Rh5CG458100

Reversible hydration of carbon dioxide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000548
Physical Location & Seq
Reverse (-)
63640767 .. 63642556
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG458100.1

Sequence Viewer

Length: 777 bp
ATGACTAGCCAGTTATCTGATTTGACCAACATTCAAGATCTCATCTTGAAAAAGCTTGTGAGTTATCAGAAGGAAGACCTGGAAGATGTAGCTGCTCCCAAACTTCAGAACCTCAAGGTTGAGTGCAATGACCTGAAAGGAGCTGAACCAAATACACCGACCAGCCCAATAGCCAGCCCTCTCGACCCAGTTAAAAGAATTATAGATGGCTTCAAGTACTTCAAGACCAGCTACTTCGATTTATGGTATTTGCATGCTCGGATTCTCGAGTGTGTCCTTCACATGTTCTTCACTTCCAACCTGGGGAGGCCTTCATCGTTCGCAACATTAATTGCTAACATGGTTCCTGCTTTTGATCAGCTAAAACATGCAGGAGTTGGAGCAACCATAGAATATGCTGTCAAAGAACTCGGGGTGGCAAATATTTTGGTAATGGGACACAGTAATTGTGGTGGAATAAAGAGGCTAATGTCTTATCCGGAGGATGGCTCTGAACCCTTCGACTTCATAGATGAATGGGTGAAAATGATTTTACCAGCCAAGGCTGAGGTTATTGCAGAAGCTGGGAGTGCAGATTTCCACGAACAATGTGAAAGATGTGCAAGGGAATCAGTAAACTTGTCACTGGCAAACCTACTTACCTACCCCTTTGTTCAAAAGGCACACTTGGATGAAAAACTAGCACTTCGGGGTGGATACCATGACTTTGTCAATGGAATTTTCGAGCTATGGGAGCTCAAATCCCAAATTTTAAACCCCATCATCGTACAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Pro_CA

Protein Analysis

258

Amino Acids

28.86

Weight (kDa)

