Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000548

Physical Location & Seq

Genomic Coordinates Reverse (-)

88719793 .. 88722997

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG660500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGGAAGAACTACGAGGAGGCCATTGCAGCTCTTCAGAAACTACTCAGCGAGAAGGGTGACCTGAAAACAGTTGCAGCTTCGAAAGTGGAGCAGATTACTGCTCAGTTGGCAACAGTCGACGCCGGCACCAAGCCCTTTGATCCCGTGGAGAGAATCAAAAGCGGCTTCATTCACTTCAAGAAAGAGAAATATGACACAAACCCAGCACTATATGGTGAACTTGCCAAAGGTCAAGCCCCCAAGTTTATGTTGTTTGCATGCTCGGATTCCCGGGTTTGCCCATCCCACACTTTGGATATGCAGCCTGGTGAGGCTTTTGTGGTCCGTAATGTTGCAAATATGGTCCCTCCATTTGATAAGGTCAGGTACGCCGGAGTTGGGTCGGCCATTGAGTATGCTGTCTTGCATCTGAAGGTTTCATACATTGTGGTGATCGGGCACAGCGCTTGTGGTGGAATTAAGGGACTCCTGTCTTTTCCAGATGATGGACCAACTTCCACTGACTTCATAGAAGACTGGGTCAAAATTGGCCAAGCTGCCAAGAACAAGGTGAAGGCACTACATGAAGGTGCTTCCTTCCCTGAACTATGCACTCACTGTGAAAAGGAGGCTGTGAATGTTTCCATTGGAAATCTGCTGAGCTATCCTTTTGTGAGAGACGGGTTGGTGAACAAGACCCTTGGATTAAAGGGGGGCTACTATGATTTTGTCAAAGGAAACTTTGAGTTGTGGGATGTTGATTTTGGCCTTTCTCCAGACTTCTCCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

257

Amino Acids

27.96

Weight (kDa)

