Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000548

Physical Location & Seq

Genomic Coordinates Forward (+)

68308975 .. 68310591

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0556500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGTCGTTCCTATTACCACCCACTATTGCTCTCAGTTCAGTCTGGTTCTCCCAATTCAACAACTCCTACTTGATCTACAGGAATGATTCTGATTCCGAGACGCGTGGCTTTCTCAGAGTCAACGGATCGAATGTCTTCAGCCCATTAGCAAAGTTCGAAGTGGTGACGGCCAATACTGGGACGGGACTAGTACACATCAGATGCTCTCAGAACAGAAAGTTCCTGCGAAGGAAATTTGAGAGTGATGTGCACCTTACTCCGGAGGCTGATGAACCAGAGGAGGACCAATCCAAATGGTCGTGTACATTATTTGAGCCTCAAGTTGCTGAAGATGGCAACCCCGACAGAGTCCGGTTGTTCCATGTCCAATCAAAACAATATGCAACGGCATGGGACATAGGTGGAGCAGTAAGGGTCTTGAGATTAATTGAGAATCCGGTGCATCAGCATAACTTCGATATCATCGACTTGGAGTCATTGGTGATATTGCCAAGGCATGTGGCTTTCAAAGGCGACAACGGCAATTACCTTATGGCGGAAGCTACGACGACGTCGAACCCGACCTTCTCGTCCACCGACAAGGGCAGGCCTGAGTCGTGGTTCGAGGTCTCCACGGATGGCCATGGTAGGGTGCAAATCAAGTCGTTCGACACCAACAGGTACCTGAGGAACGACGCTGGCCTCAACTGGATTTTGGCTGACTCAGCCGGCAACGCCACCGACCTGACCACCTTGTTTTGGCCAGTCAAGGTCGACACTAGGACGGTCGCTCTCAAAAGCTTGAGCAACGACAGATTTTGCTCCCGATACACCGACCTTGGTGTAACAAACGGTCTAAACGCAAGGCTGACCAGTATTACAGTACACTCACGCATGGCGCTGGAAGAGCTTGTTCTCTCTCGGACAATCTACAATACCGAATTTGACCTCGCCAATGTCATAATCTATGGCGAGACCCCGGTCACTATGGCCACTGCAAACGCCAGCAACAACACCTCAGCAGACAACACTGTGGAATTCAAGTTCGCGTACACGGAGAGTAAGAGCAGCACATGGAACTCCAGCCACTCGTGGATGGTGGGCGTGAGTGTCACCGCCAGCTTAAGCATTCCATTCGGGCTCGGTGGTATTGAAACTACATATTCCGGGGAGTATAACGGATCCTACGAATGGGGAGAAACAATTACAACCGAAAACACATTGGAGACTACTTACACCGCCACTGTGCCGGCAAACACTTCTATATCTGTGAGCTTGATGGCAACCAAGGGATATTCCGACGTGCCTTACTCTTATTATCAGCGAGACGTGCTTTATAACGGTAAAACCGTTGTCTATAAGAAGGATGATGGGCTGTACACGGGAATAAATTCATACAACTTCCACTACGTGGTTACAACTCTGAGACAGCCAGAATCTAGAGCTGATTTGTCGACCAGAGAGCAGAAGTTGCCGGACCCAGCCGTCGACCCGTCCAAACAAGAAATTGTACCTATGCCTGTGCCATCTGGATCAACCACCAGAGTGCAAAACGTGACCTCGACCACCACCCCGGACCAAGAGTTGTCAAAGCTGGGATTAGAAGATGCAACAGCTCGATCTGCCATAAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

538

Amino Acids

59.84

Weight (kDa)

5.28

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agglutinin	PF07468	14 - 141	4e-19	Agglutinin domain
