Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000548

Physical Location & Seq

Genomic Coordinates Reverse (-)

194426 .. 198664

Gene Structure 4239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGAACCGAAGCATACGACGAGGCTATTGAAGCTCTCAAGAAGCTTCTCATCGAGAAGGAAGAGCTAAAGACGGTTGCAGCGGCAAAGGTGGAGCAGATCACAGCGGCTCTTCAGACAGGTACTTCATCCGACAAGAAAGCTTTCGACCCCGTCGAAACCATTAAGCAGGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGTACGGTGAGCTCGCAAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCTTGTTCAGACTCACGTGTGTGTCCATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACATAGCCAACATGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTGAATACGCGGTCTTACACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTGGTGGGATCAAAGGGCTTATGTCTTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAGAGGACTGGGTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGATTCAGCCTTTGAAGATCAATGTGGCCGATGTGAAAGGGAGGCGGTGAATGTTTCACTAGCAAACCTATTGACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGGGAGGCTACTATGACTTCGTCAAGGGTGCTTTTGAGCTTTGGGGACTTGAATTTGGCCTCTCCGAAACTAGCTCTGTTAAAGATGTGGCTACCATACTACATTGGAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

270

Amino Acids

29.5

Weight (kDa)

5.54

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	85 - 243	4.1e-43	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca	FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica	MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica	Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis	pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis	RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata	RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora	Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii	Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa	Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha	Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana	Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	407
AciI	CCGC	4 cut(s)	83, 107, 407, 620
AclWI	GGATC	1 cut(s)	473
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	2 cut(s)	182, 749
AcuI	CTGAAG	1 cut(s)	98
AcvI	CACGTG	1 cut(s)	281
AfaI	GTAC	3 cut(s)	124, 221, 254
AfiI	CCNNNNNNNGG	2 cut(s)	424, 494
AflII	CTTAAG	1 cut(s)	419
AflIII	ACRYGT	2 cut(s)	280, 295
AgsI	TTSAA	6 cut(s)	32, 187, 401, 590, 697, 749
AjnI	CCWGG	1 cut(s)	313
AleI	CACNNNNGTG	1 cut(s)	283
AluBI	AGCT	8 cut(s)	35, 46, 67, 143, 229, 736, 771, 808
AluI	AGCT	8 cut(s)	35, 46, 67, 143, 229, 736, 771, 808
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	473
AoxI	GGCC	2 cut(s)	601, 754
ApeKI	GCWGC	2 cut(s)	80, 392
ApoI	RAATTY	2 cut(s)	182, 749
Asp700I	GAANNNNTTC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	3 cut(s)	236, 451, 634
AvaII	GGWCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	231
BarI	GAAGNNNNNNTAC	4 cut(s)	182, 214, 689, 721
BbrPI	CACGTG	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	92, 404
BccI	CCATC	2 cut(s)	298, 488
BciT130I	CCWGG	1 cut(s)	315
BfaI	CTAG	2 cut(s)	635, 768
BfmI	CTRYAG	1 cut(s)	809
BfrI	CTTAAG	1 cut(s)	419
BisI	GCNGC	4 cut(s)	81, 84, 108, 393
BlsI	GCNGC	4 cut(s)	82, 85, 109, 394
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	7, 354
BmrFI	CCNGG	1 cut(s)	315
BmrI	ACTGGG	1 cut(s)	535
BmsI	GCATC	1 cut(s)	310
BmuI	ACTGGG	1 cut(s)	535
BpuEI	CTTGAG	1 cut(s)	23
BsaAI	YACGTR	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 494
Bse1I	ACTGG	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	128
BseLI	CCNNNNNNNGG	2 cut(s)	424, 494
BseNI	ACTGG	1 cut(s)	530
BseXI	GCAGC	2 cut(s)	92, 404
Bsh1236I	CGCG	1 cut(s)	407
BshFI	GGCC	2 cut(s)	603, 756
BsiHKAI	GWGCWC	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	756
BslI	CCNNNNNNNGG	2 cut(s)	424, 494
BsmFI	GGGAC	1 cut(s)	756
BsnI	GGCC	2 cut(s)	603, 756
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	99, 465, 592
BspACI	CCGC	4 cut(s)	83, 107, 407, 620
BspANI	GGCC	2 cut(s)	603, 756
BspFNI	CGCG	1 cut(s)	407
BspLI	GGNNCC	2 cut(s)	7, 354
BspPI	GGATC	1 cut(s)	473
BspQI	GCTCTTC	2 cut(s)	57, 117
BspTI	CTTAAG	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	530
BssMI	GATC	3 cut(s)	99, 465, 592
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	4 cut(s)	76, 224, 380, 452
Bst6I	CTCTTC	2 cut(s)	57, 117
BstAFI	CTTAAG	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	249, 490
BstF5I	GGATG	1 cut(s)	128
BstFNI	CGCG	1 cut(s)	407
BstKTI	GATC	3 cut(s)	102, 468, 595
BstMBI	GATC	3 cut(s)	99, 465, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	809