5.28

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_CA PF00484 110 - 239 2e-26 Carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 478
AcsI RAATTY 2 cut(s) 717, 747
AcuI CTGAAG 1 cut(s) 89
AfaI GTAC 2 cut(s) 218, 768
AfiI CCNNNNNNNGG 2 cut(s) 303, 485
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 5 cut(s) 35, 49, 214, 223, 656
AjnI CCWGG 2 cut(s) 78, 300
AluBI AGCT 8 cut(s) 55, 92, 143, 231, 361, 563, 727, 736
AluI AGCT 8 cut(s) 55, 92, 143, 231, 361, 563, 727, 736
Alw21I GWGCWC 1 cut(s) 738
AlwNI CAGNNNCTG 1 cut(s) 563
Ama87I CYCGRG 2 cut(s) 266, 410
Aor13HI TCCGGA 1 cut(s) 478
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 2 cut(s) 717, 747
AseI ATTAAT 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 532
AvaI CYCGRG 2 cut(s) 266, 410
BanII GRGCYC 1 cut(s) 738
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 738
BbvCI CCTCAGC 1 cut(s) 546
BbvI GCAGC 1 cut(s) 79
BccI CCATC 3 cut(s) 200, 479, 767
BciT130I CCWGG 2 cut(s) 80, 302
BciVI GTATCC 1 cut(s) 689
BclI TGATCA 1 cut(s) 355
BfaI CTAG 2 cut(s) 6, 680
BfuI GTATCC 1 cut(s) 689
BglII AGATCT 1 cut(s) 37
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 80, 302
BmeT110I CYCGRG 2 cut(s) 266, 410
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 2 cut(s) 80, 302
BmrI ACTGGG 1 cut(s) 182
BmuI ACTGGG 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 473, 505
Bpu10I CCTNAGC 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 301, 540
BsaWI WCCGGW 1 cut(s) 478
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 485
Bse1I ACTGG 3 cut(s) 10, 188, 630
Bse3DI GCAATG 1 cut(s) 133
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 2 cut(s) 80, 302
BseDI CCNNGG 2 cut(s) 301, 540
BseGI GGATG 2 cut(s) 490, 676
BseLI CCNNNNNNNGG 2 cut(s) 303, 485
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 537
BseNI ACTGG 3 cut(s) 10, 188, 630
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 563
BsgI GTGCAG 1 cut(s) 591
BshFI GGCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 738
BsiHKCI CYCGRG 2 cut(s) 266, 410
BsiSI CCGG 1 cut(s) 479
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 2 cut(s) 303, 485
BsmFI GGGAC 1 cut(s) 450
BsnI GGCC 1 cut(s) 310
BsoBI CYCGRG 2 cut(s) 266, 410
Bsp1286I GDGCHC 1 cut(s) 738
Bsp13I TCCGGA 1 cut(s) 478
Bsp143I GATC 2 cut(s) 37, 355
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 538
BspEI TCCGGA 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 3 cut(s) 10, 188, 630
BssECI CCNNGG 2 cut(s) 301, 540
BssMI GATC 2 cut(s) 37, 355
BssT1I CCWWGG 1 cut(s) 540
Bst2UI CCWGG 2 cut(s) 80, 302
Bst4CI ACNGT 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 175, 255
BstDEI CTNAG 1 cut(s) 546
BstF5I GGATG 2 cut(s) 490, 676
BstKTI GATC 2 cut(s) 40, 358
BstMBI GATC 2 cut(s) 37, 355
BstMWI GCNNNNNNNGC 2 cut(s) 569, 733
BstNI CCWGG 2 cut(s) 80, 302
BstNSI RCATGY 3 cut(s) 257, 286, 371
BstSCI CCNGG 2 cut(s) 78, 300
BstV1I GCAGC 1 cut(s) 79
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 1 cut(s) 689
BsuRI GGCC 1 cut(s) 310
BtsCI GGATG 2 cut(s) 490, 676
BtsIMutI CAGTG 1 cut(s) 623
Cac8I GCNNGC 2 cut(s) 175, 255
CaiI CAGNNNCTG 1 cut(s) 563
Csp6I GTAC 2 cut(s) 217, 767
CviAII CATG 5 cut(s) 254, 283, 340, 368, 701
CviQI GTAC 2 cut(s) 217, 767
DdeI CTNAG 1 cut(s) 546
DpnI GATC 2 cut(s) 39, 357
DpnII GATC 2 cut(s) 37, 355
DraI TTTAAA 1 cut(s) 753
Ecl136II GAGCTC 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 540
Eco147I AGGCCT 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 738
Eco53kI GAGCTC 1 cut(s) 736
Eco57I CTGAAG 1 cut(s) 89
Eco88I CYCGRG 2 cut(s) 266, 410
EcoICRI GAGCTC 1 cut(s) 736
EcoRII CCWGG 2 cut(s) 78, 300
EcoT14I CCWWGG 1 cut(s) 540
EcoT38I GRGCYC 1 cut(s) 738
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 5 cut(s) 257, 286, 343, 371, 704