Aerolysin	PF01117	306 - 432	1.5e-06	Aerolysin toxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca	FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica	MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica	Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis	pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis	RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata	RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora	Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii	Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa	Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha	Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana	Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1317
AasI	GACNNNNNNGTC	2 cut(s)	568, 1463
AatII	GACGTC	1 cut(s)	554
Acc65I	GGTACC	1 cut(s)	660
AccB1I	GGYRCC	1 cut(s)	660
AccB7I	CCANNNNNTGG	1 cut(s)	1390
AccI	GTMKAC	3 cut(s)	753, 1433, 1467
AccII	CGCG	2 cut(s)	103, 1028
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	3 cut(s)	536, 1095, 1218
AclWI	GGATC	4 cut(s)	133, 1155, 1168, 1519
AcoI	YGGCCR	4 cut(s)	168, 619, 740, 969
AcsI	RAATTY	4 cut(s)	233, 920, 1016, 1369
AcuI	CTGAAG	2 cut(s)	121, 348
AcyI	GRCGYC	1 cut(s)	551
AdeI	CACNNNGTG	1 cut(s)	1390
AfaI	GTAC	7 cut(s)	192, 304, 662, 864, 1031, 1358, 1491
AfiI	CCNNNNNNNGG	7 cut(s)	177, 259, 535, 628, 738, 1170, 1390
AflII	CTTAAG	1 cut(s)	1102
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	58, 508, 1021, 1133
AhdI	GACNNNNNGTC	1 cut(s)	472
AhlI	ACTAGT	1 cut(s)	187
AjiI	CACGTC	2 cut(s)	1282, 1309
AleI	CACNNNNGTG	1 cut(s)	1523
AloI	GAACNNNNNNTCC	2 cut(s)	1007, 1039
AluBI	AGCT	8 cut(s)	542, 780, 889, 1101, 1254, 1424, 1573, 1595
AluI	AGCT	8 cut(s)	542, 780, 889, 1101, 1254, 1424, 1573, 1595
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	6 cut(s)	92, 613, 947, 1199, 1299, 1399
Alw44I	GTGCAC	1 cut(s)	248
AlwI	GGATC	4 cut(s)	133, 1155, 1168, 1519
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	6 cut(s)	168, 587, 619, 679, 740, 969
ApaLI	GTGCAC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	1047
ApoI	RAATTY	4 cut(s)	233, 920, 1016, 1369
AseI	ATTAAT	1 cut(s)	425
Asp700I	GAANNNNTTC	2 cut(s)	134, 1369
Asp718I	GGTACC	1 cut(s)	660
AspLEI	GCGC	1 cut(s)	880
AspS9I	GGNCC	3 cut(s)	283, 1456, 1555
AsuC2I	CCSGG	3 cut(s)	959, 1147, 1553
AsuHPI	GGTGA	3 cut(s)	175, 493, 1084
AsuII	TTCGAA	1 cut(s)	156
AvaII	GGWCC	3 cut(s)	283, 1456, 1555
AxyI	CCTNAGG	1 cut(s)	665
BaeGI	GKGCMC	1 cut(s)	252
BalI	TGGCCA	3 cut(s)	621, 742, 971
BamHI	GGATCC	1 cut(s)	1160
BanI	GGYRCC	1 cut(s)	660
BanII	GRGCYC	1 cut(s)	1122
BauI	CACGAG	1 cut(s)	1069
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	997
BbvI	GCAGC	1 cut(s)	1059
BccI	CCATC	6 cut(s)	326, 611, 1069, 1252, 1343, 1513
BceAI	ACGGC	4 cut(s)	183, 402, 535, 1448
BcgI	CGANNNNNNTGC	2 cut(s)	1096, 1130
