Rw6G004980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000939
Physical Location & Seq
Reverse (-)
8163892 .. 8167938
4047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004980.1

Sequence Viewer

Length: 900 bp
ATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAGACAGGGACTAGCAAAACTTCTGGTGTTGAAGCAAATGAGAAAAACAAGGGAAAATTGTTAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCTGATAAGAAGGAGGGTAGAGCACTGCCAGCTGGGTTGGTTCCAATCGCAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCAGTGCAACCACACCCAAGCCTCAAGGAGATAACCCCCTATCTTTACAAGCCAAAGGTTTCTTCATGGGGAAGGTTTCTTTTTTTTATCAGTTTGGTGGTGGGCGAGTTATACACCCCGGGGAAGTGCTTGAAACGCAGGAAGAAAAAGCTGCTAAGGAGGAACGAACAAGACAATTAGTTGCTGCTTACAACACTAAAATGGGCTTGAACATTGATCCCAAGCTCAGATTGGACTGTGAGAAGACATTAAAGGATGGTGACTCATTGATGAACGTCGGAAAGCTGAAGGAAGCATTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGTCTACACTGCATGAAGTTAGTACATTAACATATCGGTACCACTGTATGGAGTCATTACTTAAACAGGGTAAGGTGGTATATCAAGTATTCAAGGCTGCCAGAACCATCAATGAAAGTGTTCGTCTTGAAATGCCTGAGCCAACCATTATCAGGGATGCACTTCCCAAGGTAGTGAAATTTTTTCTGCAAATGACTAATATACAGTTCAGAGATGTATATGACTTCTATTTGGACAACTTGACTTGCAACTTTCAATATTTAAATCATAAGCATAACAATTGGATATGTGCACTTTTGGATGGCATGAAGAAGGTTGTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.84

Weight (kDa)

8.92

Isoelectric Point (pI)