FalI AAGNNNNNCTT 2 cut(s) 650, 682
FaqI GGGAC 1 cut(s) 450
FatI CATG 5 cut(s) 253, 282, 339, 367, 700
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 2 cut(s) 497, 683
FriOI GRGCYC 1 cut(s) 738
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 2 cut(s) 6, 680
GluI GCNGC 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 567
HaeIII GGCC 1 cut(s) 310
HapII CCGG 1 cut(s) 479
Hin1II CATG 5 cut(s) 257, 286, 343, 371, 704
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 262, 608
HpaII CCGG 1 cut(s) 479
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 5 cut(s) 19, 69, 108, 261, 493
Hpy188III TCNNGA 7 cut(s) 35, 46, 182, 223, 266, 479, 774
Hpy8I GTNNAC 1 cut(s) 616
HpyAV CCTTC 4 cut(s) 64, 287, 321, 508
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4V TGCA 6 cut(s) 126, 253, 371, 557, 572, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 733
HpyF3I CTNAG 1 cut(s) 546
Hsp92II CATG 5 cut(s) 257, 286, 343, 371, 704
Kpn2I TCCGGA 1 cut(s) 478
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 2 cut(s) 37, 355
LmnI GCTCC 4 cut(s) 100, 140, 380, 733
Lsp1109I GCAGC 1 cut(s) 79
MaeI CTAG 2 cut(s) 6, 680
MaeIII GTNAC 1 cut(s) 621
MalI GATC 2 cut(s) 39, 357
MboI GATC 2 cut(s) 37, 355
MboII GAAGA 3 cut(s) 86, 95, 280
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 738
MluCI AATT 5 cut(s) 198, 330, 445, 717, 747
MmeI TCCRAC 2 cut(s) 321, 358
MnlI CCTC 6 cut(s) 122, 189, 300, 456, 475, 541
MroI TCCGGA 1 cut(s) 478
MseI TTAA 3 cut(s) 192, 329, 752
MslI CAYNNNNRTG 1 cut(s) 669
MspI CCGG 1 cut(s) 479
MspR9I CCNGG 2 cut(s) 80, 302
MvaI CCWGG 2 cut(s) 80, 302
MwoI GCNNNNNNNGC 2 cut(s) 569, 733
NdeII GATC 2 cut(s) 37, 355
NlaIII CATG 5 cut(s) 257, 286, 343, 371, 704
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 621
NspI RCATGY 3 cut(s) 257, 286, 371
PaeI GCATGC 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 266
PceI AGGCCT 1 cut(s) 310
PciI ACATGT 1 cut(s) 282
PfeI GAWTC 2 cut(s) 262, 608
PflFI GACNNNGTC 1 cut(s) 707
PkrI GCNGC 1 cut(s) 94
PscI ACATGT 1 cut(s) 282
PshBI ATTAAT 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 738
Psp6I CCWGG 2 cut(s) 78, 300
PspFI CCCAGC 1 cut(s) 563
PspGI CCWGG 2 cut(s) 78, 300
PspN4I GGNNCC 1 cut(s) 345
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 1 cut(s) 37
PsyI GACNNNGTC 1 cut(s) 707
RsaI GTAC 2 cut(s) 218, 768
RsaNI GTAC 2 cut(s) 217, 767
RseI CAYNNNNRTG 1 cut(s) 669
SacI GAGCTC 1 cut(s) 738
SaqAI TTAA 3 cut(s) 192, 329, 752
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 2 cut(s) 37, 355
ScaI AGTACT 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 80, 302
SduI GDGCHC 1 cut(s) 738
Sfr274I CTCGAG 1 cut(s) 266
SlaI CTCGAG 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 2 cut(s) 113, 266
SmoI CTYRAG 2 cut(s) 113, 266
SphI GCATGC 1 cut(s) 257
Sse9I AATT 5 cut(s) 198, 330, 445, 717, 747
SseBI AGGCCT 1 cut(s) 310
SspI AATATT 1 cut(s) 424
SspMI CTAG 2 cut(s) 6, 680
SstI GAGCTC 1 cut(s) 738
StuI AGGCCT 1 cut(s) 310
StyD4I CCNGG 2 cut(s) 78, 300
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 1 cut(s) 443
TaqI TCGA 5 cut(s) 183, 237, 267, 501, 723
TasI AATT 5 cut(s) 198, 330, 445, 717, 747
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 2 cut(s) 262, 608
Tru1I TTAA 3 cut(s) 192, 329, 752
Tru9I TTAA 3 cut(s) 192, 329, 752
TscAI CASTG 1 cut(s) 630
TseFI GTSAC 1 cut(s) 621
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 621
TspDTI ATGAA 4 cut(s) 303, 496, 528, 687
TspRI CASTG 1 cut(s) 630
Tth111I GACNNNGTC 1 cut(s) 707
VspI ATTAAT 1 cut(s) 329
XapI RAATTY 2 cut(s) 717, 747
XceI RCATGY 3 cut(s) 257, 286, 371
XhoI CTCGAG 1 cut(s) 266
XspI CTAG 2 cut(s) 6, 680
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.