MD10G1022200.v1.1

Reversible hydration of carbon dioxide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000548
Physical Location & Seq
Reverse (-)
2802754 .. 2806410
3657 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1022200.v1.1.491

Sequence Viewer

Length: 774 bp
ATGGCAAGCCAATTAGCTATTCAACGCCTGAAAAATCTCCTCAGTGAGAAGGAAGAGCTGGACGATGTGGTTGCTGCCAAAATTGAGAAGTTGATGGCTGAATTGCAAAGACCTGCAGATGGTCATTTCGACCCAGTTCAAAGGATTGTAGATGGCTTCATCAACTTCAGGGTCAACAAATTCGAAAAATACCCAGATTACTACAAGGAGCTTGCCAATGGACAATGCCCCAAGTTTCTGGTATTTGCATGCTCGGACTCCCGAGTGAGCCCCTCACATATCCTTAGTTTCCAACCTGGGGAGGCCTTCATGGCTCGCAACATTGCAAACATGGTTCCTGCATTCAATCAGCTGAAACACGCAGGAGTTGGAGCAGTTATAGAATATGCTATTACACAACTCCTGGTGACAAATATTTTGGTAATTGGACACAGTCGTTGTGGTGGGATAAAGAGGCTTATGAGTCACCCTGAGGATAACTCTGTTCCCTTTGACTTCATAGATGAATGGGTCAAAATTGGTTTACCCGCCAAGGCTAAGGTTATAGCAAATGGACAAGGTGGCACCACTTTCGAGGAACAATGTGAGGATTGTGCAAGGGAAGCAGTAAATTTGTCGCTAATAAACCTACAAACTTACCCTTACGTTCAAAAGGCGCTCGCAGAGAACAACCTAGCGCTCAAGGGTGGTTACTATGACTTTGTTCATGGGGTTTTGGAGATATGGAATGTTGAGTCGCACAGTTCACCTCCCATCATCGTACCAGCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Pro_CA

Protein Analysis

258

Amino Acids

28.54

Weight (kDa)