BcnI	CCSGG	3 cut(s)	959, 1147, 1553
BcoDI	GTCTC	6 cut(s)	92, 613, 947, 1199, 1299, 1399
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	4 cut(s)	188, 759, 1419, 1615
BfmI	CTRYAG	1 cut(s)	76
BfoI	RGCGCY	1 cut(s)	881
BfrI	CTTAAG	1 cut(s)	1102
BisI	GCNGC	1 cut(s)	1048
BlsI	GCNGC	1 cut(s)	1049
Bme1390I	CCNGG	3 cut(s)	959, 1147, 1553
Bme18I	GGWCC	3 cut(s)	283, 1456, 1555
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmgBI	CACGTC	2 cut(s)	1282, 1309
BmgT120I	GGNCC	3 cut(s)	283, 1456, 1555
BmiI	GGNNCC	3 cut(s)	662, 1162, 1458
BmrFI	CCNGG	3 cut(s)	959, 1147, 1553
BmrI	ACTGGG	1 cut(s)	186
BmsI	GCATC	3 cut(s)	191, 451, 1576
BmuI	ACTGGG	1 cut(s)	186
BoxI	GACNNNNGTC	1 cut(s)	959
BpiI	GAAGAC	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	1045
Bpu10I	CCTNAGC	1 cut(s)	997
Bpu14I	TTCGAA	1 cut(s)	156
BpuEI	CTTGAG	3 cut(s)	303, 439, 802
BpuMI	CCSGG	3 cut(s)	959, 1147, 1553
BsaAI	YACGTR	1 cut(s)	1390
BsaHI	GRCGYC	1 cut(s)	551
BsaI	GGTCTC	2 cut(s)	613, 947
BsaJI	CCNNGG	8 cut(s)	491, 612, 622, 817, 957, 1146, 1266, 1551
BsaWI	WCCGGW	3 cut(s)	259, 351, 436
Bsc4I	CCNNNNNNNGG	7 cut(s)	177, 259, 535, 628, 738, 1170, 1390
Bse118I	RCCGGY	2 cut(s)	707, 1228
Bse1I	ACTGG	4 cut(s)	181, 692, 743, 852
Bse21I	CCTNAGG	1 cut(s)	665
BseAI	TCCGGA	1 cut(s)	259
BseDI	CCNNGG	8 cut(s)	491, 612, 622, 817, 957, 1146, 1266, 1551
BseGI	GGATG	3 cut(s)	622, 1080, 1351
BseLI	CCNNNNNNNGG	7 cut(s)	177, 259, 535, 628, 738, 1170, 1390
BseMII	CTCAG	8 cut(s)	46, 127, 221, 582, 656, 717, 1011, 1394
BseNI	ACTGG	4 cut(s)	181, 692, 743, 852
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	1059
BseYI	CCCAGC	2 cut(s)	1459, 1573
Bsh1236I	CGCG	2 cut(s)	103, 1028
Bsh1285I	CGRYCG	1 cut(s)	768
BshFI	GGCC	6 cut(s)	170, 589, 621, 681, 742, 971
BshNI	GGYRCC	1 cut(s)	660
BsiEI	CGRYCG	1 cut(s)	768
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	9 cut(s)	260, 352, 437, 708, 959, 1146, 1229, 1454, 1553
BslFI	GGGAC	3 cut(s)	193, 198, 407
BslI	CCNNNNNNNGG	7 cut(s)	177, 259, 535, 628, 738, 1170, 1390
BsmAI	GTCTC	6 cut(s)	92, 613, 947, 1199, 1299, 1399
BsmBI	CGTCTC	2 cut(s)	92, 1299
BsmFI	GGGAC	3 cut(s)	193, 198, 407
BsmI	GAATGC	1 cut(s)	1107
BsnI	GGCC	6 cut(s)	170, 589, 621, 681, 742, 971
Bso31I	GGTCTC	2 cut(s)	613, 947
Bsp119I	TTCGAA	1 cut(s)	156
Bsp1286I	GDGCHC	2 cut(s)	252, 1122
Bsp13I	TCCGGA	1 cut(s)	259
Bsp1407I	TGTACA	2 cut(s)	302, 1356
Bsp143I	GATC	5 cut(s)	72, 125, 1160, 1511, 1598
