86, 235
MlyI GAGTC 2 cut(s) 221, 321
MnlI CCTC 4 cut(s) 133, 199, 270, 285
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 2 cut(s) 372, 373
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 2 cut(s) 372, 373
NdeII GATC 1 cut(s) 280
NlaIII CATG 2 cut(s) 106, 309
NlaIV GGNNCC 1 cut(s) 168
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 2 cut(s) 221, 320
PpsI GAGTC 2 cut(s) 221, 320
Psp1406I AACGTT 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 168
PsuI RGATCY 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 158
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 1 cut(s) 280
SchI GAGTC 2 cut(s) 221, 321
ScrFI CCNGG 2 cut(s) 372, 373
SduI GDGCHC 1 cut(s) 151
SetI ASST 7 cut(s) 13, 58, 160, 210, 300, 347, 392
SmaI CCCGGG 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
Sse9I AATT 2 cut(s) 86, 235
SspMI CTAG 2 cut(s) 12, 42
StyD4I CCNGG 2 cut(s) 370, 371
TaiI ACGT 2 cut(s) 347, 392
TaqI TCGA 1 cut(s) 98
TasI AATT 2 cut(s) 86, 235
TscAI CASTG 2 cut(s) 99, 156
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 294
TspMI CCCGGG 1 cut(s) 371
TspRI CASTG 2 cut(s) 99, 156
XmaI CCCGGG 1 cut(s) 371
XspI CTAG 2 cut(s) 12, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.