FvH4_2g14190

Reversible hydration of carbon dioxide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000548
Physical Location & Seq
Forward (+)
12451661 .. 12454054
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14190.t1

Sequence Viewer

Length: 759 bp
ATGGCGAGCCAGTTGGCAATTCATCGGTTGAACAAGTTCCTCAGTGAGAAGGAAGACTTGGATGAAGTGGCTGCTGCCAAAATTGACAAGCTAATTGCTGAGTTGCAAACGCCTGGTGATCATCATTTTGATCCAGTTCAAAGGATTATAAATGGCTTCATGGACTTCAAGATCCACAAATTCGACAAATATCCATGTCTGTTCGACAAGCTTGCCTTAGGACAAAGCCCCAAATTTCTGGTGTTTGCATGCTCAGACTCTCGAGTGAGCCCCTCTATCATCCTTAACTTCAAACCTGGGGAGGCCTTCATGGTTCGTAACATTGCTAACTTGGTCCCTCCATCTAACCAGCTTAGATATTCAGGAACTGGAGCAATCTTAGAATATGCCATAACAGTACTTCAGGTAGAAAACATTTTGGTCATTGGGCATAGTAGCTGTGGTGGGATAAAGAGGCTTATGGAGCATCCAGAAGATGGCAGTATTCCCTTTGACTTCATAGATGACTGGGTTAACATTGCTGTAGATGCCAAGGACAAAGTTAAAGCACAAGGTGAAGGACATGAGGCTTGTGCTAGAGAAGCTGTAAATGTCTCTCTGGCGAATCTGCTCACTTATCCTTACGTTCAGAAGGACGCTTCGGAAAGAAAGCTAGCACTTAGAGGTGGTTACTATGACTTTGCTAATGGAGTCTTCGAGCTGTGGGAGAAACACGGATCTCACATTTCACCCCCCATGGTGATACCACCACATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Pro_CA

Protein Analysis

253

Amino Acids

28.06

Weight (kDa)