28.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 209 - 254 3.6e-07 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 612
AccB1I GGYRCC 1 cut(s) 612
AccB7I CCANNNNNTGG 1 cut(s) 622
AccI GTMKAC 1 cut(s) 578
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 1 cut(s) 752
AcuI CTGAAG 1 cut(s) 545
AfaI GTAC 2 cut(s) 598, 614
AfiI CCNNNNNNNGG 2 cut(s) 622, 726
AgsI TTSAA 7 cut(s) 62, 371, 448, 574, 667, 704, 830
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 5 cut(s) 11, 158, 389, 463, 523
AluI AGCT 5 cut(s) 11, 158, 389, 463, 523
Alw21I GWGCWC 2 cut(s) 151, 868
Alw44I GTGCAC 1 cut(s) 864
AlwI GGATC 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 356
ApaLI GTGCAC 1 cut(s) 864
ApeKI GCWGC 3 cut(s) 389, 422, 671
ApoI RAATTY 1 cut(s) 752
Asp700I GAANNNNTTC 1 cut(s) 693
Asp718I GGTACC 1 cut(s) 612
AsuC2I CCSGG 2 cut(s) 357, 358
AsuHPI GGTGA 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 356
AxyI CCTNAGG 1 cut(s) 204
BaeGI GKGCMC 1 cut(s) 868
BaeI ACNNNNGTAYC 2 cut(s) 604, 637
BanI GGYRCC 1 cut(s) 612
BbsI GAAGAC 2 cut(s) 38, 488
Bbv12I GWGCWC 2 cut(s) 151, 868
BbvI GCAGC 3 cut(s) 376, 409, 658
BccI CCATC 3 cut(s) 488, 689, 869
BcnI CCSGG 2 cut(s) 357, 358
BfaI CTAG 2 cut(s) 12, 42
BisI GCNGC 3 cut(s) 390, 423, 672
BlsI GCNGC 3 cut(s) 391, 424, 673
Bme1390I CCNGG 2 cut(s) 357, 358
BmeT110I CYCGRG 1 cut(s) 356
BmiI GGNNCC 2 cut(s) 168, 614
BmrFI CCNGG 2 cut(s) 357, 358
BmsI GCATC 1 cut(s) 721
BpiI GAAGAC 2 cut(s) 38, 488
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 3 cut(s) 189, 393, 711
BpuEI CTTGAG 1 cut(s) 246
BpuMI CCSGG 2 cut(s) 357, 358
BsaJI CCNNGG 4 cut(s) 355, 356, 357, 741
Bsc4I CCNNNNNNNGG 2 cut(s) 622, 726
Bse1I ACTGG 1 cut(s) 231
Bse21I CCTNAGG 1 cut(s) 204
BseDI CCNNGG 4 cut(s) 355, 356, 357, 741
BseGI GGATG 3 cut(s) 499, 736, 880
BseLI CCNNNNNNNGG 2 cut(s) 622, 726
BseMII CTCAG 4 cut(s) 195, 203, 478, 702
BseNI ACTGG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 868
BseXI GCAGC 3 cut(s) 376, 409, 658
BseYI CCCAGC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 612
BsiHKAI GWGCWC 2 cut(s) 151, 868
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 3 cut(s) 52, 129, 239
BslI CCNNNNNNNGG 2 cut(s) 622, 726
BsmFI GGGAC 3 cut(s) 52, 129, 239
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 151, 868
Bsp143I GATC 1 cut(s) 454
BspCNI CTCAG 4 cut(s) 196, 202, 477, 703
BspLI GGNNCC 2 cut(s) 168, 614
BspPI GGATC 1 cut(s) 449
BspT107I GGYRCC 1 cut(s) 612
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 4 cut(s) 355, 356, 357, 741
BssMI GATC 1 cut(s) 454
BssT1I CCWWGG 1 cut(s) 741
Bst4CI ACNGT 3 cut(s) 476, 620, 780
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 5 cut(s) 189, 204, 393, 464, 711
BstF5I GGATG 3 cut(s) 499, 736, 880
BstKTI GATC 1 cut(s) 457
BstMBI GATC 1 cut(s) 454
BstMWI GCNNNNNNNGC 2 cut(s) 155, 373
BstSCI CCNGG 2 cut(s) 355, 356
BstSLI GKGCMC 1 cut(s) 868
BstV1I GCAGC 3 cut(s) 376, 409, 658
BstV2I GAAGAC 2 cut(s) 38, 488
Bsu36I CCTNAGG 1 cut(s) 204
BtsCI GGATG 3 cut(s) 499, 736, 880
BtsI GCAGTG 2 cut(s) 149, 581
BtsIMutI CAGTG 4 cut(s) 149, 247, 581, 616
Cac8I GCNNGC 1 cut(s) 156
Cfr9I CCCGGG 1 cut(s) 356
Csp6I GTAC 2 cut(s) 597, 613
CviAII CATG 4 cut(s) 103, 304, 587, 880
CviQI GTAC 2 cut(s) 597, 613
DdeI CTNAG 5 cut(s) 189, 204, 393, 464, 711
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
DraI TTTAAA 1 cut(s) 837
Eco130I CCWWGG 1 cut(s) 741
Eco57I CTGAAG 1 cut(s) 545
Eco81I CCTNAGG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 741
ErhI CCWWGG 1 cut(s) 741