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	3 cut(s)	536, 1095, 1218
BspANI	GGCC	6 cut(s)	170, 589, 621, 681, 742, 971
BspCNI	CTCAG	8 cut(s)	45, 126, 220, 583, 657, 716, 1010, 1395
BspEI	TCCGGA	1 cut(s)	259
BspFNI	CGCG	2 cut(s)	103, 1028
BspLI	GGNNCC	3 cut(s)	662, 1162, 1458
BspPI	GGATC	4 cut(s)	133, 1155, 1168, 1519
BspQI	GCTCTTC	1 cut(s)	879
BspT104I	TTCGAA	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	660
BspTI	CTTAAG	1 cut(s)	1102
BspTNI	GGTCTC	2 cut(s)	613, 947
BsrFI	RCCGGY	2 cut(s)	707, 1228
BsrGI	TGTACA	2 cut(s)	302, 1356
BsrI	ACTGG	4 cut(s)	181, 692, 743, 852
BssAI	RCCGGY	2 cut(s)	707, 1228
BssECI	CCNNGG	8 cut(s)	491, 612, 622, 817, 957, 1146, 1266, 1551
BssMI	GATC	5 cut(s)	72, 125, 1160, 1511, 1598
BssNI	GRCGYC	1 cut(s)	551
BssSI	CACGAG	1 cut(s)	1069
BssT1I	CCWWGG	4 cut(s)	491, 622, 817, 1266
Bst2BI	CACGAG	1 cut(s)	1069
Bst4CI	ACNGT	7 cut(s)	766, 833, 862, 1012, 1225, 1322, 1330
Bst6I	CTCTTC	1 cut(s)	879
BstACI	GRCGYC	1 cut(s)	551
BstAFI	CTTAAG	1 cut(s)	1102
BstAPI	GCANNNNNTGC	1 cut(s)	1450
BstAUI	TGTACA	2 cut(s)	302, 1356
BstBAI	YACGTR	1 cut(s)	1390
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	6 cut(s)	587, 679, 709, 985, 1099, 1230
BstDEI	CTNAG	8 cut(s)	32, 113, 207, 591, 665, 703, 997, 1403
BstDSI	CCRYGG	2 cut(s)	612, 622
BstF5I	GGATG	3 cut(s)	622, 1080, 1351
BstFNI	CGCG	2 cut(s)	103, 1028
BstH2I	RGCGCY	1 cut(s)	881
BstHHI	GCGC	1 cut(s)	880
BstKTI	GATC	5 cut(s)	75, 128, 1163, 1514, 1601
BstMAI	GTCTC	6 cut(s)	92, 613, 947, 1199, 1299, 1399
BstMBI	GATC	5 cut(s)	72, 125, 1160, 1511, 1598
BstMCI	CGRYCG	1 cut(s)	768
BstMWI	GCNNNNNNNGC	7 cut(s)	519, 704, 713, 886, 1309, 1450, 1601
BstNSI	RCATGY	1 cut(s)	500
BstPAI	GACNNNNGTC	1 cut(s)	959
BstSCI	CCNGG	3 cut(s)	957, 1145, 1551
BstSFI	CTRYAG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	252
BstUI	CGCG	2 cut(s)	103, 1028
BstV1I	GCAGC	1 cut(s)	1059
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	1160
BstYI	RGATCY	1 cut(s)	1160
Bsu36I	CCTNAGG	1 cut(s)	665
BsuRI	GGCC	6 cut(s)	170, 589, 621, 681, 742, 971
BtgI	CCRYGG	2 cut(s)	612, 622
BtrI	CACGTC	2 cut(s)	1282, 1309
BtsCI	GGATG	3 cut(s)	622, 1080, 1351
BtsI	GCAGTG	1 cut(s)	972
BtsIMutI	CAGTG	3 cut(s)	972, 1008, 1221
Cac8I	GCNNGC	6 cut(s)	587, 679, 709, 985, 1099, 1230
CfoI	GCGC	1 cut(s)	880
Cfr10I	RCCGGY	2 cut(s)	707, 1228
Cfr13I	GGNCC	3 cut(s)	283, 1456, 1555
CseI	GACGC	2 cut(s)	109, 683
Csp6I	GTAC	7 cut(s)	191, 303, 661, 863, 1030, 1357, 1490
CspCI	CAANNNNNGTGG	2 cut(s)	480, 515
