Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000548

Physical Location & Seq

Genomic Coordinates Forward (+)

68314004 .. 68315819

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0556600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGTCGTTCCTATTACCACCCACTATTGCGCTCAGTTCAGCCTGGTTCTTCAGATTCAACAACTCCTACTTGATCTACAGGAATGATTCTGATTCCGAGACTCATGGCTTTCTCAGAGTCAACGGATCGAATGTCTTCAGCCCATTAGCAAAGTTCGAAGTGTACAGAAAGTTCCTGCGAAGCAGATTTGAGAGTGATGTGCACCTTACTCCTGAGGCTGATGAACCAGAGGAGGACCAATCCAAATGGTCGTGTACATTATTTGAGCCTCAAGTAGCTGAAGATGGCAACCCCGACAAAGCCCGGTTGTTCCATGTCCAATCAAAACAATATGCAACGACATGGGACATAGGTGGAGACTGTGGAGTAAGGGTCTTGAGATTAATTGATGGGCAGAATCATCAGAATATCTTCGATATCATCGACTTGGAGTCATTGGTGATATTGCCAAAGCATGTGGCCTTCAAAGGCCACACCGGCAATTACCTTCAGCTTGTGGCGGATGCTAAGCTCAGGTTCATATCCACCGATAAGGGGATTCCTGAGTCCTGGTTTGAGGTGTCCACTGATGGCCATGGAAGAGTACAAATCAAATCCTACCACGACAATAGCTACTTTTTTAACAGCAGTGACAGGATTTGGTCTGACCCAAGGGTTGCCGCCACCGATCCTAGCACCTTGTTTTGGCCGGTGAAGATCGACAGTAATAAGGTCGCTCTCAAAAGCAACAACAAATTTTGCACCCAAATCAGTGATGCTAATGGAACCGACGCCCTCAATGCAGTCTACACCAGCATTCCAACCAACTCATGCTTCACGCTGGAAGAGCTTGTTCTCTCTAGGAGAATCTACAACACCGACTTCGACCTTAAGAATGCCATAATCTACGGCGAGACCCCGGTCACCATGGCCACCGCAAATGCCAGCAACAACACCTCAGCAGACAACACTGTGGAATTCAAGTTCGCTTACACGGAGAGTAAGAGCAGCACGTGGAGCGCCAGCCACTCGTGGATGGTGGGAGTGAGTGCCACCGCCAGCTTCAAAGTTCCATTCATCGGCGGTACTAAGGTCACTGCTTCCGCAGAATATTCCGGATCATACGAGTGGGGAGAGACAATTACATCCGAAAACACGTTGGAGACCACCTACACGGTTACAGTGCCGGCAAACACTTCGATATCTATGAGCCTGATGGCGACTAAGGGAACTTGCGACGTGCCTTACTCTTATTATCAGCGGGACGTGCTTTATAACGGTAAAACCGTTGTCTATAAGAAAGATGACGGGCTATACACGGGTGTTAATTCATACAACTTCCGCTATGAGGTTACAACACTGAAAGAGCCAGAAACTAGAGCTGATTTGCCGACCAGACAGCAGAAGTTGCCGGACCCATCGGTCGATCCCTCCATAGAACAAAAGCTACCTCTGCCCTTGCCGTCTGAATCAACCACCAGAGTGCAAAACAAGGTGACCTCCACCACCACCTCGGAGCAAGAGTTGTCAAAGCTGGGATTAGAAGATGCAGCCAGCTCTGCCATGAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

517

Amino Acids

57.81

Weight (kDa)

5.23

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agglutinin	PF07468	55 - 141	2.5e-08	Agglutinin domain
Aerolysin	PF01117	289 - 411	1.5e-08	Aerolysin toxin