6.09

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	84 - 241	1.5e-40	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca	FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica	MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica	Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis	pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis	RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata	RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora	Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii	Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa	Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha	Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana	Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AccB7I	CCANNNNNTGG	2 cut(s)	295, 488
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	2 cut(s)	387, 532
AcuI	CTGAAG	2 cut(s)	20, 434
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	371
AfeI	AGCGCT	1 cut(s)	448
AfiI	CCNNNNNNNGG	3 cut(s)	295, 381, 488
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	4 cut(s)	32, 80, 539, 645
AluI	AGCT	4 cut(s)	32, 80, 539, 645
Alw26I	GTCTC	1 cut(s)	654
AlwI	GGATC	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	273
Aor51HI	AGCGCT	1 cut(s)	448
AoxI	GGCC	4 cut(s)	21, 387, 532, 748
ApeKI	GCWGC	4 cut(s)	29, 77, 304, 539
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	3 cut(s)	325, 346, 491
AsuC2I	CCSGG	2 cut(s)	274, 275
AsuHPI	GGTGA	6 cut(s)	71, 230, 323, 445, 565, 682
AsuII	TTCGAA	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	3 cut(s)	325, 346, 491
BaeGI	GKGCMC	1 cut(s)	444
BalI	TGGCCA	1 cut(s)	534
BanI	GGYRCC	1 cut(s)	128
BarI	GAAGNNNNNNTAC	2 cut(s)	407, 439
BbsI	GAAGAC	1 cut(s)	522
BbvI	GCAGC	4 cut(s)	41, 89, 316, 526
BccI	CCATC	2 cut(s)	292, 482
BciT130I	CCWGG	1 cut(s)	309
BcnI	CCSGG	2 cut(s)	274, 275
BcoDI	GTCTC	1 cut(s)	654
BfoI	RGCGCY	1 cut(s)	450
BisI	GCNGC	5 cut(s)	30, 78, 166, 305, 540
BlpI	GCTNAGC	1 cut(s)	641
BlsI	GCNGC	5 cut(s)	31, 79, 167, 306, 541
Bme1390I	CCNGG	3 cut(s)	274, 275, 309
Bme18I	GGWCC	3 cut(s)	325, 346, 491
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	3 cut(s)	325, 346, 491
BmiI	GGNNCC	2 cut(s)	130, 348
BmrFI	CCNGG	3 cut(s)	274, 275, 309
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	529
BoxI	GACNNNNGTC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	522
BpmI	CTGGAG	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	641
Bpu14I	TTCGAA	1 cut(s)	83
BpuMI	CCSGG	2 cut(s)	274, 275
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	147, 273, 682
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 381, 488
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	524
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	3 cut(s)	147, 273, 682
BseGI	GGATG	2 cut(s)	284, 742
BseLI	CCNNNNNNNGG	3 cut(s)	295, 381, 488
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	3 cut(s)	61, 119, 632
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	4 cut(s)	41, 89, 316, 526
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	4 cut(s)	23, 389, 534, 750
BshNI	GGYRCC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	126, 274, 375
BslFI	GGGAC	2 cut(s)	332, 480
BslI	CCNNNNNNNGG	3 cut(s)	295, 381, 488
BsmAI	GTCTC	1 cut(s)	654
BsmBI	CGTCTC	1 cut(s)	654
BsmFI	GGGAC	2 cut(s)	332, 480
BsnI	GGCC	4 cut(s)	23, 389, 534, 750
BsoBI	CYCGRG	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	142, 435
Bsp1720I	GCTNAGC	1 cut(s)	641
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	4 cut(s)	23, 389, 534, 750
BspCNI	CTCAG	3 cut(s)	60, 118, 633
BspLI	GGNNCC	2 cut(s)	130, 348
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	524
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	3 cut(s)	147, 273, 682
BssMI	GATC	2 cut(s)	142, 435
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	682
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	73, 118, 602
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	127, 262
BstDEI	CTNAG	3 cut(s)	47, 105, 641
BstDSI	CCRYGG	1 cut(s)	147
BstEII	GGTNACC	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	284, 742
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	2 cut(s)	145, 438
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	2 cut(s)	142, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 110
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	264
BstPAI	GACNNNNGTC	1 cut(s)	472
BstPI	GGTNACC	1 cut(s)	59
BstSCI	CCNGG	3 cut(s)	272, 273, 307
BstSLI	GKGCMC	1 cut(s)	444
BstV1I	GCAGC	4 cut(s)	41, 89, 316, 526
BstV2I	GAAGAC	1 cut(s)	522
BsuRI	GGCC	4 cut(s)	23, 389, 534, 750
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	284, 742
BtsIMutI	CAGTG	2 cut(s)	501, 598
Cac8I	GCNNGC	2 cut(s)	127, 262
CfoI	GCGC	1 cut(s)	449