5.92

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_CA PF00484 80 - 230 2e-39 Carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
AccB7I CCANNNNNTGG 1 cut(s) 476
AclWI GGATC 3 cut(s) 125, 166, 724
AcsI RAATTY 2 cut(s) 179, 233
AcuI CTGAAG 1 cut(s) 386
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 4 cut(s) 31, 140, 169, 292
AjnI CCWGG 2 cut(s) 112, 295
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 7 cut(s) 91, 211, 352, 438, 584, 652, 700
AluI AGCT 7 cut(s) 91, 211, 352, 438, 584, 652, 700
Alw26I GTCTC 1 cut(s) 598
AlwI GGATC 3 cut(s) 125, 166, 724
AlwNI CAGNNNCTG 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 71, 74
ApoI RAATTY 2 cut(s) 179, 233
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 4 cut(s) 128, 566, 720, 751
AsuNHI GCTAGC 1 cut(s) 652
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 334
AxyI CCTNAGG 1 cut(s) 217
BanII GRGCYC 1 cut(s) 272
BbsI GAAGAC 2 cut(s) 60, 685
BbvI GCAGC 2 cut(s) 58, 61
BccI CCATC 2 cut(s) 349, 470
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 2 cut(s) 114, 297
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 598
BfaI CTAG 2 cut(s) 576, 653
BfmI CTRYAG 1 cut(s) 522
BisI GCNGC 2 cut(s) 72, 75
BlsI GCNGC 2 cut(s) 73, 76
BmcAI AGTACT 1 cut(s) 399
Bme1390I CCNGG 2 cut(s) 114, 297
Bme18I GGWCC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 114, 297
BmrI ACTGGG 1 cut(s) 517
BmsI GCATC 2 cut(s) 475, 517
BmtI GCTAGC 1 cut(s) 656
BmuI ACTGGG 1 cut(s) 517
BpiI GAAGAC 2 cut(s) 60, 685
BpmI CTGGAG 1 cut(s) 390
BsaJI CCNNGG 3 cut(s) 296, 531, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 4 cut(s) 10, 134, 373, 512
Bse21I CCTNAGG 1 cut(s) 217
Bse3DI GCAATG 2 cut(s) 321, 516
BseBI CCWGG 2 cut(s) 114, 297
BseDI CCNNGG 3 cut(s) 296, 531, 735
BseGI GGATG 4 cut(s) 67, 279, 466, 751
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 2 cut(s) 321, 516
BseMII CTCAG 3 cut(s) 55, 90, 267
BseNI ACTGG 4 cut(s) 10, 134, 373, 512
BseXI GCAGC 2 cut(s) 58, 61
BshFI GGCC 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 1 cut(s) 598
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 4 cut(s) 118, 130, 171, 716
Bsp19I CCATGG 1 cut(s) 735
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 3 cut(s) 54, 91, 266
BspLI GGNNCC 1 cut(s) 336
BspOI GCTAGC 1 cut(s) 656
BspPI GGATC 3 cut(s) 125, 166, 724
BsrDI GCAATG 2 cut(s) 321, 516
BsrI ACTGG 4 cut(s) 10, 134, 373, 512
BssECI CCNNGG 3 cut(s) 296, 531, 735
BssMI GATC 4 cut(s) 118, 130, 171, 716
BssT1I CCWWGG 2 cut(s) 531, 735
Bst2UI CCWGG 2 cut(s) 114, 297
Bst4CI ACNGT 1 cut(s) 397
BstC8I GCNNGC 4 cut(s) 7, 213, 250, 654
BstDEI CTNAG 7 cut(s) 41, 99, 217, 253, 353, 379, 659
BstDSI CCRYGG 1 cut(s) 735
BstF5I GGATG 4 cut(s) 67, 279, 466, 751
BstKTI GATC 4 cut(s) 121, 133, 174, 719
BstMAI GTCTC 1 cut(s) 598
BstMBI GATC 4 cut(s) 118, 130, 171, 716
BstMWI GCNNNNNNNGC 3 cut(s) 463, 527, 581
BstNI CCWGG 2 cut(s) 114, 297
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 112, 295
BstSFI CTRYAG 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 58, 61
BstV2I GAAGAC 2 cut(s) 60, 685
BstX2I RGATCY 2 cut(s) 171, 716
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 2 cut(s) 171, 716
Bsu36I CCTNAGG 1 cut(s) 217
BsuRI GGCC 1 cut(s) 305
BtgI CCRYGG 1 cut(s) 735
BtsCI GGATG 4 cut(s) 67, 279, 466, 751
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 4 cut(s) 7, 213, 250, 654
CaiI CAGNNNCTG 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 334
CseI GACGC 1 cut(s) 644
Csp6I GTAC 1 cut(s) 398
CviAII CATG 6 cut(s) 160, 195, 249, 310, 563, 736
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 7 cut(s) 41, 99, 217, 253, 353, 379, 659
DpnI GATC 4 cut(s) 120, 132, 173, 718
DpnII GATC 4 cut(s) 118, 130, 171, 716
DraIII CACNNNGTG 1 cut(s) 554
Eco130I CCWWGG 2 cut(s) 531, 735
Eco147I AGGCCT 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 386
Eco81I CCTNAGG 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 112, 295
EcoT14I CCWWGG 2 cut(s) 531, 735