ETX_MTX2	PF03318	298 - 410	7.8e-08	Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca	FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica	MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica	Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis	pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis	RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata	RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora	Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii	Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa	Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha	Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana	Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1254
AasI	GACNNNNNNGTC	1 cut(s)	1400
AccI	GTMKAC	1 cut(s)	786
AccIII	TCCGGA	1 cut(s)	1094
AciI	CCGC	8 cut(s)	500, 660, 915, 1035, 1062, 1083, 1240, 1321
AclWI	GGATC	4 cut(s)	133, 662, 1105, 1400
AcoI	YGGCCR	3 cut(s)	571, 686, 909
AcsI	RAATTY	2 cut(s)	734, 956
AcuI	CTGAAG	4 cut(s)	34, 121, 300, 473
AcvI	CACGTG	1 cut(s)	993
AcyI	GRCGYC	1 cut(s)	771
AfaI	GTAC	4 cut(s)	164, 256, 585, 1066
AfiI	CCNNNNNNNGG	4 cut(s)	534, 684, 1058, 1327
AflII	CTTAAG	1 cut(s)	869
AflIII	ACRYGT	1 cut(s)	1134
AgsI	TTSAA	4 cut(s)	58, 466, 961, 1045
AhdI	GACNNNNNGTC	1 cut(s)	430
AjiI	CACGTC	2 cut(s)	1219, 1246
AjnI	CCWGG	2 cut(s)	41, 548
AjuI	GAANNNNNNNTTGG	2 cut(s)	797, 829
AleI	CACNNNNGTG	1 cut(s)	1460
AloI	GAACNNNNNNTCC	2 cut(s)	947, 979
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	5 cut(s)	92, 351, 887, 1109, 1136
Alw44I	GTGCAC	1 cut(s)	200
AlwI	GGATC	4 cut(s)	133, 662, 1105, 1400
Aor13HI	TCCGGA	1 cut(s)	1094
AoxI	GGCC	5 cut(s)	459, 469, 571, 686, 909
ApaLI	GTGCAC	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	987, 1529
ApoI	RAATTY	2 cut(s)	734, 956
AseI	ATTAAT	1 cut(s)	383
Asp700I	GAANNNNTTC	2 cut(s)	134, 410
AspLEI	GCGC	2 cut(s)	31, 1001
AspS9I	GGNCC	2 cut(s)	235, 1393
AsuC2I	CCSGG	2 cut(s)	304, 899
AsuHPI	GGTGA	4 cut(s)	451, 703, 895, 1486
AsuII	TTCGAA	1 cut(s)	156
AvaII	GGWCC	2 cut(s)	235, 1393
AxyI	CCTNAGG	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	204
BaeI	ACNNNNGTAYC	2 cut(s)	1056, 1089
BalI	TGGCCA	2 cut(s)	573, 911
BauI	CACGAG	1 cut(s)	1009
BbrPI	CACGTG	1 cut(s)	993
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	937
BbvI	GCAGC	2 cut(s)	999, 1541
BccI	CCATC	6 cut(s)	278, 383, 563, 1009, 1189, 1405
BceAI	ACGGC	2 cut(s)	904, 1426
BcgI	CGANNNNNNTGC	2 cut(s)	1158, 1192
BciT130I	CCWGG	2 cut(s)	43, 550
BcnI	CCSGG	2 cut(s)	304, 899
BcoDI	GTCTC	5 cut(s)	92, 351, 887, 1109, 1136
