Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000548

Physical Location & Seq

Genomic Coordinates Forward (+)

68357688 .. 68359729

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0556800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGTCGTTCCTATTGCCACCCACTATTGCTCTGAAATCATCACAGTTCAACTATTACTTGAACTACAGCAATGATTCTGATTCCGAGAAGCATGGCTCTCTCAAATTCAACGGAGCGAATGTCTTCAGCTCGTTAGCAAAGTTCCAAGTGGTGACGGCCAATACTGGGACGGGACTCGTACATATAAGATGCTGTCACAACAAAAAGTTCCTGCGAATGAGAACTGAAGGCGATGTCCACCTTTCTCCGGAGGCTGACGAACCAGAGGAGGACCAATCCAAATGGTCGTGTACACTATTTGAGCCTCGACTAGCTGCTGATGGCAACCCCGACAAGGCCCGGTTGTTCCATGTTCAATCAAAAAAATATGCAACAGCATGGGACGAAGGTGGAGAAAAGTTCTCGAGACTACATGCCGATCAGATTGATCAGGGTACCTTTGAGATCATTGACTTGGAGTCACTGGTGATATTGCCAAAGCATGTGGCCTTCAAAGCCGGCAACAACCTTTACCTTCGGCATGCGGACAGTAATCAGCTCAGGTTCATGTCCACCGATAAGGGGGTTCCTGAGTCGTGGTTCGAAGTGTCCACAGATGGCGATGGAAGGGTGAAAATCAAGGTGTTCAACAGCTTGAGCAACAACTACCTGAGGTTCAGCGATGCAGCCTACGGCAACTGCGTTTTTGCTGATGGAAACTCCAATGGCTACCCACCTCCCACCTTGTTTTGGCCAGTCAAGGTCGACAATAGTACGGTCGCTCTCAAATGCTTGAGCAACGACAAATTTTGCAGCCGGCACACCGGTTATATACAAGACGGTCTGAACGTGAACGAGACTAGTACCACCATTTCAAACTTGTCACGCTTCGGGCTGGAAGAGCTTTTTCTCTCTAGGAGAATATACAATACCGACTTCGACCTTAAGAATGCCATAATCTACGGCGAGACCCCGGTCACCATGGCCACTGCAAATGCCACCAACAACACCTCAGTAGACAACACTGTGGAATTCAAGTTTGCTTACACGGAAAGTAAGAGCTGCATGTGGAGTGCCAGCCACTCGTGGATGGTGGGCGTGAGTGCCACCGTCGACTTCAAAGTTCCGTTCATCGGCGGTACTGAGGTCACTGTTTCCGCAGAATATTCCGGATCATACGAGTGGGGAGAGACAATTACATCCGAAAACACATTGGAGACCACCTACACGGTTACAGTGCCGGCACACACTTCTATATCTGTGAGCCTGATGGCAACCAAGGGAAAATGCGACGTGCCTTACTCGTATTATCAGCGGGACGTGCTTTATAACGGTAAAACTGTTGTCTATAAGAAAGATGATGGGCTGTACACGGGTGTTAATTCATACAACTTCCGTTACGAGGTTACCACACAGAAAGAGCCAGATTCTACAGCTGCTGATTCACCGCCTTCTGAGCAGTGGTTTCCGGATCCATCAATCTTCCCATCAAAACAACAAAAGATACCTCTACCCATGCCATTTGGATCAACCACAATGCAAAGCCCGGTGACCTCAACCACCGCCCCGAAAAAAGAGTTGTCAATGAAGATACAGCAGCTCGATCTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

530

Amino Acids

59.14

Weight (kDa)

5.56

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agglutinin	PF07468	5 - 151	4.7e-20	Agglutinin domain
Aerolysin	PF01117	307 - 429	1.5e-09	Aerolysin toxin
ETX_MTX2	PF03318	316 - 428	3.5e-08	Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca	FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica	MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica	Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis	pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis	RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata	RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora	Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii	Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa	Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha	Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana	Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1308