CviAII	CATG	6 cut(s)	362, 390, 497, 623, 874, 1053
CviQI	GTAC	7 cut(s)	191, 303, 661, 863, 1030, 1357, 1490
DdeI	CTNAG	8 cut(s)	32, 113, 207, 591, 665, 703, 997, 1403
DpnI	GATC	5 cut(s)	74, 127, 1162, 1513, 1600
DpnII	GATC	5 cut(s)	72, 125, 1160, 1511, 1598
DraIII	CACNNNGTG	1 cut(s)	1390
DrdI	GACNNNNNNGTC	2 cut(s)	568, 1463
DriI	GACNNNNNGTC	1 cut(s)	472
DseDI	GACNNNNNNGTC	2 cut(s)	568, 1463
EaeI	YGGCCR	4 cut(s)	168, 619, 740, 969
Eam1104I	CTCTTC	1 cut(s)	879
Eam1105I	GACNNNNNGTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	879
EciI	GGCGGA	1 cut(s)	551
Eco130I	CCWWGG	4 cut(s)	491, 622, 817, 1266
Eco147I	AGGCCT	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	1122
Eco31I	GGTCTC	2 cut(s)	613, 947
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	3 cut(s)	283, 1456, 1555
Eco57I	CTGAAG	2 cut(s)	121, 348
Eco81I	CCTNAGG	1 cut(s)	665
EcoRI	GAATTC	1 cut(s)	1016
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	4 cut(s)	491, 622, 817, 1266
EcoT38I	GRGCYC	1 cut(s)	1122
ErhI	CCWWGG	4 cut(s)	491, 622, 817, 1266
Esp3I	CGTCTC	2 cut(s)	92, 1299
FaeI	CATG	6 cut(s)	365, 393, 500, 626, 877, 1056
FaqI	GGGAC	3 cut(s)	193, 198, 407
FatI	CATG	6 cut(s)	361, 389, 496, 622, 873, 1052
FblI	GTMKAC	3 cut(s)	753, 1433, 1467
Fnu4HI	GCNGC	1 cut(s)	1048
FokI	GGATG	3 cut(s)	629, 1087, 1358
FriOI	GRGCYC	1 cut(s)	1122
Fsp4HI	GCNGC	1 cut(s)	1048
FspBI	CTAG	4 cut(s)	188, 759, 1419, 1615
GlaI	GCGC	1 cut(s)	879
GluI	GCNGC	1 cut(s)	1048
GsaI	CCCAGC	2 cut(s)	1463, 1577
GsuI	CTGGAG	1 cut(s)	1045
HaeII	RGCGCY	1 cut(s)	881
HaeIII	GGCC	6 cut(s)	170, 589, 621, 681, 742, 971
HapII	CCGG	9 cut(s)	260, 352, 437, 708, 959, 1146, 1229, 1454, 1553
HgaI	GACGC	2 cut(s)	109, 683
HhaI	GCGC	1 cut(s)	880
Hin1I	GRCGYC	1 cut(s)	551
Hin1II	CATG	6 cut(s)	365, 393, 500, 626, 877, 1056
Hin6I	GCGC	1 cut(s)	878
HinP1I	GCGC	1 cut(s)	878
HincII	GTYRAC	4 cut(s)	121, 754, 1434, 1468
HindII	GTYRAC	4 cut(s)	121, 754, 1434, 1468
HindIII	AAGCTT	1 cut(s)	778
HinfI	GANTC	9 cut(s)	86, 92, 117, 348, 433, 473, 593, 701, 1415
HpaII	CCGG	9 cut(s)	260, 352, 437, 708, 959, 1146, 1229, 1454, 1553
HphI	GGTGA	3 cut(s)	175, 493, 1084
Hpy188I	TCNGA	8 cut(s)	91, 97, 116, 200, 210, 903, 1279, 1404
Hpy188III	TCNNGA	5 cut(s)	260, 418, 804, 1419, 1509
Hpy99I	CGWCG	6 cut(s)	550, 553, 556, 677, 1283, 1469
HpyAV	CCTTC	3 cut(s)	222, 574, 1336
HpyCH4III	ACNGT	7 cut(s)	766, 833, 862, 1012, 1225, 1322, 1330
HpyCH4IV	ACGT	5 cut(s)	551, 1281, 1308, 1389, 1533