BfaI	CTAG	4 cut(s)	672, 840, 1356, 1552
BfmI	CTRYAG	1 cut(s)	76
BfoI	RGCGCY	1 cut(s)	1002
BfrI	CTTAAG	1 cut(s)	869
BglI	GCCNNNNNGGC	1 cut(s)	477
BisI	GCNGC	3 cut(s)	660, 988, 1530
BlpI	GCTNAGC	1 cut(s)	507
BlsI	GCNGC	3 cut(s)	661, 989, 1531
Bme1390I	CCNGG	4 cut(s)	43, 304, 550, 899
Bme18I	GGWCC	2 cut(s)	235, 1393
BmeRI	GACNNNNNGTC	1 cut(s)	430
BmgBI	CACGTC	2 cut(s)	1219, 1246
BmgT120I	GGNCC	2 cut(s)	235, 1393
BmiI	GGNNCC	2 cut(s)	766, 1395
BmrFI	CCNGG	4 cut(s)	43, 304, 550, 899
BmsI	GCATC	3 cut(s)	493, 745, 1516
BoxI	GACNNNNGTC	1 cut(s)	899
BpiI	GAAGAC	1 cut(s)	127
Bpu10I	CCTNAGC	2 cut(s)	512, 937
Bpu1102I	GCTNAGC	1 cut(s)	507
Bpu14I	TTCGAA	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	255, 397
BpuMI	CCSGG	2 cut(s)	304, 899
BsaAI	YACGTR	1 cut(s)	993
BsaHI	GRCGYC	1 cut(s)	771
BsaI	GGTCTC	2 cut(s)	887, 1136
BsaJI	CCNNGG	5 cut(s)	574, 650, 897, 906, 1491
BsaWI	WCCGGW	1 cut(s)	1094
BsaXI	ACNNNNNCTCC	4 cut(s)	357, 387, 1487, 1517
Bsc4I	CCNNNNNNNGG	4 cut(s)	534, 684, 1058, 1327
Bse118I	RCCGGY	3 cut(s)	476, 688, 1165
Bse21I	CCTNAGG	1 cut(s)	213
BseAI	TCCGGA	1 cut(s)	1094
BseBI	CCWGG	2 cut(s)	43, 550
BseDI	CCNNGG	5 cut(s)	574, 650, 897, 906, 1491
BseGI	GGATG	3 cut(s)	508, 1020, 1124
BseLI	CCNNNNNNNGG	4 cut(s)	534, 684, 1058, 1327
BseMII	CTCAG	6 cut(s)	46, 127, 204, 526, 534, 951
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	999, 1541
BseYI	CCCAGC	1 cut(s)	1513
Bsh1285I	CGRYCG	1 cut(s)	1404
BshFI	GGCC	5 cut(s)	461, 471, 573, 688, 911
BsiEI	CGRYCG	1 cut(s)	1404
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	7 cut(s)	304, 477, 689, 899, 1095, 1166, 1391
BslFI	GGGAC	2 cut(s)	359, 1256
BslI	CCNNNNNNNGG	4 cut(s)	534, 684, 1058, 1327
BsmAI	GTCTC	5 cut(s)	92, 351, 887, 1109, 1136
BsmFI	GGGAC	2 cut(s)	359, 1256
BsmI	GAATGC	2 cut(s)	795, 880
BsnI	GGCC	5 cut(s)	461, 471, 573, 688, 911
Bso31I	GGTCTC	2 cut(s)	887, 1136
Bsp119I	TTCGAA	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	1094
Bsp1407I	TGTACA	2 cut(s)	162, 254
Bsp143I	GATC	6 cut(s)	72, 125, 667, 696, 1097, 1405
Bsp1720I	GCTNAGC	1 cut(s)	507
Bsp19I	CCATGG	2 cut(s)	574, 906
BspACI	CCGC	8 cut(s)	500, 660, 915, 1035, 1062, 1083, 1240, 1321
BspANI	GGCC	5 cut(s)	461, 471, 573, 688, 911
BspCNI	CTCAG	6 cut(s)	45, 126, 205, 525, 535, 950
BspEI	TCCGGA	1 cut(s)	1094
BspLI	GGNNCC	2 cut(s)	766, 1395
