Rh5CG458200

carbonate dehydratase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000548
Physical Location & Seq
Reverse (-)
63648227 .. 63650178
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG458200.1

Sequence Viewer

Length: 693 bp
ATGAGCACTGAGAATGAAAACCAGGATGATGTGGTTGCTACTGAAACTGAGAGCCTGGAAGATGACCCAGTTCAATCAATTTTAGACGGGTTCAAGCACTTCAAGACCAACTTTTACGACACAAACCCAGAGTTGTTCAACGAGCTTGCCCTAGCACAAAGCCCCAAGTTTTTGGTATTTGCATGCTCGGATTCCCGAGTGAGTCCCTCGCATGTTCTTCATTGCACACCTGGACAAGCCTTTCTGGTTCGCAACATTGCTAACTTGGTTCCTGCATATGACCAGCTAAGGTACACAGGAACTGGAGCAACCATTGAGTATGCTGTAGAAGAACTCGGGGTAGAAAACATTTTGATAGTGGGACACAGTAGTTGCGGAGGAATAAAAAGGCTAATGTCTTATCCCGAGGATGGTTCCGCTCCACTGGTCTTTATAGATGATTGGATGAAAATGGCTTTACCTGTCAAGACAAAGGTTATTGCGGAAGCTGGCGATACCGATTTCCAGGAACAATGTGATCGTTGCGCAAGGAAAGCAGTAAATTTGTCATTGACAAACCTACTCACATATCCCTTCGTTCAAGAGGCACACTCGGAGAAAAAACTAGCACTTCGGGGTGCTTACTATGACTTTGTCAACGGACGTTTCGAGCTCTGGGAGCATGGTTCCGACAACATCATCATAGCACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Pro_CA

Protein Analysis

230

Amino Acids

25.62

Weight (kDa)

4.65

Isoelectric Point (pI)