HpyCH4V	TGCA	7 cut(s)	250, 383, 442, 634, 977, 1528, 1589
HpyF10VI	GCNNNNNNNGC	7 cut(s)	519, 704, 713, 886, 1309, 1450, 1601
HpyF3I	CTNAG	8 cut(s)	32, 113, 207, 591, 665, 703, 997, 1403
HpySE526I	ACGT	5 cut(s)	551, 1281, 1308, 1389, 1533
Hsp92I	GRCGYC	1 cut(s)	551
Hsp92II	CATG	6 cut(s)	365, 393, 500, 626, 877, 1056
HspAI	GCGC	1 cut(s)	878
Kpn2I	TCCGGA	1 cut(s)	259
KpnI	GGTACC	1 cut(s)	664
KroI	GCCGGC	2 cut(s)	707, 1228
KroNI	GCCGGC	2 cut(s)	709, 1230
Kzo9I	GATC	5 cut(s)	72, 125, 1160, 1511, 1598
LguI	GCTCTTC	1 cut(s)	879
LmnI	GCTCC	2 cut(s)	404, 806
Lsp1109I	GCAGC	1 cut(s)	1059
LweI	GCATC	3 cut(s)	191, 451, 1576
MaeI	CTAG	4 cut(s)	188, 759, 1419, 1615
MaeII	ACGT	5 cut(s)	551, 1281, 1308, 1389, 1533
MaeIII	GTNAC	6 cut(s)	163, 823, 961, 1090, 1393, 1534
MalI	GATC	5 cut(s)	74, 127, 1162, 1513, 1600
MboI	GATC	5 cut(s)	72, 125, 1160, 1511, 1598
MboII	GAAGA	4 cut(s)	127, 341, 896, 1595
MflI	RGATCY	1 cut(s)	1160
MhlI	GDGCHC	2 cut(s)	252, 1122
MlsI	TGGCCA	3 cut(s)	621, 742, 971
MluCI	AATT	9 cut(s)	53, 233, 426, 523, 920, 1016, 1182, 1369, 1485
MluI	ACGCGT	1 cut(s)	101
MluNI	TGGCCA	3 cut(s)	621, 742, 971
MlyI	GAGTC	5 cut(s)	126, 357, 482, 602, 695
MmeI	TCCRAC	1 cut(s)	1302
Mox20I	TGGCCA	3 cut(s)	621, 742, 971
MroI	TCCGGA	1 cut(s)	259
MroNI	GCCGGC	2 cut(s)	707, 1228
MroXI	GAANNNNTTC	2 cut(s)	134, 1369
MscI	TGGCCA	3 cut(s)	621, 742, 971
MseI	TTAA	2 cut(s)	425, 1103
MslI	CAYNNNNRTG	1 cut(s)	1523
Msp20I	TGGCCA	3 cut(s)	621, 742, 971
MspCI	CTTAAG	1 cut(s)	1102
MspI	CCGG	9 cut(s)	260, 352, 437, 708, 959, 1146, 1229, 1454, 1553
MspR9I	CCNGG	3 cut(s)	959, 1147, 1553
Mva1269I	GAATGC	1 cut(s)	1107
MvnI	CGCG	2 cut(s)	103, 1028
MwoI	GCNNNNNNNGC	7 cut(s)	519, 704, 713, 886, 1309, 1450, 1601
NaeI	GCCGGC	2 cut(s)	709, 1230
NciI	CCSGG	3 cut(s)	959, 1147, 1553
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	5 cut(s)	72, 125, 1160, 1511, 1598
NgoMIV	GCCGGC	2 cut(s)	707, 1228
NlaIII	CATG	6 cut(s)	365, 393, 500, 626, 877, 1056
NlaIV	GGNNCC	3 cut(s)	662, 1162, 1458
NmuCI	GTSAC	4 cut(s)	163, 961, 1090, 1534
NspI	RCATGY	1 cut(s)	500
NspV	TTCGAA	1 cut(s)	156
OliI	CACNNNNGTG	1 cut(s)	1523
PceI	AGGCCT	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	879
PcsI	WCGNNNNNNNCGW	5 cut(s)	462, 551, 557, 1164, 1326
PctI	GAATGC	1 cut(s)	1107
PdiI	GCCGGC	2 cut(s)	709, 1230
PdmI	GAANNNNTTC	2 cut(s)	134, 1369
PfeI	GAWTC	4 cut(s)	86, 92, 433, 1415
PflFI	GACNNNGTC	2 cut(s)	347, 550
PflMI	CCANNNNNTGG	1 cut(s)	1390