BspPI	GGATC	4 cut(s)	133, 662, 1105, 1400
BspQI	GCTCTTC	1 cut(s)	819
BspT104I	TTCGAA	1 cut(s)	156
BspTI	CTTAAG	1 cut(s)	869
BspTNI	GGTCTC	2 cut(s)	887, 1136
BsrFI	RCCGGY	3 cut(s)	476, 688, 1165
BsrGI	TGTACA	2 cut(s)	162, 254
BssAI	RCCGGY	3 cut(s)	476, 688, 1165
BssECI	CCNNGG	5 cut(s)	574, 650, 897, 906, 1491
BssMI	GATC	6 cut(s)	72, 125, 667, 696, 1097, 1405
BssNI	GRCGYC	1 cut(s)	771
BssSI	CACGAG	1 cut(s)	1009
BssT1I	CCWWGG	3 cut(s)	574, 650, 906
Bst2BI	CACGAG	1 cut(s)	1009
Bst2UI	CCWGG	2 cut(s)	43, 550
Bst4CI	ACNGT	7 cut(s)	362, 704, 952, 1156, 1162, 1259, 1267
Bst6I	CTCTTC	2 cut(s)	574, 819
BstACI	GRCGYC	1 cut(s)	771
BstAFI	CTTAAG	1 cut(s)	869
BstAPI	GCANNNNNTGC	1 cut(s)	1387
BstAUI	TGTACA	2 cut(s)	162, 254
BstBAI	YACGTR	1 cut(s)	993
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	5 cut(s)	925, 1003, 1039, 1167, 1534
BstDEI	CTNAG	9 cut(s)	32, 113, 213, 507, 512, 543, 937, 1068, 1203
BstDSI	CCRYGG	2 cut(s)	574, 906
BstEII	GGTNACC	2 cut(s)	901, 1474
BstF5I	GGATG	3 cut(s)	508, 1020, 1124
BstH2I	RGCGCY	1 cut(s)	1002
BstHHI	GCGC	2 cut(s)	31, 1001
BstKTI	GATC	6 cut(s)	75, 128, 670, 699, 1100, 1408
BstMAI	GTCTC	5 cut(s)	92, 351, 887, 1109, 1136
BstMBI	GATC	6 cut(s)	72, 125, 667, 696, 1097, 1405
BstMCI	CGRYCG	1 cut(s)	1404
BstMWI	GCNNNNNNNGC	8 cut(s)	477, 779, 826, 996, 1246, 1387, 1432, 1538
BstNI	CCWGG	2 cut(s)	43, 550
BstNSI	RCATGY	1 cut(s)	458
BstPAI	GACNNNNGTC	1 cut(s)	899
BstPI	GGTNACC	2 cut(s)	901, 1474
BstSCI	CCNGG	4 cut(s)	41, 302, 548, 897
BstSFI	CTRYAG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	999, 1541
BstV2I	GAAGAC	1 cut(s)	127
Bsu36I	CCTNAGG	1 cut(s)	213
BsuRI	GGCC	5 cut(s)	461, 471, 573, 688, 911
BtgI	CCRYGG	2 cut(s)	574, 906
BtrI	CACGTC	2 cut(s)	1219, 1246
BtsCI	GGATG	3 cut(s)	508, 1020, 1124
BtsI	GCAGTG	2 cut(s)	634, 1074
BtsIMutI	CAGTG	7 cut(s)	564, 634, 757, 948, 1074, 1167, 1337
Cac8I	GCNNGC	5 cut(s)	925, 1003, 1039, 1167, 1534
CfoI	GCGC	2 cut(s)	31, 1001
Cfr10I	RCCGGY	3 cut(s)	476, 688, 1165
Cfr13I	GGNCC	2 cut(s)	235, 1393
CseI	GACGC	1 cut(s)	779
Csp6I	GTAC	4 cut(s)	163, 255, 584, 1065
CspCI	CAANNNNNGTGG	2 cut(s)	438, 473
CviAII	CATG	8 cut(s)	104, 314, 342, 455, 575, 810, 907, 1543
CviQI	GTAC	4 cut(s)	163, 255, 584, 1065
DdeI	CTNAG	9 cut(s)	32, 113, 213, 507, 512, 543, 937, 1068, 1203
DpnI	GATC	6 cut(s)	74, 127, 669, 698, 1099, 1407