5.66

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_CA PF00484 80 - 238 2e-39 Carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 563
AciI CCGC 1 cut(s) 528
AcsI RAATTY 2 cut(s) 179, 610
AcuI CTGAAG 1 cut(s) 151
AfaI GTAC 1 cut(s) 762
AfeI AGCGCT 1 cut(s) 678
AfiI CCNNNNNNNGG 2 cut(s) 119, 298
AgsI TTSAA 4 cut(s) 23, 140, 346, 650
AjnI CCWGG 2 cut(s) 295, 402
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 4 cut(s) 17, 58, 211, 352
AluI AGCT 4 cut(s) 17, 58, 211, 352
Ama87I CYCGRG 1 cut(s) 261
Aor51HI AGCGCT 1 cut(s) 678
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 179, 610
ArsI GACNNNNNNTTYG 2 cut(s) 400, 432
AspLEI GCGC 2 cut(s) 658, 679
AsuHPI GGTGA 3 cut(s) 418, 458, 738
AsuII TTCGAA 1 cut(s) 183
AvaI CYCGRG 1 cut(s) 261
AxyI CCTNAGG 1 cut(s) 471
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 61
BccI CCATC 4 cut(s) 88, 113, 146, 761
BcgI CGANNNNNNTGC 4 cut(s) 53, 87, 553, 587
BciT130I CCWGG 2 cut(s) 297, 404
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 1 cut(s) 114
BfoI RGCGCY 2 cut(s) 659, 680
BfuAI ACCTGC 1 cut(s) 121
BglI GCCNNNNNGGC 1 cut(s) 311
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 297, 404
BmeT110I CYCGRG 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 336, 565
BmrFI CCNGG 2 cut(s) 297, 404
BmrI ACTGGG 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 464, 496
Bpu10I CCTNAGC 1 cut(s) 537
Bpu14I TTCGAA 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 665
BsaJI CCNNGG 2 cut(s) 296, 531
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 298
Bse1I ACTGG 1 cut(s) 134
Bse21I CCTNAGG 1 cut(s) 471
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 2 cut(s) 297, 404
BseDI CCNNGG 2 cut(s) 296, 531
BseLI CCNNNNNNNGG 2 cut(s) 119, 298
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 55, 462
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 61
BshFI GGCC 1 cut(s) 305
BshNI GGYRCC 1 cut(s) 563
BsiHKCI CYCGRG 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 119, 298
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 261
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 272
BspACI CCGC 1 cut(s) 528
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 2 cut(s) 54, 463
BspLI GGNNCC 2 cut(s) 336, 565
BspMAI CTGCAG 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 121
BspQI GCTCTTC 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 321
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 296, 531
BssT1I CCWWGG 1 cut(s) 531
Bst2UI CCWGG 2 cut(s) 297, 404
Bst4CI ACNGT 2 cut(s) 434, 743
Bst6I CTCTTC 1 cut(s) 48
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 5 cut(s) 7, 213, 250, 316, 660
BstDEI CTNAG 4 cut(s) 41, 284, 471, 537
BstH2I RGCGCY 2 cut(s) 659, 680
BstHHI GCGC 2 cut(s) 658, 679
BstMWI GCNNNNNNNGC 2 cut(s) 311, 602
BstNI CCWGG 2 cut(s) 297, 404
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 295, 402
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 238
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 49
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 5 cut(s) 7, 213, 250, 316, 660
CfoI GCGC 2 cut(s) 658, 679
Csp6I GTAC 1 cut(s) 761
CviAII CATG 4 cut(s) 249, 310, 331, 707
CviQI GTAC 1 cut(s) 761
DdeI CTNAG 4 cut(s) 41, 284, 471, 537
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 531
Eco147I AGGCCT 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 272
Eco47III AGCGCT 1 cut(s) 678
Eco57I CTGAAG 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 295, 402
EcoT14I CCWWGG 1 cut(s) 531
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 4 cut(s) 252, 313, 334, 710
FatI CATG 4 cut(s) 248, 309, 330, 706
FauI CCCGC 1 cut(s) 535
Fnu4HI GCNGC 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 674
GlaI GCGC 2 cut(s) 657, 678
GluI GCNGC 1 cut(s) 75
HaeII RGCGCY 2 cut(s) 659, 680
HaeIII GGCC 1 cut(s) 305
HhaI GCGC 2 cut(s) 658, 679
Hin1II CATG 4 cut(s) 252, 313, 334, 710
Hin6I GCGC 2 cut(s) 656, 677
HinP1I GCGC 2 cut(s) 656, 677
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 3 cut(s) 257, 463, 734
HphI GGTGA 3 cut(s) 418, 458, 738
Hpy166II GTNNAC 3 cut(s) 175, 524, 746
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 1 cut(s) 261
Hpy8I GTNNAC 3 cut(s) 175, 524, 746
HpyAV CCTTC 2 cut(s) 43, 316
HpyCH4III ACNGT 2 cut(s) 434, 743
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 6 cut(s) 106, 116, 248, 326, 341, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 602
HpyF3I CTNAG 4 cut(s) 41, 284, 471, 537
HpySE526I ACGT 1 cut(s) 645
Hsp92II CATG 4 cut(s) 252, 313, 334, 710
HspAI GCGC 2 cut(s) 656, 677
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 2 cut(s) 208, 371
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 1 cut(s) 674
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 3 cut(s) 406, 464, 689
MboII GAAGA 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 7 cut(s) 11, 81, 101, 179, 423, 516, 610
MlyI GAGTC 3 cut(s) 251, 472, 743
MmeI TCCRAC 2 cut(s) 316, 349
MnlI CCTC 8 cut(s) 50, 283, 295, 447, 466, 568, 580, 759
MseI TTAA 1 cut(s) 772
MspA1I CMGCKG 1 cut(s) 352
MspR9I CCNGG 2 cut(s) 297, 404
Mva1269I GAATGC 1 cut(s) 341
MvaI CCWGG 2 cut(s) 297, 404
MwoI GCNNNNNNNGC 2 cut(s) 311, 602
NlaIII CATG 4 cut(s) 252, 313, 334, 710
NlaIV GGNNCC 2 cut(s) 336, 565
NmuCI GTSAC 2 cut(s) 406, 464
NspI RCATGY 1 cut(s) 252
NspV TTCGAA 1 cut(s) 183
PaeI GCATGC 1 cut(s) 252
PceI AGGCCT 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 48
PctI GAATGC 1 cut(s) 341
PflFI GACNNNGTC 1 cut(s) 432
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 3 cut(s) 251, 471, 742
PpsI GAGTC 3 cut(s) 251, 471, 742
Psp6I CCWGG 2 cut(s) 295, 402
PspGI CCWGG 2 cut(s) 295, 402
PspN4I GGNNCC 2 cut(s) 336, 565
PstI CTGCAG 1 cut(s) 118
PsyI GACNNNGTC 1 cut(s) 432
PvuII CAGCTG 1 cut(s) 352
RsaI GTAC 1 cut(s) 762
RsaNI GTAC 1 cut(s) 761
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 772
SatI GCNGC 1 cut(s) 75
SchI GAGTC 3 cut(s) 251, 472, 743
ScrFI CCNGG 2 cut(s) 297, 404
SduI GDGCHC 1 cut(s) 272
SfcI CTRYAG 1 cut(s) 114
SfuI TTCGAA 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SphI GCATGC 1 cut(s) 252
Sse9I AATT 7 cut(s) 11, 81, 101, 179, 423, 516, 610
SseBI AGGCCT 1 cut(s) 305
SsiI CCGC 1 cut(s) 528
SspI AATATT 1 cut(s) 415
SspMI CTAG 1 cut(s) 674
StuI AGGCCT 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 295, 402
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 2 cut(s) 434, 743
TaiI ACGT 1 cut(s) 648
TaqI TCGA 3 cut(s) 129, 183, 573
TasI AATT 7 cut(s) 11, 81, 101, 179, 423, 516, 610
Tru1I TTAA 1 cut(s) 772
Tru9I TTAA 1 cut(s) 772
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 2 cut(s) 406, 464
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 2 cut(s) 406, 464
TspDTI ATGAA 5 cut(s) 148, 298, 487, 519, 695
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 432
XapI RAATTY 2 cut(s) 179, 610
XceI RCATGY 1 cut(s) 252
XspI CTAG 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.