MD10G1022000.v1.1

Reversible hydration of carbon dioxide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000548
Physical Location & Seq
Reverse (-)
2752131 .. 2753419
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1022000.v1.1.491

Sequence Viewer

Length: 504 bp
ATGATTAATAGCTGGTCCTTCACTATCTTTAACAGCTCGGACTCCCGAGTGAGCCCCTCACATATCCTTAGTTTCCAACCTGGGGAGGCCTTCATGGCTCGCAACATTGCAAACATGGTTCCTGCATTCAGTCAGGTGACAAATATTTTGGTAATTGGACACAGTCGTTGTGGTGGGATAAAGAGGCTTATGAGTCACCCTGAGGATAACTCTGTTCCCTTTGACTTCATAGATGAATGGGTCAAAATTGGTTTACCCGCCAAGGCTAAGGTTATAGCAAATGGACAAGGTGGCACCACTTTCGAGGAACAATGTGAGGATTGTGCAAGGGAAGCAGTAAATTTGTCGCTAATAAACCTACAAACTTACCCTTACGTTCAAAAGGCGCTCGCAGAGAACAACCTAGCGCTCAAGGGTGGTTACTATGACTTTGTTCATGGGGTTTTGGAGCTATGGGACGTTGAGTCGCACATTTCACCTCCCATCATCCTACCAGCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Pro_CA

Protein Analysis

168

Amino Acids

18.42

Weight (kDa)

5.25

Isoelectric Point (pI)

61.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_CA PF00484 10 - 148 2.1e-26 Carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AciI CCGC 1 cut(s) 258
AcsI RAATTY 1 cut(s) 340
AfeI AGCGCT 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 1 cut(s) 380
AhdI GACNNNNNGTC 1 cut(s) 463
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 3 cut(s) 12, 36, 451
AluI AGCT 3 cut(s) 12, 36, 451
Ama87I CYCGRG 1 cut(s) 45
Aor51HI AGCGCT 1 cut(s) 408
AoxI GGCC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 340
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
AseI ATTAAT 1 cut(s) 6
AspLEI GCGC 2 cut(s) 388, 409
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 3 cut(s) 148, 188, 468
AvaI CYCGRG 1 cut(s) 45
AvaII GGWCC 1 cut(s) 15
AxyI CCTNAGG 1 cut(s) 201
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 1 cut(s) 56
BccI CCATC 1 cut(s) 491
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 1 cut(s) 81
BfaI CTAG 1 cut(s) 404
BfoI RGCGCY 2 cut(s) 389, 410
BglI GCCNNNNNGGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 15
BmeRI GACNNNNNGTC 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 2 cut(s) 120, 295
BmrFI CCNGG 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 194, 226
Bpu10I CCTNAGC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 80, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse21I CCTNAGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 80, 261
BseGI GGATG 1 cut(s) 486
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 192
BshFI GGCC 1 cut(s) 89
BshNI GGYRCC 1 cut(s) 293
BsiHKCI CYCGRG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 470
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 56
BspACI CCGC 1 cut(s) 258
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 120, 295
BspT107I GGYRCC 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 80, 261
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 100, 390
BstDEI CTNAG 3 cut(s) 68, 201, 267
BstF5I GGATG 1 cut(s) 486
BstH2I RGCGCY 2 cut(s) 389, 410
BstHHI GCGC 2 cut(s) 388, 409
BstMWI GCNNNNNNNGC 2 cut(s) 95, 332
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
Bsu36I CCTNAGG 1 cut(s) 201
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 486
Cac8I GCNNGC 2 cut(s) 100, 390
CfoI GCGC 2 cut(s) 388, 409
Cfr13I GGNCC 1 cut(s) 15
CviAII CATG 3 cut(s) 94, 115, 437
CviJI RGCY 8 cut(s) 12, 36, 54, 89, 98, 187, 266, 451
CviKI_1 RGCY 8 cut(s) 12, 36, 54, 89, 98, 187, 266, 451
DdeI CTNAG 3 cut(s) 68, 201, 267
DriI GACNNNNNGTC 1 cut(s) 463
Eam1105I GACNNNNNGTC 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 261
Eco147I AGGCCT 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 15
Eco47III AGCGCT 1 cut(s) 408
Eco81I CCTNAGG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 3 cut(s) 97, 118, 440
FaiI YATR 9 cut(s) 63, 95, 116, 191, 230, 275, 426, 438, 454
FaqI GGGAC 1 cut(s) 470
FatI CATG 3 cut(s) 93, 114, 436
FauI CCCGC 1 cut(s) 265
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 1 cut(s) 56
FspBI CTAG 1 cut(s) 404
GlaI GCGC 2 cut(s) 387, 408
HaeII RGCGCY 2 cut(s) 389, 410
HaeIII GGCC 1 cut(s) 89
HhaI GCGC 2 cut(s) 388, 409
Hin1II CATG 3 cut(s) 97, 118, 440
Hin6I GCGC 2 cut(s) 386, 407
HinP1I GCGC 2 cut(s) 386, 407
HinfI GANTC 3 cut(s) 41, 193, 464
HphI GGTGA 3 cut(s) 148, 188, 468
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 1 cut(s) 45
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 28, 100
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 2 cut(s) 375, 459
HpyCH4V TGCA 3 cut(s) 110, 125, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 332
HpyF3I CTNAG 3 cut(s) 68, 201, 267
HpySE526I ACGT 2 cut(s) 375, 459
Hsp92II CATG 3 cut(s) 97, 118, 440
HspAI GCGC 2 cut(s) 386, 407
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 5 cut(s) 66, 93, 119, 135, 213
MaeI CTAG 1 cut(s) 404
MaeII ACGT 2 cut(s) 375, 459
MaeIII GTNAC 3 cut(s) 136, 194, 419
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 3 cut(s) 153, 246, 340
MlyI GAGTC 3 cut(s) 35, 202, 473
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 7 cut(s) 67, 79, 177, 196, 298, 310, 489
MseI TTAA 3 cut(s) 6, 30, 502
MspR9I CCNGG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 95, 332
NlaIII CATG 3 cut(s) 97, 118, 440
NlaIV GGNNCC 2 cut(s) 120, 295
NmuCI GTSAC 2 cut(s) 136, 194
PceI AGGCCT 1 cut(s) 89
PctI GAATGC 1 cut(s) 125
PflFI GACNNNGTC 1 cut(s) 162
PleI GAGTC 3 cut(s) 35, 201, 472
PpsI GAGTC 3 cut(s) 35, 201, 472
PshBI ATTAAT 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 120, 295
PspPI GGNCC 1 cut(s) 15
PsyI GACNNNGTC 1 cut(s) 162
SaqAI TTAA 3 cut(s) 6, 30, 502
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 3 cut(s) 35, 202, 473
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 56
SinI GGWCC 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 3 cut(s) 153, 246, 340
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 1 cut(s) 258
SspI AATATT 1 cut(s) 145
SspMI CTAG 1 cut(s) 404
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 2 cut(s) 378, 462
TaqI TCGA 1 cut(s) 303
TasI AATT 3 cut(s) 153, 246, 340
Tru1I TTAA 3 cut(s) 6, 30, 502
Tru9I TTAA 3 cut(s) 6, 30, 502
TseFI GTSAC 2 cut(s) 136, 194
Tsp45I GTSAC 2 cut(s) 136, 194
TspDTI ATGAA 4 cut(s) 82, 217, 249, 425
Tth111I GACNNNGTC 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 15
VspI ATTAAT 1 cut(s) 6
XapI RAATTY 1 cut(s) 340
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.