DpnII	GATC	6 cut(s)	72, 125, 667, 696, 1097, 1405
DrdI	GACNNNNNNGTC	1 cut(s)	1400
DriI	GACNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	1400
EaeI	YGGCCR	3 cut(s)	571, 686, 909
Eam1104I	CTCTTC	2 cut(s)	574, 819
Eam1105I	GACNNNNNGTC	1 cut(s)	430
EarI	CTCTTC	2 cut(s)	574, 819
EciI	GGCGGA	1 cut(s)	515
Eco130I	CCWWGG	3 cut(s)	574, 650, 906
Eco31I	GGTCTC	2 cut(s)	887, 1136
Eco32I	GATATC	2 cut(s)	418, 1182
Eco47I	GGWCC	2 cut(s)	235, 1393
Eco57I	CTGAAG	4 cut(s)	34, 121, 300, 473
Eco72I	CACGTG	1 cut(s)	993
Eco81I	CCTNAGG	1 cut(s)	213
Eco91I	GGTNACC	2 cut(s)	901, 1474
EcoO65I	GGTNACC	2 cut(s)	901, 1474
EcoRI	GAATTC	1 cut(s)	956
EcoRII	CCWGG	2 cut(s)	41, 548
EcoRV	GATATC	2 cut(s)	418, 1182
EcoT14I	CCWWGG	3 cut(s)	574, 650, 906
ErhI	CCWWGG	3 cut(s)	574, 650, 906
FaeI	CATG	8 cut(s)	107, 317, 345, 458, 578, 813, 910, 1546
FaqI	GGGAC	2 cut(s)	359, 1256
FatI	CATG	8 cut(s)	103, 313, 341, 454, 574, 809, 906, 1542
FauI	CCCGC	1 cut(s)	1233
FblI	GTMKAC	1 cut(s)	786
Fnu4HI	GCNGC	3 cut(s)	660, 988, 1530
FokI	GGATG	3 cut(s)	515, 1027, 1111
Fsp4HI	GCNGC	3 cut(s)	660, 988, 1530
FspBI	CTAG	4 cut(s)	672, 840, 1356, 1552
GlaI	GCGC	2 cut(s)	30, 1000
GluI	GCNGC	3 cut(s)	660, 988, 1530
GsaI	CCCAGC	1 cut(s)	1517
HaeII	RGCGCY	1 cut(s)	1002
HaeIII	GGCC	5 cut(s)	461, 471, 573, 688, 911
HapII	CCGG	7 cut(s)	304, 477, 689, 899, 1095, 1166, 1391
HgaI	GACGC	1 cut(s)	779
HhaI	GCGC	2 cut(s)	31, 1001
Hin1I	GRCGYC	1 cut(s)	771
Hin1II	CATG	8 cut(s)	107, 317, 345, 458, 578, 813, 910, 1546
Hin6I	GCGC	2 cut(s)	29, 999
HinP1I	GCGC	2 cut(s)	29, 999
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HpaII	CCGG	7 cut(s)	304, 477, 689, 899, 1095, 1166, 1391
HphI	GGTGA	4 cut(s)	451, 703, 895, 1486
Hpy166II	GTNNAC	6 cut(s)	121, 163, 202, 255, 564, 787
Hpy188I	TCNGA	9 cut(s)	53, 91, 97, 116, 405, 646, 1129, 1447, 1495
Hpy188III	TCNNGA	4 cut(s)	212, 376, 542, 1095
Hpy8I	GTNNAC	6 cut(s)	121, 163, 202, 255, 564, 787
Hpy99I	CGWCG	2 cut(s)	773, 1220
HpyAV	CCTTC	2 cut(s)	472, 497
HpyCH4III	ACNGT	7 cut(s)	362, 704, 952, 1156, 1162, 1259, 1267
HpyCH4IV	ACGT	4 cut(s)	992, 1136, 1218, 1245
HpyCH4V	TGCA	6 cut(s)	202, 335, 741, 782, 1465, 1529
HpyF10VI	GCNNNNNNNGC	8 cut(s)	477, 779, 826, 996, 1246, 1387, 1432, 1538
HpyF3I	CTNAG	9 cut(s)	32, 113, 213, 507, 512, 543, 937, 1068, 1203
