RchiOBHm_Chr5g0063841

Reversible hydration of carbon dioxide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000548
Physical Location & Seq
Reverse (-)
69627561 .. 69628880
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33991

Sequence Viewer

Length: 621 bp
ATGGCTTCAAGCACTTCAAGACCAGCTACTTCGACACAAATCCAGCTTTGTTTGATGAGCTTGCCCAAGGACAAAGCCCCGAGGCACTTTATGGTATTTGCATGCTCGGATTCTCGAGTGTGTCCTTCACATGTTCTTCACTTCCAACCTGGGGAGGCCTTCATCGTTCGCAACATTGCTAACATGGTTCCTGCTTTTGATCAGCTAAAACATGCAGGAGTTGGAGCAACCATAGAATATGCTGTCAAAGAACTCGGGGTGGCAAATATTTTGGTAATGGGACACAGTAATTGTGGTGGAATAAAGAGGCTAATGTCTTATCCGGAGGATGGCTCTGAGCCCTTCGACTTTATAGATGAATGGGTGAAAATGAGTTTACCAGCCAAGGCTGAGGTTATTGCAGAAGCTGGGAGTGCAGATTTCCATGAACAATGTGAAAGATGTGCAAGGGAATCAGTAAACTTGTCACTGGCAAACCTACTTACCTACCCCTTTGTTCAAAAGGCACACTTGGATGAAAAACTAGCACTTCGGGGTGGATACTATGACTTTGTCAATGGAATTTTCGAGCTATGGGAGCTCAAATCCCACATTTCAAACCTCATCATCGTACAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Pro_CA

Protein Analysis

206

Amino Acids

22.79

Weight (kDa)