Acc65I	GGTACC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	434
AccI	GTMKAC	3 cut(s)	744, 996, 1092
AccIII	TCCGGA	3 cut(s)	247, 1148, 1447
AciI	CCGC	6 cut(s)	524, 1116, 1137, 1294, 1427, 1542
AclWI	GGATC	4 cut(s)	1159, 1445, 1458, 1513
AcoI	YGGCCR	3 cut(s)	156, 731, 963
AcsI	RAATTY	3 cut(s)	104, 785, 1010
AcuI	CTGAAG	2 cut(s)	109, 246
AfaI	GTAC	7 cut(s)	180, 292, 436, 754, 844, 1120, 1349
AfiI	CCNNNNNNNGG	7 cut(s)	165, 247, 334, 561, 729, 1112, 1381
AflII	CTTAAG	1 cut(s)	923
AgeI	ACCGGT	1 cut(s)	803
AgsI	TTSAA	9 cut(s)	49, 61, 109, 356, 493, 628, 855, 1015, 1099
AhdI	GACNNNNNGTC	1 cut(s)	457
AhlI	ACTAGT	1 cut(s)	839
AjiI	CACGTC	2 cut(s)	1273, 1300
AluBI	AGCT	8 cut(s)	129, 314, 538, 633, 883, 1041, 1415, 1579
AluI	AGCT	8 cut(s)	129, 314, 538, 633, 883, 1041, 1415, 1579
Alw26I	GTCTC	5 cut(s)	400, 830, 941, 1163, 1190
AlwI	GGATC	4 cut(s)	1159, 1445, 1458, 1513
AlwNI	CAGNNNCTG	1 cut(s)	1418
Ama87I	CYCGRG	1 cut(s)	403
Aor13HI	TCCGGA	3 cut(s)	247, 1148, 1447
AoxI	GGCC	5 cut(s)	156, 336, 486, 731, 963
ApeKI	GCWGC	6 cut(s)	314, 665, 792, 1041, 1415, 1576
ApoI	RAATTY	3 cut(s)	104, 785, 1010
AsiGI	ACCGGT	1 cut(s)	803
Asp700I	GAANNNNTTC	1 cut(s)	122
Asp718I	GGTACC	1 cut(s)	434
AspS9I	GGNCC	2 cut(s)	271, 337
AsuC2I	CCSGG	3 cut(s)	340, 953, 1526
AsuHPI	GGTGA	6 cut(s)	163, 478, 622, 949, 1416, 1540
AsuII	TTCGAA	1 cut(s)	582
AvaI	CYCGRG	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	271
AxyI	CCTNAGG	1 cut(s)	650
BaeI	ACNNNNGTAYC	2 cut(s)	1110, 1143
BalI	TGGCCA	2 cut(s)	733, 965
BamHI	GGATCC	1 cut(s)	1450
BanI	GGYRCC	1 cut(s)	434
BauI	CACGAG	1 cut(s)	1063
BbsI	GAAGAC	1 cut(s)	115
BbvI	GCAGC	6 cut(s)	301, 677, 804, 1028, 1402, 1588
BccI	CCATC	9 cut(s)	314, 590, 596, 686, 1063, 1243, 1334, 1462, 1474
BceAI	ACGGC	3 cut(s)	171, 688, 958
BclI	TGATCA	1 cut(s)	427
BcnI	CCSGG	3 cut(s)	340, 953, 1526
BcoDI	GTCTC	5 cut(s)	400, 830, 941, 1163, 1190
BcuI	ACTAGT	1 cut(s)	839
BfaI	CTAG	3 cut(s)	311, 840, 894
BfmI	CTRYAG	2 cut(s)	64, 1410
BfrI	CTTAAG	1 cut(s)	923
BisI	GCNGC	6 cut(s)	315, 666, 793, 1042, 1416, 1577
BlsI	GCNGC	6 cut(s)	316, 667, 794, 1043, 1417, 1578
Bme1390I	CCNGG	3 cut(s)	340, 953, 1526
Bme18I	GGWCC	1 cut(s)	271
BmeRI	GACNNNNNGTC	1 cut(s)	457
BmeT110I	CYCGRG	1 cut(s)	403