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 2 cut(s) 531, 735
FaeI CATG 6 cut(s) 163, 198, 252, 313, 566, 739
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 200, 232
FaqI GGGAC 1 cut(s) 320
FatI CATG 6 cut(s) 159, 194, 248, 309, 562, 735
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 72, 75
FokI GGATG 4 cut(s) 74, 266, 453, 738
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 2 cut(s) 72, 75
FspBI CTAG 2 cut(s) 576, 653
GluI GCNGC 2 cut(s) 72, 75
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 1 cut(s) 305
HgaI GACGC 1 cut(s) 644
Hin1II CATG 6 cut(s) 163, 198, 252, 313, 566, 739
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 3 cut(s) 257, 604, 690
HpaI GTTAAC 1 cut(s) 514
HphI GGTGA 4 cut(s) 128, 566, 720, 751
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 3 cut(s) 256, 630, 643
Hpy188III TCNNGA 4 cut(s) 169, 261, 363, 470
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 4 cut(s) 43, 316, 551, 625
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 2 cut(s) 106, 248
HpyF10VI GCNNNNNNNGC 3 cut(s) 463, 527, 581
HpyF3I CTNAG 7 cut(s) 41, 99, 217, 253, 353, 379, 659
HpySE526I ACGT 1 cut(s) 624
Hsp92II CATG 6 cut(s) 163, 198, 252, 313, 566, 739
Ksp22I TGATCA 1 cut(s) 118
KspAI GTTAAC 1 cut(s) 514
Kzo9I GATC 4 cut(s) 118, 130, 171, 716
LmnI GCTCC 2 cut(s) 371, 463
Lsp1109I GCAGC 2 cut(s) 58, 61
LweI GCATC 2 cut(s) 475, 517
MaeI CTAG 2 cut(s) 576, 653
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 2 cut(s) 317, 668
MalI GATC 4 cut(s) 120, 132, 173, 718
MboI GATC 4 cut(s) 118, 130, 171, 716
MboII GAAGA 3 cut(s) 65, 485, 685
MflI RGATCY 2 cut(s) 171, 716
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 5 cut(s) 18, 81, 93, 179, 233
MlyI GAGTC 2 cut(s) 251, 699
MnlI CCTC 7 cut(s) 50, 283, 295, 348, 447, 559, 656
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 3 cut(s) 285, 513, 543
MspR9I CCNGG 2 cut(s) 114, 297
MvaI CCWGG 2 cut(s) 114, 297
MwoI GCNNNNNNNGC 3 cut(s) 463, 527, 581
NcoI CCATGG 1 cut(s) 735
NdeII GATC 4 cut(s) 118, 130, 171, 716
NheI GCTAGC 1 cut(s) 652
NlaIII CATG 6 cut(s) 163, 198, 252, 313, 566, 739
NlaIV GGNNCC 1 cut(s) 336
NspI RCATGY 1 cut(s) 252
PaeI GCATGC 1 cut(s) 252
PaeR7I CTCGAG 1 cut(s) 261
PceI AGGCCT 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 604
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 2 cut(s) 73, 76
PleI GAGTC 2 cut(s) 251, 698
PpsI GAGTC 2 cut(s) 251, 698
PsiI TTATAA 1 cut(s) 149
Psp6I CCWGG 2 cut(s) 112, 295
PspGI CCWGG 2 cut(s) 112, 295
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 2 cut(s) 171, 716
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
SaqAI TTAA 3 cut(s) 285, 513, 543
SatI GCNGC 2 cut(s) 72, 75
Sau3AI GATC 4 cut(s) 118, 130, 171, 716
Sau96I GGNCC 1 cut(s) 334
ScaI AGTACT 1 cut(s) 399
SchI GAGTC 2 cut(s) 251, 699
ScrFI CCNGG 2 cut(s) 114, 297
SduI GDGCHC 1 cut(s) 272
SfaNI GCATC 2 cut(s) 475, 517
SfcI CTRYAG 1 cut(s) 522
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 334
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
SphI GCATGC 1 cut(s) 252
Sse9I AATT 5 cut(s) 18, 81, 93, 179, 233
SseBI AGGCCT 1 cut(s) 305
SspMI CTAG 2 cut(s) 576, 653
StuI AGGCCT 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 112, 295
StyI CCWWGG 2 cut(s) 531, 735
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 1 cut(s) 627
TaqI TCGA 4 cut(s) 183, 204, 262, 696
TasI AATT 5 cut(s) 18, 81, 93, 179, 233
TatI WGTACW 1 cut(s) 397
TfiI GAWTC 1 cut(s) 604
Tru1I TTAA 3 cut(s) 285, 513, 543
Tru9I TTAA 3 cut(s) 285, 513, 543
TscAI CASTG 1 cut(s) 49
TseI GCWGC 2 cut(s) 71, 74
TspDTI ATGAA 5 cut(s) 11, 78, 148, 298, 487
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 1 cut(s) 49
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 334
XapI RAATTY 2 cut(s) 179, 233
XceI RCATGY 1 cut(s) 252
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 2 cut(s) 576, 653
ZrmI AGTACT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.