Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000939

Physical Location & Seq

Genomic Coordinates Reverse (-)

26307565 .. 26312290

Gene Structure 4726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTTGCCTTCGAGCTTCTTCATGGCTCTCTTCCCGACCCACTCTCTTTCCCTCCTCCTCCTCCTCCTCAAAGCCCCACCTTTCAAAGCTCTTCTTTTCTCTCAACCCACCCAATCCCAATCCCAATCCCGAATCCGAAATCACGACGTCCCCAGTTGACCCGCCAAGTCCTGGGAATACCGAATTGCCTGCTGCTGTTAAGACTGCAATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAGAAAGGGACTAACAAATCTTCAGGTGTTGAAGCAAATCAGAAAAGCAAGGGAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCCGATAAGAAGGAGGGTAGAGCACTGCCAGCTGGGTTGGTTCCAATCGCAGACGATCTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCACCCACACCCAAGCCTCAAGGAGATGACCCCCGGACGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAACGTGAAGATGTTGAAACTGTGATACACCTGATTTTGATGCTGTGTTTAGGGAAATGGCTTCAAAATCTACTTGATTTTACAAAGGTTTCTTCCTTTTTTTTTGATCAGTTTGGTGGTGGGCGAGTTATACGCCCCGGGGAAGTGCTTGAAACGCAGGAAGAAAAAGCTGCTAAAGAGGAACGAACAAGACAATTAGTTGCTGCTTACAACACTAAAATGGGCTTGAACATTGATCCCAAGCTCAGATTGGACTGTGAGAAGACATTAAAGGATGGTGACTCATTGATGAATGTCGGAAAGCTGAAGGAAGCATTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGGTAAAGAATATGACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

34.08

Weight (kDa)