BmgBI	CACGTC	2 cut(s)	1273, 1300
BmgT120I	GGNCC	2 cut(s)	271, 337
BmiI	GGNNCC	3 cut(s)	436, 567, 1452
BmrFI	CCNGG	3 cut(s)	340, 953, 1526
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	179, 652
BmuI	ACTGGG	1 cut(s)	174
BoxI	GACNNNNGTC	1 cut(s)	953
BpiI	GAAGAC	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	539
Bpu14I	TTCGAA	1 cut(s)	582
BpuEI	CTTGAG	2 cut(s)	655, 793
BpuMI	CCSGG	3 cut(s)	340, 953, 1526
BsaI	GGTCTC	2 cut(s)	941, 1190
BsaJI	CCNNGG	3 cut(s)	951, 960, 1257
BsaWI	WCCGGW	4 cut(s)	247, 803, 1148, 1447
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	7 cut(s)	165, 247, 334, 561, 729, 1112, 1381
Bse118I	RCCGGY	4 cut(s)	497, 795, 803, 1219
Bse1I	ACTGG	3 cut(s)	169, 468, 734
Bse21I	CCTNAGG	1 cut(s)	650
Bse3DI	GCAATG	1 cut(s)	76
BseAI	TCCGGA	3 cut(s)	247, 1148, 1447
BseDI	CCNNGG	3 cut(s)	951, 960, 1257
BseGI	GGATG	2 cut(s)	1074, 1178
BseLI	CCNNNNNNNGG	7 cut(s)	165, 247, 334, 561, 729, 1112, 1381
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	6 cut(s)	553, 561, 641, 1005, 1113, 1425
BseNI	ACTGG	3 cut(s)	169, 468, 734
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	6 cut(s)	301, 677, 804, 1028, 1402, 1588
Bsh1285I	CGRYCG	1 cut(s)	759
BshFI	GGCC	5 cut(s)	158, 338, 488, 733, 965
BshNI	GGYRCC	1 cut(s)	434
BshTI	ACCGGT	1 cut(s)	803
BsiEI	CGRYCG	1 cut(s)	759
BsiHKCI	CYCGRG	1 cut(s)	403
BslFI	GGGAC	4 cut(s)	181, 186, 395, 1310
BslI	CCNNNNNNNGG	7 cut(s)	165, 247, 334, 561, 729, 1112, 1381
BsmAI	GTCTC	5 cut(s)	400, 830, 941, 1163, 1190
BsmFI	GGGAC	4 cut(s)	181, 186, 395, 1310
BsmI	GAATGC	1 cut(s)	934
BsnI	GGCC	5 cut(s)	158, 338, 488, 733, 965
Bso31I	GGTCTC	2 cut(s)	941, 1190
BsoBI	CYCGRG	1 cut(s)	403
Bsp119I	TTCGAA	1 cut(s)	582
Bsp13I	TCCGGA	3 cut(s)	247, 1148, 1447
Bsp1407I	TGTACA	2 cut(s)	290, 1347
Bsp143I	GATC	7 cut(s)	418, 427, 444, 1151, 1450, 1505, 1582
Bsp19I	CCATGG	1 cut(s)	960
BspACI	CCGC	6 cut(s)	524, 1116, 1137, 1294, 1427, 1542
BspANI	GGCC	5 cut(s)	158, 338, 488, 733, 965
BspCNI	CTCAG	6 cut(s)	552, 562, 642, 1004, 1114, 1426
BspEI	TCCGGA	3 cut(s)	247, 1148, 1447
BspLI	GGNNCC	3 cut(s)	436, 567, 1452
BspPI	GGATC	4 cut(s)	1159, 1445, 1458, 1513
BspQI	GCTCTTC	1 cut(s)	873
BspT104I	TTCGAA	1 cut(s)	582
BspT107I	GGYRCC	1 cut(s)	434
BspTI	CTTAAG	1 cut(s)	923
BspTNI	GGTCTC	2 cut(s)	941, 1190
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	4 cut(s)	497, 795, 803, 1219
BsrGI	TGTACA	2 cut(s)	290, 1347
BsrI	ACTGG	3 cut(s)	169, 468, 734
BssAI	RCCGGY	4 cut(s)	497, 795, 803, 1219
BssECI	CCNNGG	3 cut(s)	951, 960, 1257
BssMI	GATC	7 cut(s)	418, 427, 444, 1151, 1450, 1505, 1582