FaeI CATG 4 cut(s) 106, 307, 590, 883
FaqI GGGAC 3 cut(s) 52, 129, 239
FatI CATG 4 cut(s) 102, 303, 586, 879
FblI GTMKAC 1 cut(s) 578
Fnu4HI GCNGC 3 cut(s) 390, 423, 672
FokI GGATG 3 cut(s) 506, 743, 887
Fsp4HI GCNGC 3 cut(s) 390, 423, 672
FspBI CTAG 2 cut(s) 12, 42
GluI GCNGC 3 cut(s) 390, 423, 672
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 214
HapII CCGG 1 cut(s) 357
Hin1II CATG 4 cut(s) 106, 307, 590, 883
HinfI GANTC 3 cut(s) 227, 500, 626
HpaII CCGG 1 cut(s) 357
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 2 cut(s) 579, 866
Hpy188I TCNGA 4 cut(s) 467, 518, 785, 899
Hpy188III TCNNGA 1 cut(s) 701
Hpy8I GTNNAC 2 cut(s) 579, 866
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 4 cut(s) 130, 304, 520, 880
HpyCH4III ACNGT 3 cut(s) 476, 620, 780
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 6 cut(s) 245, 586, 734, 763, 822, 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 373
HpyF3I CTNAG 5 cut(s) 189, 204, 393, 464, 711
HpySE526I ACGT 1 cut(s) 513
Hsp92II CATG 4 cut(s) 106, 307, 590, 883
KpnI GGTACC 1 cut(s) 616
Kzo9I GATC 1 cut(s) 454
Lsp1109I GCAGC 3 cut(s) 376, 409, 658
LweI GCATC 1 cut(s) 721
MaeI CTAG 2 cut(s) 12, 42
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 2 cut(s) 497, 564
MalI GATC 1 cut(s) 456
MboI GATC 1 cut(s) 454
MboII GAAGA 6 cut(s) 40, 43, 292, 392, 493, 895
MfeI CAATTG 1 cut(s) 853
MhlI GDGCHC 2 cut(s) 151, 868
MluCI AATT 5 cut(s) 86, 235, 413, 752, 853
MlyI GAGTC 3 cut(s) 221, 494, 635
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 4 cut(s) 133, 199, 270, 391
MroXI GAANNNNTTC 1 cut(s) 693
MseI TTAA 4 cut(s) 488, 602, 636, 836
MslI CAYNNNNRTG 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 2 cut(s) 357, 358
MunI CAATTG 1 cut(s) 853
MwoI GCNNNNNNNGC 2 cut(s) 155, 373
NciI CCSGG 2 cut(s) 357, 358
NdeII GATC 1 cut(s) 454
NlaIII CATG 4 cut(s) 106, 307, 590, 883
NlaIV GGNNCC 2 cut(s) 168, 614
NmuCI GTSAC 1 cut(s) 497
PdmI GAANNNNTTC 1 cut(s) 693
PflMI CCANNNNNTGG 1 cut(s) 622
PkrI GCNGC 3 cut(s) 391, 424, 673
PleI GAGTC 3 cut(s) 221, 494, 634
PpsI GAGTC 3 cut(s) 221, 494, 634
PspFI CCCAGC 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 168, 614
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 2 cut(s) 598, 614
RsaNI GTAC 2 cut(s) 597, 613
RseI CAYNNNNRTG 1 cut(s) 437
SaqAI TTAA 4 cut(s) 488, 602, 636, 836
SatI GCNGC 3 cut(s) 390, 423, 672
Sau3AI GATC 1 cut(s) 454
SchI GAGTC 3 cut(s) 221, 494, 635
ScrFI CCNGG 2 cut(s) 357, 358
SduI GDGCHC 2 cut(s) 151, 868
SfaNI GCATC 1 cut(s) 721
SmaI CCCGGG 1 cut(s) 358
SmiI ATTTAAAT 1 cut(s) 837
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
Sse9I AATT 5 cut(s) 86, 235, 413, 752, 853
SspI AATATT 1 cut(s) 833
SspMI CTAG 2 cut(s) 12, 42
StyD4I CCNGG 2 cut(s) 355, 356
StyI CCWWGG 1 cut(s) 741
SwaI ATTTAAAT 1 cut(s) 837
TaaI ACNGT 3 cut(s) 476, 620, 780
TaiI ACGT 1 cut(s) 516
TaqI TCGA 1 cut(s) 98
TasI AATT 5 cut(s) 86, 235, 413, 752, 853
TatI WGTACW 1 cut(s) 596
Tru1I TTAA 4 cut(s) 488, 602, 636, 836
Tru9I TTAA 4 cut(s) 488, 602, 636, 836
TscAI CASTG 4 cut(s) 156, 247, 588, 623
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 3 cut(s) 389, 422, 671
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 5 cut(s) 292, 524, 603, 702, 896
TspMI CCCGGG 1 cut(s) 356
TspRI CASTG 4 cut(s) 156, 247, 588, 623
Van91I CCANNNNNTGG 1 cut(s) 622
VneI GTGCAC 1 cut(s) 864
XapI RAATTY 1 cut(s) 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XmaI CCCGGG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 2 cut(s) 12, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.