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	3 cut(s)	325, 346, 491
Cfr9I	CCCGGG	1 cut(s)	273
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	2 cut(s)	261, 566
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	3 cut(s)	47, 105, 641
DpnI	GATC	2 cut(s)	144, 437
DpnII	GATC	2 cut(s)	142, 435
EaeI	YGGCCR	2 cut(s)	387, 532
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	682
Eco47I	GGWCC	3 cut(s)	325, 346, 491
Eco47III	AGCGCT	1 cut(s)	448
Eco57I	CTGAAG	2 cut(s)	20, 434
Eco88I	CYCGRG	1 cut(s)	273
Eco91I	GGTNACC	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	682
Esp3I	CGTCTC	1 cut(s)	654
FaeI	CATG	2 cut(s)	264, 569
FaqI	GGGAC	2 cut(s)	332, 480
FatI	CATG	2 cut(s)	260, 565
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	5 cut(s)	30, 78, 166, 305, 540
FokI	GGATG	2 cut(s)	271, 749
Fsp4HI	GCNGC	5 cut(s)	30, 78, 166, 305, 540
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	5 cut(s)	30, 78, 166, 305, 540
GsaI	CCCAGC	1 cut(s)	209
GsuI	CTGGAG	1 cut(s)	741
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	4 cut(s)	23, 389, 534, 750
HapII	CCGG	3 cut(s)	126, 274, 375
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	449
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	264, 569
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	3 cut(s)	156, 269, 468
HpaII	CCGG	3 cut(s)	126, 274, 375
HphI	GGTGA	6 cut(s)	71, 230, 323, 445, 565, 682
Hpy166II	GTNNAC	3 cut(s)	121, 221, 673
Hpy188I	TCNGA	3 cut(s)	39, 268, 414
Hpy188III	TCNNGA	3 cut(s)	181, 482, 758
Hpy8I	GTNNAC	3 cut(s)	121, 221, 673
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	5 cut(s)	49, 409, 550, 563, 589
HpyCH4III	ACNGT	3 cut(s)	73, 118, 602
HpyCH4V	TGCA	7 cut(s)	29, 77, 260, 304, 338, 409, 594
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 110
HpyF3I	CTNAG	3 cut(s)	47, 105, 641
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	264, 569
HspAI	GCGC	1 cut(s)	447
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	142, 435
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	4 cut(s)	41, 89, 316, 526
LweI	GCATC	1 cut(s)	418
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	2 cut(s)	144, 437
MboI	GATC	2 cut(s)	142, 435
MboII	GAAGA	3 cut(s)	19, 26, 527
MhlI	GDGCHC	1 cut(s)	444
MlsI	TGGCCA	1 cut(s)	534
MluCI	AATT	2 cut(s)	459, 528
MluNI	TGGCCA	1 cut(s)	534
MlyI	GAGTC	1 cut(s)	462
MnlI	CCTC	5 cut(s)	10, 13, 307, 360, 604
Mox20I	TGGCCA	1 cut(s)	534
MroNI	GCCGGC	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	2 cut(s)	462, 689
MslI	CAYNNNNRTG	2 cut(s)	431, 570
Msp20I	TGGCCA	1 cut(s)	534
MspI	CCGG	3 cut(s)	126, 274, 375
MspR9I	CCNGG	3 cut(s)	274, 275, 309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	29, 110
NaeI	GCCGGC	1 cut(s)	127
NciI	CCSGG	2 cut(s)	274, 275
NdeII	GATC	2 cut(s)	142, 435
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	2 cut(s)	264, 569
NlaIV	GGNNCC	2 cut(s)	130, 348
NmuCI	GTSAC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	264
NspV	TTCGAA	1 cut(s)	83
PaeI	GCATGC	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	156, 269
PflFI	GACNNNGTC	1 cut(s)	521
PflMI	CCANNNNNTGG	2 cut(s)	295, 488
PkrI	GCNGC	5 cut(s)	31, 79, 167, 306, 541
PleI	GAGTC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	462
PshAI	GACNNNNGTC	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	307
PspEI	GGTNACC	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	130, 348
PspPI	GGNCC	3 cut(s)	325, 346, 491
PsyI	GACNNNGTC	1 cut(s)	521
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	2 cut(s)	431, 570
SalI	GTCGAC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	462, 689
SatI	GCNGC	5 cut(s)	30, 78, 166, 305, 540
Sau3AI	GATC	2 cut(s)	142, 435
Sau96I	GGNCC	3 cut(s)	325, 346, 491
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	3 cut(s)	274, 275, 309
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	83
SinI	GGWCC	3 cut(s)	325, 346, 491
SmaI	CCCGGG	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	431, 570
SphI	GCATGC	1 cut(s)	264
Sse9I	AATT	2 cut(s)	459, 528
SsiI	CCGC	1 cut(s)	165
StyD4I	CCNGG	3 cut(s)	272, 273, 307
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	3 cut(s)	73, 118, 602
TaqI	TCGA	2 cut(s)	83, 120
TasI	AATT	2 cut(s)	459, 528
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	156, 269
Tru1I	TTAA	2 cut(s)	462, 689
Tru9I	TTAA	2 cut(s)	462, 689
TscAI	CASTG	2 cut(s)	508, 605
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	4 cut(s)	29, 77, 304, 539
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	4 cut(s)	160, 411, 499, 582
TspGWI	ACGGA	2 cut(s)	317, 757
TspMI	CCCGGG	1 cut(s)	273
TspRI	CASTG	2 cut(s)	508, 605
Tth111I	GACNNNGTC	1 cut(s)	521
Van91I	CCANNNNNTGG	2 cut(s)	295, 488
VpaK11BI	GGWCC	3 cut(s)	325, 346, 491
XceI	RCATGY	1 cut(s)	264
XmaI	CCCGGG	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.