BssSI	CACGAG	1 cut(s)	1063
BssT1I	CCWWGG	2 cut(s)	960, 1257
Bst2BI	CACGAG	1 cut(s)	1063
Bst6I	CTCTTC	1 cut(s)	873
BstAFI	CTTAAG	1 cut(s)	923
BstAUI	TGTACA	2 cut(s)	290, 1347
BstBI	TTCGAA	1 cut(s)	582
BstC8I	GCNNGC	5 cut(s)	499, 522, 797, 1057, 1221
BstDEI	CTNAG	6 cut(s)	539, 570, 650, 991, 1122, 1434
BstDSI	CCRYGG	1 cut(s)	960
BstEII	GGTNACC	3 cut(s)	955, 1384, 1528
BstF5I	GGATG	2 cut(s)	1074, 1178
BstKTI	GATC	7 cut(s)	421, 430, 447, 1154, 1453, 1508, 1585
BstMAI	GTCTC	5 cut(s)	400, 830, 941, 1163, 1190
BstMBI	GATC	7 cut(s)	418, 427, 444, 1151, 1450, 1505, 1582
BstMCI	CGRYCG	1 cut(s)	759
BstMWI	GCNNNNNNNGC	5 cut(s)	494, 880, 1300, 1435, 1585
BstNSI	RCATGY	4 cut(s)	416, 485, 524, 1048
BstPAI	GACNNNNGTC	1 cut(s)	953
BstPI	GGTNACC	3 cut(s)	955, 1384, 1528
BstSCI	CCNGG	3 cut(s)	338, 951, 1524
BstSFI	CTRYAG	2 cut(s)	64, 1410
BstV1I	GCAGC	6 cut(s)	301, 677, 804, 1028, 1402, 1588
BstV2I	GAAGAC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	1450
BstYI	RGATCY	1 cut(s)	1450
Bsu36I	CCTNAGG	1 cut(s)	650
BsuRI	GGCC	5 cut(s)	158, 338, 488, 733, 965
BtgI	CCRYGG	1 cut(s)	960
BtgZI	GCGATG	3 cut(s)	246, 615, 675
BtrI	CACGTC	2 cut(s)	1273, 1300
BtsCI	GGATG	2 cut(s)	1074, 1178
BtsI	GCAGTG	2 cut(s)	966, 1445
BtsIMutI	CAGTG	6 cut(s)	461, 966, 1002, 1128, 1221, 1445
Cac8I	GCNNGC	5 cut(s)	499, 522, 797, 1057, 1221
CaiI	CAGNNNCTG	1 cut(s)	1418
Cfr10I	RCCGGY	4 cut(s)	497, 795, 803, 1219
Cfr13I	GGNCC	2 cut(s)	271, 337
Csp6I	GTAC	7 cut(s)	179, 291, 435, 753, 843, 1119, 1348
CspAI	ACCGGT	1 cut(s)	803
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviQI	GTAC	7 cut(s)	179, 291, 435, 753, 843, 1119, 1348
DdeI	CTNAG	6 cut(s)	539, 570, 650, 991, 1122, 1434
DpnI	GATC	7 cut(s)	420, 429, 446, 1153, 1452, 1507, 1584
DpnII	GATC	7 cut(s)	418, 427, 444, 1151, 1450, 1505, 1582
DriI	GACNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	3 cut(s)	156, 731, 963
Eam1104I	CTCTTC	1 cut(s)	873
Eam1105I	GACNNNNNGTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	873
Eco130I	CCWWGG	2 cut(s)	960, 1257
Eco31I	GGTCTC	2 cut(s)	941, 1190
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	109, 246
Eco81I	CCTNAGG	1 cut(s)	650
Eco88I	CYCGRG	1 cut(s)	403
Eco91I	GGTNACC	3 cut(s)	955, 1384, 1528
EcoO65I	GGTNACC	3 cut(s)	955, 1384, 1528
EcoRI	GAATTC	1 cut(s)	1010
EcoT14I	CCWWGG	2 cut(s)	960, 1257
ErhI	CCWWGG	2 cut(s)	960, 1257
FaqI	GGGAC	4 cut(s)	181, 186, 395, 1310
FauI	CCCGC	1 cut(s)	1287
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	3 cut(s)	744, 996, 1092
Fnu4HI	GCNGC	6 cut(s)	315, 666, 793, 1042, 1416, 1577