59.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_CA PF00484 58 - 215 3.1e-42 Carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 526
AccBSI CCGCTC 1 cut(s) 419
AciI CCGC 3 cut(s) 375, 417, 482
AcsI RAATTY 1 cut(s) 541
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 410
AgsI TTSAA 5 cut(s) 74, 94, 103, 139, 581
AjnI CCWGG 4 cut(s) 21, 54, 229, 504
AluBI AGCT 4 cut(s) 145, 286, 488, 652
AluI AGCT 4 cut(s) 145, 286, 488, 652
Alw21I GWGCWC 2 cut(s) 8, 654
AlwNI CAGNNNCTG 1 cut(s) 302
Ama87I CYCGRG 3 cut(s) 195, 335, 404
ApoI RAATTY 1 cut(s) 541
AspLEI GCGC 1 cut(s) 527
AvaI CYCGRG 3 cut(s) 195, 335, 404
BanII GRGCYC 1 cut(s) 654
Bbv12I GWGCWC 2 cut(s) 8, 654
BccI CCATC 1 cut(s) 404
BciT130I CCWGG 4 cut(s) 23, 56, 231, 506
BfaI CTAG 2 cut(s) 152, 605
BfmI CTRYAG 1 cut(s) 324
Bme1390I CCNGG 4 cut(s) 23, 56, 231, 506
BmeT110I CYCGRG 3 cut(s) 195, 335, 404
BmiI GGNNCC 3 cut(s) 270, 415, 667
BmrFI CCNGG 4 cut(s) 23, 56, 231, 506
BmrI ACTGGG 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 62
BplI GAGNNNNNCTC 2 cut(s) 575, 607
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 405
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse1I ACTGG 3 cut(s) 68, 307, 429
Bse3DI GCAATG 2 cut(s) 220, 255
BseBI CCWGG 4 cut(s) 23, 56, 231, 506
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 3 cut(s) 31, 415, 450
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMI GCAATG 2 cut(s) 220, 255
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 3 cut(s) 68, 307, 429
BsiHKAI GWGCWC 2 cut(s) 8, 654
BsiHKCI CYCGRG 3 cut(s) 195, 335, 404
BslFI GGGAC 2 cut(s) 189, 375
BslI CCNNNNNNNGG 1 cut(s) 410
BsmFI GGGAC 2 cut(s) 189, 375
BsoBI CYCGRG 3 cut(s) 195, 335, 404
Bsp1286I GDGCHC 2 cut(s) 8, 654
Bsp143I GATC 1 cut(s) 517
BspACI CCGC 3 cut(s) 375, 417, 482
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 3 cut(s) 270, 415, 667
BsrBI CCGCTC 1 cut(s) 419
BsrDI GCAATG 2 cut(s) 220, 255
BsrI ACTGG 3 cut(s) 68, 307, 429
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 1 cut(s) 517
Bst2UI CCWGG 4 cut(s) 23, 56, 231, 506
Bst4CI ACNGT 1 cut(s) 368
BstC8I GCNNGC 3 cut(s) 147, 184, 490
BstDEI CTNAG 4 cut(s) 9, 48, 287, 690
BstF5I GGATG 3 cut(s) 31, 415, 450
BstHHI GCGC 1 cut(s) 527
BstKTI GATC 1 cut(s) 520
BstMBI GATC 1 cut(s) 517
BstMWI GCNNNNNNNGC 2 cut(s) 533, 658
BstNI CCWGG 4 cut(s) 23, 56, 231, 506
BstNSI RCATGY 2 cut(s) 186, 215
BstSCI CCNGG 4 cut(s) 21, 54, 229, 504
BstSFI CTRYAG 1 cut(s) 324
BstXI CCANNNNNNTGG 1 cut(s) 172
BtsCI GGATG 3 cut(s) 31, 415, 450
BtsIMutI CAGTG 2 cut(s) 6, 422
Cac8I GCNNGC 3 cut(s) 147, 184, 490
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 1 cut(s) 527
Csp6I GTAC 1 cut(s) 292
CviAII CATG 3 cut(s) 183, 212, 662
CviJI RGCY 9 cut(s) 54, 145, 162, 239, 286, 391, 455, 488, 652
CviKI_1 RGCY 9 cut(s) 54, 145, 162, 239, 286, 391, 455, 488, 652
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 4 cut(s) 9, 48, 287, 690
DpnI GATC 1 cut(s) 519
DpnII GATC 1 cut(s) 517
Ecl136II GAGCTC 1 cut(s) 652
Eco24I GRGCYC 1 cut(s) 654
Eco53kI GAGCTC 1 cut(s) 652
Eco88I CYCGRG 3 cut(s) 195, 335, 404
EcoICRI GAGCTC 1 cut(s) 652
EcoRII CCWGG 4 cut(s) 21, 54, 229, 504
EcoT38I GRGCYC 1 cut(s) 654
FaeI CATG 3 cut(s) 186, 215, 665
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 2 cut(s) 189, 375
FatI CATG 3 cut(s) 182, 211, 661
FauNDI CATATG 1 cut(s) 277
FokI GGATG 3 cut(s) 38, 422, 457
FriOI GRGCYC 1 cut(s) 654
FspBI CTAG 2 cut(s) 152, 605
FspI TGCGCA 1 cut(s) 526
GlaI GCGC 1 cut(s) 526
GsuI CTGGAG 1 cut(s) 324
HhaI GCGC 1 cut(s) 527
Hin1II CATG 3 cut(s) 186, 215, 665
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HinfI GANTC 2 cut(s) 191, 202
Hpy166II GTNNAC 2 cut(s) 294, 637
Hpy188I TCNGA 3 cut(s) 190, 595, 670
Hpy188III TCNNGA 5 cut(s) 103, 195, 404, 466, 581
Hpy8I GTNNAC 2 cut(s) 294, 637
HpyAV CCTTC 1 cut(s) 583
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 1 cut(s) 643
HpyCH4V TGCA 3 cut(s) 182, 225, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 533, 658
HpyF3I CTNAG 4 cut(s) 9, 48, 287, 690
HpySE526I ACGT 1 cut(s) 643
Hsp92II CATG 3 cut(s) 186, 215, 665
HspAI GCGC 1 cut(s) 525
Kzo9I GATC 1 cut(s) 517
LmnI GCTCC 3 cut(s) 305, 424, 658
MaeI CTAG 2 cut(s) 152, 605
MaeII ACGT 1 cut(s) 643
MalI GATC 1 cut(s) 519
MbiI CCGCTC 1 cut(s) 419
MboI GATC 1 cut(s) 517
MboII GAAGA 3 cut(s) 71, 209, 341
MhlI GDGCHC 2 cut(s) 8, 654
MluCI AATT 2 cut(s) 78, 541
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 693
MnlI CCTC 4 cut(s) 217, 371, 400, 577
MspR9I CCNGG 4 cut(s) 23, 56, 231, 506
MvaI CCWGG 4 cut(s) 23, 56, 231, 506
MwoI GCNNNNNNNGC 2 cut(s) 533, 658
NdeI CATATG 1 cut(s) 277
NdeII GATC 1 cut(s) 517
NlaIII CATG 3 cut(s) 186, 215, 665
NlaIV GGNNCC 3 cut(s) 270, 415, 667
NsbI TGCGCA 1 cut(s) 526
NspI RCATGY 2 cut(s) 186, 215
PaeI GCATGC 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 645
PfeI GAWTC 1 cut(s) 191
PflFI GACNNNGTC 1 cut(s) 632
PfoI TCCNGGA 1 cut(s) 504
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 654
Psp6I CCWGG 4 cut(s) 21, 54, 229, 504
PspGI CCWGG 4 cut(s) 21, 54, 229, 504
PspN4I GGNNCC 3 cut(s) 270, 415, 667
PstNI CAGNNNCTG 1 cut(s) 302
PsyI GACNNNGTC 1 cut(s) 632
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SacI GAGCTC 1 cut(s) 654
Sau3AI GATC 1 cut(s) 517
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 4 cut(s) 23, 56, 231, 506
SduI GDGCHC 2 cut(s) 8, 654
SfcI CTRYAG 1 cut(s) 324
SphI GCATGC 1 cut(s) 186
Sse9I AATT 2 cut(s) 78, 541
SsiI CCGC 3 cut(s) 375, 417, 482
SspMI CTAG 2 cut(s) 152, 605
SstI GAGCTC 1 cut(s) 654
StyD4I CCNGG 4 cut(s) 21, 54, 229, 504
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 1 cut(s) 646
TaqI TCGA 1 cut(s) 648
TasI AATT 2 cut(s) 78, 541
TfiI GAWTC 1 cut(s) 191
TscAI CASTG 2 cut(s) 13, 429
TspDTI ATGAA 3 cut(s) 30, 209, 461
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 2 cut(s) 13, 429
Tth111I GACNNNGTC 1 cut(s) 632
XapI RAATTY 1 cut(s) 541
XceI RCATGY 2 cut(s) 186, 215
XspI CTAG 2 cut(s) 152, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.