8.58

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780 AT2G38780
fragaria_vesca	FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000 FvH4_5g29000
malus_domestica	MD02G1293900.v1.1
prunus_persica	Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1 Prupe.2G029800_v2.0.a1
pyrus_communis	pycom02g24770
rosa_chinensis	RchiOBHm_Chr1g0326961 RchiOBHm_Chr2g0113191 RchiOBHm_Chr2g0154951 RchiOBHm_Chr2g0154961 RchiOBHm_Chr4g0400611 RchiOBHm_Chr4g0400621 RchiOBHm_Chr4g0400631 RchiOBHm_Chr7g0221681
rosa_laevigata	RLG00000002138 RLG00000033643 RLG00000033777
rosa_multiflora	Rmu_sc0002824.1_g000035 Rmu_sc0002888.1_g000032 Rmu_sc0003745.1_g000009 Rmu_sc0004762.1_g000007 Rmu_sc0005016.1_g000031
rosa_roxburghii	Rroxscaffold_3G00238120 Rroxscaffold_4G00319400 Rroxscaffold_7G00194290
rosa_rugosa	Rorug07G0203000 Rorug07G0203000
rosa_samantha	Rh2CG244400 Rh2CG512600 Rh2DG248300 Rh4CG299800 Rh5AG377400 Rh5AG377500 Rh5AG465500 Rh5BG484000 Rh5CG508700 Rh6BG168600 Rh7AG343600 Rh7BG333700 Rh7CG361000
rosa_wichuraiana	Rw2G039480 Rw2G044190 Rw3G028860 Rw6G004980 Rw7G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	173
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	782
AcuI	CTGAAG	2 cut(s)	246, 878
AcyI	GRCGYC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	8 cut(s)	87, 272, 551, 569, 617, 704, 781, 907
AjnI	CCWGG	1 cut(s)	172
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	7 cut(s)	17, 91, 221, 368, 722, 796, 856
AluI	AGCT	7 cut(s)	17, 91, 221, 368, 722, 796, 856
Alw21I	GWGCWC	2 cut(s)	361, 457
Alw44I	GTGCAC	1 cut(s)	453
AlwI	GGATC	1 cut(s)	782
Ama87I	CYCGRG	1 cut(s)	689
ApaLI	GTGCAC	1 cut(s)	453
ApeKI	GCWGC	3 cut(s)	194, 722, 755
AsuC2I	CCSGG	3 cut(s)	487, 690, 691
AsuHPI	GGTGA	1 cut(s)	842
AvaI	CYCGRG	1 cut(s)	689
AxyI	CCTNAGG	1 cut(s)	414
BaeGI	GKGCMC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	821
Bbv12I	GWGCWC	2 cut(s)	361, 457
BbvI	GCAGC	3 cut(s)	181, 709, 742
BccI	CCATC	1 cut(s)	821
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	1 cut(s)	174
BclI	TGATCA	1 cut(s)	658
BcnI	CCSGG	3 cut(s)	487, 690, 691
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	3 cut(s)	195, 723, 756
BlsI	GCNGC	3 cut(s)	196, 724, 757
Bme1390I	CCNGG	4 cut(s)	174, 487, 690, 691
BmeT110I	CYCGRG	1 cut(s)	689
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	4 cut(s)	174, 487, 690, 691
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	582
BmuI	ACTGGG	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	821
BpmI	CTGGAG	1 cut(s)	424
Bpu10I	CCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	456
BpuMI	CCSGG	3 cut(s)	487, 690, 691
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	5 cut(s)	173, 485, 688, 689, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	155, 441
Bse21I	CCTNAGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	5 cut(s)	173, 485, 688, 689, 690
BseGI	GGATG	1 cut(s)	832
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	3 cut(s)	405, 413, 811
BseNI	ACTGG	2 cut(s)	155, 441
BseRI	GAGGAG	5 cut(s)	46, 49, 52, 55, 58
BseSI	GKGCMC	1 cut(s)	457
BseXI	GCAGC	3 cut(s)	181, 709, 742
BseYI	CCCAGC	1 cut(s)	368
BsiHKAI	GWGCWC	2 cut(s)	361, 457
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	2 cut(s)	487, 690
BslFI	GGGAC	4 cut(s)	136, 262, 339, 449
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmFI	GGGAC	4 cut(s)	136, 262, 339, 449
BsoBI	CYCGRG	1 cut(s)	689
Bsp1286I	GDGCHC	2 cut(s)	361, 457
Bsp143I	GATC	4 cut(s)	391, 492, 658, 787
BspACI	CCGC	1 cut(s)	164
BspCNI	CTCAG	3 cut(s)	406, 412, 810
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	782
BspQI	GCTCTTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	155, 441
BssECI	CCNNGG	5 cut(s)	173, 485, 688, 689, 690
BssMI	GATC	4 cut(s)	391, 492, 658, 787
BssNI	GRCGYC	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	574, 809
Bst6I	CTCTTC	2 cut(s)	37, 98
BstACI	GRCGYC	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	7, 192, 366
BstDEI	CTNAG	3 cut(s)	399, 414, 797
BstF5I	GGATG	1 cut(s)	832
BstKTI	GATC	4 cut(s)	394, 495, 661, 790
BstMBI	GATC	4 cut(s)	391, 492, 658, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 706
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	4 cut(s)	172, 485, 688, 689