5.88

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_CA PF00484 31 - 187 4.9e-42 Carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 322
AcsI RAATTY 1 cut(s) 561
AfaI GTAC 1 cut(s) 612
AfiI CCNNNNNNNGG 2 cut(s) 151, 329
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 4 cut(s) 9, 18, 500, 597
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 7 cut(s) 26, 46, 60, 205, 407, 571, 580
AluI AGCT 7 cut(s) 26, 46, 60, 205, 407, 571, 580
Alw21I GWGCWC 1 cut(s) 582
AlwNI CAGNNNCTG 1 cut(s) 407
Ama87I CYCGRG 3 cut(s) 79, 114, 254
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 561
AsuHPI GGTGA 1 cut(s) 376
AvaI CYCGRG 3 cut(s) 79, 114, 254
BanII GRGCYC 2 cut(s) 342, 582
Bbv12I GWGCWC 1 cut(s) 582
BbvCI CCTCAGC 1 cut(s) 390
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 150
BciVI GTATCC 1 cut(s) 533
BclI TGATCA 1 cut(s) 199
BfaI CTAG 1 cut(s) 524
BfuI GTATCC 1 cut(s) 533
Bme1390I CCNGG 1 cut(s) 150
BmeT110I CYCGRG 3 cut(s) 79, 114, 254
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 317, 349
Bpu10I CCTNAGC 1 cut(s) 390
BsaJI CCNNGG 4 cut(s) 66, 80, 149, 384
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 329
Bse1I ACTGG 1 cut(s) 474
Bse3DI GCAATG 1 cut(s) 174
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 4 cut(s) 66, 80, 149, 384
BseGI GGATG 2 cut(s) 334, 520
BseLI CCNNNNNNNGG 2 cut(s) 151, 329
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 327, 381
BseNI ACTGG 1 cut(s) 474
BseYI CCCAGC 1 cut(s) 407
BsgI GTGCAG 1 cut(s) 435
BshFI GGCC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 582
BsiHKCI CYCGRG 3 cut(s) 79, 114, 254
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 2 cut(s) 151, 329
BsmFI GGGAC 1 cut(s) 294
BsnI GGCC 1 cut(s) 158
BsoBI CYCGRG 3 cut(s) 79, 114, 254
Bsp1286I GDGCHC 2 cut(s) 342, 582
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 1 cut(s) 199
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 2 cut(s) 328, 382
BspEI TCCGGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 1 cut(s) 474
BssECI CCNNGG 4 cut(s) 66, 80, 149, 384
BssMI GATC 1 cut(s) 199
BssT1I CCWWGG 2 cut(s) 66, 384
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 62, 103
BstDEI CTNAG 2 cut(s) 336, 390
BstF5I GGATG 2 cut(s) 334, 520
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 2 cut(s) 413, 577
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 3 cut(s) 105, 134, 215
BstSCI CCNGG 1 cut(s) 148
BsuI GTATCC 1 cut(s) 533
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 2 cut(s) 334, 520
BtsIMutI CAGTG 1 cut(s) 467
Cac8I GCNNGC 2 cut(s) 62, 103
CaiI CAGNNNCTG 1 cut(s) 407
Csp6I GTAC 1 cut(s) 611
CviAII CATG 5 cut(s) 102, 131, 184, 212, 425
CviQI GTAC 1 cut(s) 611
DdeI CTNAG 2 cut(s) 336, 390
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 2 cut(s) 66, 384
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 2 cut(s) 342, 582
Eco53kI GAGCTC 1 cut(s) 580
Eco88I CYCGRG 3 cut(s) 79, 114, 254
EcoICRI GAGCTC 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 148
EcoT14I CCWWGG 2 cut(s) 66, 384
EcoT38I GRGCYC 2 cut(s) 342, 582
ErhI CCWWGG 2 cut(s) 66, 384
FaeI CATG 5 cut(s) 105, 134, 187, 215, 428
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 1 cut(s) 294
FatI CATG 5 cut(s) 101, 130, 183, 211, 424
FbaI TGATCA 1 cut(s) 199
FokI GGATG 2 cut(s) 341, 527
FriOI GRGCYC 2 cut(s) 342, 582
FspBI CTAG 1 cut(s) 524
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 323
Hin1II CATG 5 cut(s) 105, 134, 187, 215, 428
HinfI GANTC 2 cut(s) 110, 452
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 2 cut(s) 377, 460
Hpy188I TCNGA 2 cut(s) 109, 337
Hpy188III TCNNGA 4 cut(s) 18, 114, 323, 618
Hpy8I GTNNAC 2 cut(s) 377, 460
HpyAV CCTTC 3 cut(s) 135, 169, 352
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4V TGCA 5 cut(s) 101, 215, 401, 416, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 577
HpyF3I CTNAG 2 cut(s) 336, 390
Hsp92II CATG 5 cut(s) 105, 134, 187, 215, 428
Kpn2I TCCGGA 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 2 cut(s) 224, 577
MaeI CTAG 1 cut(s) 524
MaeIII GTNAC 1 cut(s) 465
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 342, 582
MluCI AATT 2 cut(s) 289, 561
MmeI TCCRAC 2 cut(s) 169, 202
MnlI CCTC 6 cut(s) 75, 148, 300, 319, 385, 611
MroI TCCGGA 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 513
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 413, 577
NdeII GATC 1 cut(s) 199
NlaIII CATG 5 cut(s) 105, 134, 187, 215, 428
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 465
NspI RCATGY 3 cut(s) 105, 134, 215
PaeI GCATGC 1 cut(s) 105
PaeR7I CTCGAG 1 cut(s) 114
PceI AGGCCT 1 cut(s) 158
PciI ACATGT 1 cut(s) 130
PfeI GAWTC 2 cut(s) 110, 452
PflFI GACNNNGTC 1 cut(s) 551
PscI ACATGT 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 148
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 407
PsyI GACNNNGTC 1 cut(s) 551
RsaI GTAC 1 cut(s) 612
RsaNI GTAC 1 cut(s) 611
RseI CAYNNNNRTG 1 cut(s) 513
SacI GAGCTC 1 cut(s) 582
Sau3AI GATC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 2 cut(s) 342, 582
Sfr274I CTCGAG 1 cut(s) 114
SlaI CTCGAG 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
SphI GCATGC 1 cut(s) 105
Sse9I AATT 2 cut(s) 289, 561
SseBI AGGCCT 1 cut(s) 158
SspI AATATT 1 cut(s) 268
SspMI CTAG 1 cut(s) 524
SstI GAGCTC 1 cut(s) 582
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 2 cut(s) 66, 384
TaaI ACNGT 1 cut(s) 287
TaqI TCGA 4 cut(s) 32, 115, 345, 567
TasI AATT 2 cut(s) 289, 561
TfiI GAWTC 2 cut(s) 110, 452
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 1 cut(s) 465
Tsp45I GTSAC 1 cut(s) 465
TspDTI ATGAA 4 cut(s) 151, 372, 441, 531
TspRI CASTG 1 cut(s) 474
Tth111I GACNNNGTC 1 cut(s) 551
XapI RAATTY 1 cut(s) 561
XceI RCATGY 3 cut(s) 105, 134, 215
XhoI CTCGAG 1 cut(s) 114
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.