FokI	GGATG	2 cut(s)	1081, 1165
Fsp4HI	GCNGC	6 cut(s)	315, 666, 793, 1042, 1416, 1577
FspBI	CTAG	3 cut(s)	311, 840, 894
GluI	GCNGC	6 cut(s)	315, 666, 793, 1042, 1416, 1577
HaeIII	GGCC	5 cut(s)	158, 338, 488, 733, 965
HincII	GTYRAC	2 cut(s)	745, 1093
HindII	GTYRAC	2 cut(s)	745, 1093
HinfI	GANTC	7 cut(s)	74, 80, 174, 458, 572, 1406, 1421
HphI	GGTGA	6 cut(s)	163, 478, 622, 949, 1416, 1540
Hpy188I	TCNGA	7 cut(s)	33, 79, 85, 423, 825, 1183, 1435
Hpy188III	TCNNGA	6 cut(s)	248, 403, 405, 569, 1149, 1448
Hpy99I	CGWCG	2 cut(s)	1094, 1274
HpyAV	CCTTC	6 cut(s)	221, 380, 499, 524, 600, 1440
HpyCH4IV	ACGT	3 cut(s)	828, 1272, 1299
HpyCH4V	TGCA	6 cut(s)	371, 665, 792, 971, 1044, 1519
HpyF10VI	GCNNNNNNNGC	5 cut(s)	494, 880, 1300, 1435, 1585
HpyF3I	CTNAG	6 cut(s)	539, 570, 650, 991, 1122, 1434
HpySE526I	ACGT	3 cut(s)	828, 1272, 1299
Kpn2I	TCCGGA	3 cut(s)	247, 1148, 1447
KpnI	GGTACC	1 cut(s)	438
KroI	GCCGGC	3 cut(s)	497, 795, 1219
KroNI	GCCGGC	3 cut(s)	499, 797, 1221
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	7 cut(s)	418, 427, 444, 1151, 1450, 1505, 1582
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	6 cut(s)	301, 677, 804, 1028, 1402, 1588
LweI	GCATC	2 cut(s)	179, 652
MaeI	CTAG	3 cut(s)	311, 840, 894
MaeII	ACGT	3 cut(s)	828, 1272, 1299
MalI	GATC	7 cut(s)	420, 429, 446, 1153, 1452, 1507, 1584
MboI	GATC	7 cut(s)	418, 427, 444, 1151, 1450, 1505, 1582
MboII	GAAGA	4 cut(s)	115, 890, 1453, 1579
MflI	RGATCY	1 cut(s)	1450
MlsI	TGGCCA	2 cut(s)	733, 965
MluCI	AATT	5 cut(s)	104, 785, 1010, 1173, 1360
MluNI	TGGCCA	2 cut(s)	733, 965
MlyI	GAGTC	3 cut(s)	168, 467, 581
Mox20I	TGGCCA	2 cut(s)	733, 965
MroI	TCCGGA	3 cut(s)	247, 1148, 1447
MroNI	GCCGGC	3 cut(s)	497, 795, 1219
MroXI	GAANNNNTTC	1 cut(s)	122
MscI	TGGCCA	2 cut(s)	733, 965
MseI	TTAA	2 cut(s)	924, 1359
MslI	CAYNNNNRTG	1 cut(s)	1159
Msp20I	TGGCCA	2 cut(s)	733, 965
MspA1I	CMGCKG	2 cut(s)	1294, 1415
MspCI	CTTAAG	1 cut(s)	923
MspR9I	CCNGG	3 cut(s)	340, 953, 1526
Mva1269I	GAATGC	1 cut(s)	934
MwoI	GCNNNNNNNGC	5 cut(s)	494, 880, 1300, 1435, 1585
NaeI	GCCGGC	3 cut(s)	499, 797, 1221
NciI	CCSGG	3 cut(s)	340, 953, 1526
NcoI	CCATGG	1 cut(s)	960
NdeII	GATC	7 cut(s)	418, 427, 444, 1151, 1450, 1505, 1582
NgoMIV	GCCGGC	3 cut(s)	497, 795, 1219
NlaIV	GGNNCC	3 cut(s)	436, 567, 1452
NmuCI	GTSAC	7 cut(s)	151, 194, 459, 861, 955, 1126, 1528
NspI	RCATGY	4 cut(s)	416, 485, 524, 1048
NspV	TTCGAA	1 cut(s)	582
PaeI	GCATGC	1 cut(s)	524
PaeR7I	CTCGAG	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	873
PcsI	WCGNNNNNNNCGW	2 cut(s)	678, 825