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	92, 404
BsuRI	GGCC	2 cut(s)	603, 756
BtsCI	GGATG	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	457, 507
Cac8I	GCNNGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	331
Csp6I	GTAC	3 cut(s)	123, 220, 253
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	3 cut(s)	256, 349, 456
CviQI	GTAC	3 cut(s)	123, 220, 253
DdeI	CTNAG	2 cut(s)	249, 490
DpnI	GATC	3 cut(s)	101, 467, 594
DpnII	GATC	3 cut(s)	99, 465, 592
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	2 cut(s)	57, 117
EarI	CTCTTC	2 cut(s)	57, 117
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	98
Eco72I	CACGTG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	3 cut(s)	259, 352, 459
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	3 cut(s)	255, 348, 455
Fnu4HI	GCNGC	4 cut(s)	81, 84, 108, 393
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	81, 84, 108, 393
FspBI	CTAG	2 cut(s)	635, 768
GluI	GCNGC	4 cut(s)	81, 84, 108, 393
HaeIII	GGCC	2 cut(s)	603, 756
Hin1II	CATG	3 cut(s)	259, 352, 459
HindIII	AAGCTT	2 cut(s)	44, 141
HinfI	GANTC	2 cut(s)	275, 578
HphI	GGTGA	3 cut(s)	236, 451, 634
Hpy166II	GTNNAC	1 cut(s)	542
Hpy188I	TCNGA	5 cut(s)	117, 133, 274, 568, 763
Hpy188III	TCNNGA	4 cut(s)	40, 55, 187, 302
Hpy8I	GTNNAC	1 cut(s)	542
Hpy99I	CGWCG	2 cut(s)	23, 158
HpyAV	CCTTC	6 cut(s)	52, 184, 334, 662, 673, 691
HpyCH4III	ACNGT	4 cut(s)	76, 224, 380, 452
HpyCH4IV	ACGT	2 cut(s)	280, 297
HpyCH4V	TGCA	2 cut(s)	80, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	249, 490
HpySE526I	ACGT	2 cut(s)	280, 297
Hsp92II	CATG	3 cut(s)	259, 352, 459
Kzo9I	GATC	3 cut(s)	99, 465, 592
LguI	GCTCTTC	2 cut(s)	57, 117
LmnI	GCTCC	2 cut(s)	94, 389
LpnPI	CCDG	8 cut(s)	105, 155, 225, 287, 300, 327, 511, 558
Lsp1109I	GCAGC	2 cut(s)	92, 404
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	635, 768
MaeII	ACGT	2 cut(s)	280, 297
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	3 cut(s)	101, 467, 594
MboI	GATC	3 cut(s)	99, 465, 592
MboII	GAAGA	3 cut(s)	74, 104, 602
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	2 cut(s)	182, 749
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	2 cut(s)	156, 367
MnlI	CCTC	6 cut(s)	16, 366, 514, 610, 695, 767
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	3 cut(s)	165, 420, 777
MslI	CAYNNNNRTG	2 cut(s)	283, 437
MspA1I	CMGCKG	2 cut(s)	83, 107
MspCI	CTTAAG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	3 cut(s)	99, 465, 592
NlaIII	CATG	3 cut(s)	259, 352, 459
NlaIV	GGNNCC	2 cut(s)	7, 354
NspI	RCATGY	1 cut(s)	459
OliI	CACNNNNGTG	1 cut(s)	283
PciSI	GCTCTTC	2 cut(s)	57, 117
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	578
PflFI	GACNNNGTC	4 cut(s)	152, 368, 527, 716
PkrI	GCNGC	4 cut(s)	82, 85, 109, 394
PleI	GAGTC	1 cut(s)	269
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	269
Ppu21I	YACGTR	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	313
PspCI	CACGTG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	7, 354
PspPI	GGNCC	1 cut(s)	331
PsyI	GACNNNGTC	4 cut(s)	152, 368, 527, 716
RsaI	GTAC	3 cut(s)	124, 221, 254
RsaNI	GTAC	3 cut(s)	123, 220, 253
RseI	CAYNNNNRTG	2 cut(s)	283, 437
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	2 cut(s)	57, 117
SaqAI	TTAA	3 cut(s)	165, 420, 777
SatI	GCNGC	4 cut(s)	81, 84, 108, 393
Sau3AI	GATC	3 cut(s)	99, 465, 592
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	809
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	2 cut(s)	283, 437
SmlI	CTYRAG	2 cut(s)	38, 419
SmoI	CTYRAG	2 cut(s)	38, 419
Sse9I	AATT	2 cut(s)	182, 749
SsiI	CCGC	4 cut(s)	83, 107, 407, 620
SspMI	CTAG	2 cut(s)	635, 768
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	313
TaaI	ACNGT	4 cut(s)	76, 224, 380, 452
TaiI	ACGT	2 cut(s)	283, 300
TaqI	TCGA	4 cut(s)	54, 147, 156, 363
TasI	AATT	2 cut(s)	182, 749
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	2 cut(s)	86, 110
TfiI	GAWTC	1 cut(s)	578
Tru1I	TTAA	3 cut(s)	165, 420, 777
Tru9I	TTAA	3 cut(s)	165, 420, 777
TscAI	CASTG	2 cut(s)	457, 514
TseI	GCWGC	2 cut(s)	80, 392
TspDTI	ATGAA	3 cut(s)	117, 166, 505
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	2 cut(s)	457, 514
Tth111I	GACNNNGTC	4 cut(s)	152, 368, 527, 716
Vha464I	CTTAAG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	2 cut(s)	182, 749
XceI	RCATGY	1 cut(s)	459
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	2 cut(s)	635, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.