HpySE526I	ACGT	4 cut(s)	992, 1136, 1218, 1245
Hsp92I	GRCGYC	1 cut(s)	771
Hsp92II	CATG	8 cut(s)	107, 317, 345, 458, 578, 813, 910, 1546
HspAI	GCGC	2 cut(s)	29, 999
Kpn2I	TCCGGA	1 cut(s)	1094
KroI	GCCGGC	1 cut(s)	1165
KroNI	GCCGGC	1 cut(s)	1167
Kzo9I	GATC	6 cut(s)	72, 125, 667, 696, 1097, 1405
LguI	GCTCTTC	1 cut(s)	819
LmnI	GCTCC	2 cut(s)	996, 1495
Lsp1109I	GCAGC	2 cut(s)	999, 1541
LweI	GCATC	3 cut(s)	493, 745, 1516
MaeI	CTAG	4 cut(s)	672, 840, 1356, 1552
MaeII	ACGT	4 cut(s)	992, 1136, 1218, 1245
MaeIII	GTNAC	6 cut(s)	629, 901, 1072, 1156, 1330, 1474
MalI	GATC	6 cut(s)	74, 127, 669, 698, 1099, 1407
MboI	GATC	6 cut(s)	72, 125, 667, 696, 1097, 1405
MboII	GAAGA	8 cut(s)	40, 127, 293, 403, 591, 706, 836, 1535
MhlI	GDGCHC	1 cut(s)	204
MlsI	TGGCCA	2 cut(s)	573, 911
MluCI	AATT	6 cut(s)	384, 481, 734, 956, 1119, 1306
MluNI	TGGCCA	2 cut(s)	573, 911
MlyI	GAGTC	4 cut(s)	94, 126, 440, 554
MmeI	TCCRAC	2 cut(s)	824, 1119
Mox20I	TGGCCA	2 cut(s)	573, 911
MroI	TCCGGA	1 cut(s)	1094
MroNI	GCCGGC	1 cut(s)	1165
MroXI	GAANNNNTTC	2 cut(s)	134, 410
MscI	TGGCCA	2 cut(s)	573, 911
MseI	TTAA	4 cut(s)	383, 621, 870, 1305
MslI	CAYNNNNRTG	2 cut(s)	1105, 1460
Msp20I	TGGCCA	2 cut(s)	573, 911
MspA1I	CMGCKG	1 cut(s)	1240
MspCI	CTTAAG	1 cut(s)	869
MspI	CCGG	7 cut(s)	304, 477, 689, 899, 1095, 1166, 1391
MspR9I	CCNGG	4 cut(s)	43, 304, 550, 899
Mva1269I	GAATGC	2 cut(s)	795, 880
MvaI	CCWGG	2 cut(s)	43, 550
MwoI	GCNNNNNNNGC	8 cut(s)	477, 779, 826, 996, 1246, 1387, 1432, 1538
NaeI	GCCGGC	1 cut(s)	1167
NciI	CCSGG	2 cut(s)	304, 899
NcoI	CCATGG	2 cut(s)	574, 906
NdeII	GATC	6 cut(s)	72, 125, 667, 696, 1097, 1405
NgoMIV	GCCGGC	1 cut(s)	1165
NlaIII	CATG	8 cut(s)	107, 317, 345, 458, 578, 813, 910, 1546
NlaIV	GGNNCC	2 cut(s)	766, 1395
NmuCI	GTSAC	4 cut(s)	629, 901, 1072, 1474
NspI	RCATGY	1 cut(s)	458
NspV	TTCGAA	1 cut(s)	156
OliI	CACNNNNGTG	1 cut(s)	1460
PciSI	GCTCTTC	1 cut(s)	819
PcsI	WCGNNNNNNNCGW	2 cut(s)	420, 1263
PctI	GAATGC	2 cut(s)	795, 880
PdiI	GCCGGC	1 cut(s)	1167
PdmI	GAANNNNTTC	2 cut(s)	134, 410
PfeI	GAWTC	7 cut(s)	54, 86, 92, 397, 538, 846, 1448
PkrI	GCNGC	3 cut(s)	661, 989, 1531
PleI	GAGTC	4 cut(s)	94, 125, 439, 553
PmaCI	CACGTG	1 cut(s)	993
PmlI	CACGTG	1 cut(s)	993
PpsI	GAGTC	4 cut(s)	94, 125, 439, 553
Ppu21I	YACGTR	1 cut(s)	993
PshAI	GACNNNNGTC	1 cut(s)	899
PshBI	ATTAAT	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	1254