PctI	GAATGC	1 cut(s)	934
PdiI	GCCGGC	3 cut(s)	499, 797, 1221
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	4 cut(s)	74, 80, 1406, 1421
PinAI	ACCGGT	1 cut(s)	803
PkrI	GCNGC	6 cut(s)	316, 667, 794, 1043, 1417, 1578
PleI	GAGTC	3 cut(s)	168, 466, 580
PpsI	GAGTC	3 cut(s)	168, 466, 580
PshAI	GACNNNNGTC	1 cut(s)	953
PsiI	TTATAA	1 cut(s)	1308
PspEI	GGTNACC	3 cut(s)	955, 1384, 1528
PspN4I	GGNNCC	3 cut(s)	436, 567, 1452
PspPI	GGNCC	2 cut(s)	271, 337
PstNI	CAGNNNCTG	1 cut(s)	1418
PsuI	RGATCY	1 cut(s)	1450
PvuII	CAGCTG	1 cut(s)	1415
RsaI	GTAC	7 cut(s)	180, 292, 436, 754, 844, 1120, 1349
RsaNI	GTAC	7 cut(s)	179, 291, 435, 753, 843, 1119, 1348
RseI	CAYNNNNRTG	1 cut(s)	1159
SalI	GTCGAC	2 cut(s)	743, 1091
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	2 cut(s)	924, 1359
SatI	GCNGC	6 cut(s)	315, 666, 793, 1042, 1416, 1577
Sau3AI	GATC	7 cut(s)	418, 427, 444, 1151, 1450, 1505, 1582
Sau96I	GGNCC	2 cut(s)	271, 337
SchI	GAGTC	3 cut(s)	168, 467, 581
ScrFI	CCNGG	3 cut(s)	340, 953, 1526
SfaNI	GCATC	2 cut(s)	179, 652
SfcI	CTRYAG	2 cut(s)	64, 1410
Sfr274I	CTCGAG	1 cut(s)	403
SfuI	TTCGAA	1 cut(s)	582
SinI	GGWCC	1 cut(s)	271
SlaI	CTCGAG	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	1159
SmlI	CTYRAG	4 cut(s)	403, 634, 772, 923
SmoI	CTYRAG	4 cut(s)	403, 634, 772, 923
SpeI	ACTAGT	1 cut(s)	839
SphI	GCATGC	1 cut(s)	524
Sse9I	AATT	5 cut(s)	104, 785, 1010, 1173, 1360
SsiI	CCGC	6 cut(s)	524, 1116, 1137, 1294, 1427, 1542
SspI	AATATT	1 cut(s)	1145
SspMI	CTAG	3 cut(s)	311, 840, 894
StyD4I	CCNGG	3 cut(s)	338, 951, 1524
StyI	CCWWGG	2 cut(s)	960, 1257
TaiI	ACGT	3 cut(s)	831, 1275, 1302
TaqI	TCGA	7 cut(s)	307, 404, 582, 744, 918, 1092, 1581
TasI	AATT	5 cut(s)	104, 785, 1010, 1173, 1360
TatI	WGTACW	2 cut(s)	290, 1347
TfiI	GAWTC	4 cut(s)	74, 80, 1406, 1421
Tru1I	TTAA	2 cut(s)	924, 1359
Tru9I	TTAA	2 cut(s)	924, 1359
TscAI	CASTG	6 cut(s)	468, 973, 1009, 1135, 1221, 1445
TseFI	GTSAC	7 cut(s)	151, 194, 459, 861, 955, 1126, 1528
TseI	GCWGC	6 cut(s)	314, 665, 792, 1041, 1415, 1576
Tsp45I	GTSAC	7 cut(s)	151, 194, 459, 861, 955, 1126, 1528
TspDTI	ATGAA	4 cut(s)	535, 1099, 1353, 1580
TspGWI	ACGGA	4 cut(s)	126, 1043, 1095, 1364
TspRI	CASTG	6 cut(s)	468, 973, 1009, 1135, 1221, 1445
Vha464I	CTTAAG	1 cut(s)	923
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	3 cut(s)	104, 785, 1010
XceI	RCATGY	4 cut(s)	416, 485, 524, 1048
XhoI	CTCGAG	1 cut(s)	403
XmiI	GTMKAC	3 cut(s)	744, 996, 1092
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	3 cut(s)	311, 840, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.