BstSLI	GKGCMC	1 cut(s)	457
BstV1I	GCAGC	3 cut(s)	181, 709, 742
BstV2I	GAAGAC	1 cut(s)	821
Bsu36I	CCTNAGG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	832
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	309, 359
Cac8I	GCNNGC	3 cut(s)	7, 192, 366
Cfr9I	CCCGGG	1 cut(s)	689
CviAII	CATG	3 cut(s)	24, 313, 518
DdeI	CTNAG	3 cut(s)	399, 414, 797
DpnI	GATC	4 cut(s)	393, 494, 660, 789
DpnII	GATC	4 cut(s)	391, 492, 658, 787
Eam1104I	CTCTTC	2 cut(s)	37, 98
EarI	CTCTTC	2 cut(s)	37, 98
Eco57I	CTGAAG	2 cut(s)	246, 878
Eco81I	CCTNAGG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	3 cut(s)	27, 316, 521
FaiI	YATR	8 cut(s)	25, 231, 314, 519, 683, 879, 890, 920
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	4 cut(s)	136, 262, 339, 449
FatI	CATG	3 cut(s)	23, 312, 517
FauI	CCCGC	1 cut(s)	171
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	3 cut(s)	195, 723, 756
FokI	GGATG	1 cut(s)	839
Fsp4HI	GCNGC	3 cut(s)	195, 723, 756
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	3 cut(s)	195, 723, 756
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	424
HapII	CCGG	2 cut(s)	487, 690
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	27, 316, 521
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	4 cut(s)	134, 437, 524, 833
HpaII	CCGG	2 cut(s)	487, 690
HphI	GGTGA	1 cut(s)	842
Hpy166II	GTNNAC	2 cut(s)	160, 455
Hpy188I	TCNGA	4 cut(s)	139, 282, 800, 851
Hpy188III	TCNNGA	3 cut(s)	36, 131, 145
Hpy8I	GTNNAC	2 cut(s)	160, 455
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	3 cut(s)	20, 340, 853
HpyCH4III	ACNGT	2 cut(s)	574, 809
HpyCH4IV	ACGT	2 cut(s)	149, 556
HpyCH4V	TGCA	2 cut(s)	209, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 706
HpyF3I	CTNAG	3 cut(s)	399, 414, 797
HpySE526I	ACGT	2 cut(s)	149, 556
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	27, 316, 521
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	4 cut(s)	391, 492, 658, 787
LguI	GCTCTTC	1 cut(s)	98
Lsp1109I	GCAGC	3 cut(s)	181, 709, 742
LweI	GCATC	1 cut(s)	582
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	2 cut(s)	149, 556
MaeIII	GTNAC	2 cut(s)	830, 897
MalI	GATC	4 cut(s)	393, 494, 660, 789
MboI	GATC	4 cut(s)	391, 492, 658, 787
MhlI	GDGCHC	2 cut(s)	361, 457
MluCI	AATT	4 cut(s)	185, 296, 445, 746
MlyI	GAGTC	3 cut(s)	431, 533, 827
MmeI	TCCRAC	1 cut(s)	829
MseI	TTAA	3 cut(s)	201, 821, 928
MslI	CAYNNNNRTG	1 cut(s)	770
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	2 cut(s)	487, 690
MspR9I	CCNGG	4 cut(s)	174, 487, 690, 691
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	365, 706
NciI	CCSGG	3 cut(s)	487, 690, 691
NdeII	GATC	4 cut(s)	391, 492, 658, 787
NlaIII	CATG	3 cut(s)	27, 316, 521
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	830
PciSI	GCTCTTC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	3 cut(s)	196, 724, 757
PleI	GAGTC	3 cut(s)	431, 532, 827
PpsI	GAGTC	3 cut(s)	431, 532, 827
Psp6I	CCWGG	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	378
PvuII	CAGCTG	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	770
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	201, 821, 928
SatI	GCNGC	3 cut(s)	195, 723, 756
Sau3AI	GATC	4 cut(s)	391, 492, 658, 787
SchI	GAGTC	3 cut(s)	431, 533, 827
ScrFI	CCNGG	4 cut(s)	174, 487, 690, 691
SduI	GDGCHC	2 cut(s)	361, 457
SfaNI	GCATC	1 cut(s)	582
SmaI	CCCGGG	1 cut(s)	691
SmiMI	CAYNNNNRTG	1 cut(s)	770
SmlI	CTYRAG	1 cut(s)	471
SmoI	CTYRAG	1 cut(s)	471
Sse9I	AATT	4 cut(s)	185, 296, 445, 746
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	4 cut(s)	172, 485, 688, 689
TaaI	ACNGT	2 cut(s)	574, 809
TaiI	ACGT	2 cut(s)	152, 559
TaqI	TCGA	2 cut(s)	13, 308
TasI	AATT	4 cut(s)	185, 296, 445, 746
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	3 cut(s)	201, 821, 928
Tru9I	TTAA	3 cut(s)	201, 821, 928
TscAI	CASTG	2 cut(s)	309, 366
TseFI	GTSAC	1 cut(s)	830
TseI	GCWGC	3 cut(s)	194, 722, 755
Tsp45I	GTSAC	1 cut(s)	830
TspDTI	ATGAA	3 cut(s)	12, 506, 857
TspMI	CCCGGG	1 cut(s)	689
TspRI	CASTG	2 cut(s)	309, 366
Van91I	CCANNNNNTGG	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	799
XmaI	CCCGGG	1 cut(s)	689
XspI	CTAG	1 cut(s)	222
ZraI	GACGTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.