PkrI	GCNGC	1 cut(s)	1049
PleI	GAGTC	5 cut(s)	125, 356, 481, 601, 695
PpsI	GAGTC	5 cut(s)	125, 356, 481, 601, 695
Ppu21I	YACGTR	1 cut(s)	1390
PshAI	GACNNNNGTC	1 cut(s)	959
PshBI	ATTAAT	1 cut(s)	425
PsiI	TTATAA	1 cut(s)	1317
PspFI	CCCAGC	2 cut(s)	1459, 1573
PspN4I	GGNNCC	3 cut(s)	662, 1162, 1458
PspPI	GGNCC	3 cut(s)	283, 1456, 1555
PsuI	RGATCY	1 cut(s)	1160
PsyI	GACNNNGTC	2 cut(s)	347, 550
RsaI	GTAC	7 cut(s)	192, 304, 662, 864, 1031, 1358, 1491
RsaNI	GTAC	7 cut(s)	191, 303, 661, 863, 1030, 1357, 1490
RseI	CAYNNNNRTG	1 cut(s)	1523
SalI	GTCGAC	3 cut(s)	752, 1432, 1466
SapI	GCTCTTC	1 cut(s)	879
SaqAI	TTAA	2 cut(s)	425, 1103
SatI	GCNGC	1 cut(s)	1048
Sau3AI	GATC	5 cut(s)	72, 125, 1160, 1511, 1598
Sau96I	GGNCC	3 cut(s)	283, 1456, 1555
SchI	GAGTC	5 cut(s)	126, 357, 482, 602, 695
ScrFI	CCNGG	3 cut(s)	959, 1147, 1553
SduI	GDGCHC	2 cut(s)	252, 1122
SfaNI	GCATC	3 cut(s)	191, 451, 1576
SfcI	CTRYAG	1 cut(s)	76
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	3 cut(s)	283, 1456, 1555
SmiMI	CAYNNNNRTG	1 cut(s)	1523
SmlI	CTYRAG	4 cut(s)	318, 418, 781, 1102
SmoI	CTYRAG	4 cut(s)	318, 418, 781, 1102
SpeI	ACTAGT	1 cut(s)	187
Sse9I	AATT	9 cut(s)	53, 233, 426, 523, 920, 1016, 1182, 1369, 1485
SseBI	AGGCCT	1 cut(s)	589
SsiI	CCGC	3 cut(s)	536, 1095, 1218
SspMI	CTAG	4 cut(s)	188, 759, 1419, 1615
StuI	AGGCCT	1 cut(s)	589
StyD4I	CCNGG	3 cut(s)	957, 1145, 1551
StyI	CCWWGG	4 cut(s)	491, 622, 817, 1266
TaaI	ACNGT	7 cut(s)	766, 833, 862, 1012, 1225, 1322, 1330
TaiI	ACGT	5 cut(s)	554, 1284, 1311, 1392, 1536
TasI	AATT	9 cut(s)	53, 233, 426, 523, 920, 1016, 1182, 1369, 1485
TatI	WGTACW	4 cut(s)	190, 302, 862, 1356
TfiI	GAWTC	4 cut(s)	86, 92, 433, 1415
Tru1I	TTAA	2 cut(s)	425, 1103
Tru9I	TTAA	2 cut(s)	425, 1103
TscAI	CASTG	3 cut(s)	979, 1015, 1228
TseFI	GTSAC	4 cut(s)	163, 961, 1090, 1534
TseI	GCWGC	1 cut(s)	1047
Tsp45I	GTSAC	4 cut(s)	163, 961, 1090, 1534
TspDTI	ATGAA	2 cut(s)	285, 1362
TspGWI	ACGGA	4 cut(s)	138, 629, 1049, 1173
TspRI	CASTG	3 cut(s)	979, 1015, 1228
Tth111I	GACNNNGTC	2 cut(s)	347, 550
Van91I	CCANNNNNTGG	1 cut(s)	1390
Vha464I	CTTAAG	1 cut(s)	1102
VneI	GTGCAC	1 cut(s)	248
VpaK11BI	GGWCC	3 cut(s)	283, 1456, 1555
VspI	ATTAAT	1 cut(s)	425
XapI	RAATTY	4 cut(s)	233, 920, 1016, 1369
XbaI	TCTAGA	1 cut(s)	1418
XceI	RCATGY	1 cut(s)	500
XmiI	GTMKAC	3 cut(s)	753, 1433, 1467
XmnI	GAANNNNTTC	2 cut(s)	134, 1369
XspI	CTAG	4 cut(s)	188, 759, 1419, 1615
ZraI	GACGTC	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.