Psp6I	CCWGG	2 cut(s)	41, 548
PspCI	CACGTG	1 cut(s)	993
PspEI	GGTNACC	2 cut(s)	901, 1474
PspFI	CCCAGC	1 cut(s)	1513
PspGI	CCWGG	2 cut(s)	41, 548
PspN4I	GGNNCC	2 cut(s)	766, 1395
PspPI	GGNCC	2 cut(s)	235, 1393
PsrI	GAACNNNNNNTAC	4 cut(s)	155, 187, 1410, 1442
RsaI	GTAC	4 cut(s)	164, 256, 585, 1066
RsaNI	GTAC	4 cut(s)	163, 255, 584, 1065
RseI	CAYNNNNRTG	2 cut(s)	1105, 1460
SapI	GCTCTTC	1 cut(s)	819
SaqAI	TTAA	4 cut(s)	383, 621, 870, 1305
SatI	GCNGC	3 cut(s)	660, 988, 1530
Sau3AI	GATC	6 cut(s)	72, 125, 667, 696, 1097, 1405
Sau96I	GGNCC	2 cut(s)	235, 1393
SchI	GAGTC	4 cut(s)	94, 126, 440, 554
ScrFI	CCNGG	4 cut(s)	43, 304, 550, 899
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	3 cut(s)	493, 745, 1516
SfcI	CTRYAG	1 cut(s)	76
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	2 cut(s)	235, 1393
SmiMI	CAYNNNNRTG	2 cut(s)	1105, 1460
SmlI	CTYRAG	3 cut(s)	270, 376, 869
SmoI	CTYRAG	3 cut(s)	270, 376, 869
Sse9I	AATT	6 cut(s)	384, 481, 734, 956, 1119, 1306
SsiI	CCGC	8 cut(s)	500, 660, 915, 1035, 1062, 1083, 1240, 1321
SspI	AATATT	1 cut(s)	1091
SspMI	CTAG	4 cut(s)	672, 840, 1356, 1552
StyD4I	CCNGG	4 cut(s)	41, 302, 548, 897
StyI	CCWWGG	3 cut(s)	574, 650, 906
TaaI	ACNGT	7 cut(s)	362, 704, 952, 1156, 1162, 1259, 1267
TaiI	ACGT	4 cut(s)	995, 1139, 1221, 1248
TaqI	TCGA	8 cut(s)	128, 156, 414, 423, 699, 864, 1178, 1404
TaqII	GACCGA	1 cut(s)	1390
TasI	AATT	6 cut(s)	384, 481, 734, 956, 1119, 1306
TatI	WGTACW	3 cut(s)	162, 254, 583
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	7 cut(s)	54, 86, 92, 397, 538, 846, 1448
Tru1I	TTAA	4 cut(s)	383, 621, 870, 1305
Tru9I	TTAA	4 cut(s)	383, 621, 870, 1305
TscAI	CASTG	7 cut(s)	571, 634, 757, 955, 1081, 1167, 1344
TseFI	GTSAC	4 cut(s)	629, 901, 1072, 1474
TseI	GCWGC	2 cut(s)	987, 1529
Tsp45I	GTSAC	4 cut(s)	629, 901, 1072, 1474
TspDTI	ATGAA	4 cut(s)	237, 508, 1045, 1299
TspGWI	ACGGA	2 cut(s)	138, 989
TspRI	CASTG	7 cut(s)	571, 634, 757, 955, 1081, 1167, 1344
Vha464I	CTTAAG	1 cut(s)	869
VneI	GTGCAC	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	235, 1393
VspI	ATTAAT	1 cut(s)	383
XapI	RAATTY	2 cut(s)	734, 956
XceI	RCATGY	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	786
XmnI	GAANNNNTTC	2 cut(s)	134, 410
XspI	CTAG	4 cut(s)	672, 840, 1356, 1552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.