Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000548

Physical Location & Seq

Genomic Coordinates Reverse (-)

37747699 .. 37751075

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGAAAGAACTACGAGGAGGCCATTGCAGCTCTTCAGAAACTTCTCAGTGAGAAGGATGACCTGAAAACTGTTGCAGCTTCGAAAGTGGAGCAGATTACTGCTCAGTTGGCAACCGCCGACGCCGGCAGCAATCCCTTTGATCCCGTGGAGAGAATCAAAACCGGCTTCATTAAATTCAAGAAAGAGAAATATGACACAAACCCAGCACTATATGGTGAACTTGCCAAAGGTCAAGCTCCTAAGTTTATGTTGTTTGCATGCTCGGATTCTCGGGTTTGCCCATCCCACATTTTGGATATGCAGCCTGGTGAGGCTTTTGTTGTTCGTAATGTTGCAAATATGGTCCCTCCATATGATAAGGTCAAGTACGCCGGAACCGGATCGGCCATTGAGTATGCTGTCTTGCATCTGAAGGTTTCATATATTGTGGTGATCGGACACAGCGCTTGTGGTGGAATTAAGGGACTCCTGTCATTTCCAGATGATGGACCAACTTCCACTGACTTCATTGAAGACTGGGTCAAAATTGGTAGAGCTGCCAAGACCAAGGTGAAGGCACTACATGAAGGTGCTTCATTTCCTGAACTATGCACTCACTGTGAAAAGGAGGCTGTGAATGTTTCCATTGGAAATCTGCTGAGCTATCCTTTTGTAAGAGACGGGTTGGTGAACAAGACCCTCGGATTAAAGGGGGGCTACTATGACTTTGTCAAAGGAAATTTTGAGTTGTGGGATGTTGATTTTGGCCTTTCTCCAGACTTCTCCGTCAAAGATGTGGCTACGGTACTACATTGGAAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

269

Amino Acids

29.28

Weight (kDa)

6.32

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	84 - 241	1.5e-41	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca	FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica	MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica	Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis	pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis	RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata	RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora	Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii	Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa	Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha	Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana	Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	767
AccB7I	CCANNNNNTGG	2 cut(s)	295, 488
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	2 cut(s)	137, 391
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	2 cut(s)	176, 721
AcuI	CTGAAG	2 cut(s)	20, 434
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	371, 789
AfeI	AGCGCT	1 cut(s)	448
AfiI	CCNNNNNNNGG	2 cut(s)	295, 488
AgsI	TTSAA	2 cut(s)	181, 515
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	6 cut(s)	32, 80, 239, 539, 645, 802
AluI	AGCT	6 cut(s)	32, 80, 239, 539, 645, 802
Alw26I	GTCTC	1 cut(s)	654
AlwI	GGATC	2 cut(s)	137, 391
Ama87I	CYCGRG	1 cut(s)	273
Aor51HI	AGCGCT	1 cut(s)	448
AoxI	GGCC	3 cut(s)	21, 387, 748
ApeKI	GCWGC	5 cut(s)	29, 77, 129, 304, 539
ApoI	RAATTY	2 cut(s)	176, 721
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	2 cut(s)	346, 491
AsuHPI	GGTGA	5 cut(s)	230, 323, 445, 565, 682
AsuII	TTCGAA	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	2 cut(s)	346, 491
BbsI	GAAGAC	1 cut(s)	522
BbvI	GCAGC	5 cut(s)	41, 89, 141, 316, 526
BccI	CCATC	2 cut(s)	292, 482
BciT130I	CCWGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	654
BfaI	CTAG	1 cut(s)	805
BfoI	RGCGCY	1 cut(s)	450
BisI	GCNGC	5 cut(s)	30, 78, 130, 305, 540
BlpI	GCTNAGC	1 cut(s)	641
BlsI	GCNGC	5 cut(s)	31, 79, 131, 306, 541
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	346, 491
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	346, 491
BmiI	GGNNCC	2 cut(s)	348, 379
BmrFI	CCNGG	1 cut(s)	309
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	529
BoxI	GACNNNNGTC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	522
BpmI	CTGGAG	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	641
Bpu14I	TTCGAA	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	147, 549, 682
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 488
Bse118I	RCCGGY	2 cut(s)	125, 164
Bse1I	ACTGG	1 cut(s)	524
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	3 cut(s)	147, 549, 682
BseGI	GGATG	3 cut(s)	64, 284, 742
BseLI	CCNNNNNNNGG	2 cut(s)	295, 488
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	3 cut(s)	61, 119, 632
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	5 cut(s)	41, 89, 141, 316, 526
BseYI	CCCAGC	1 cut(s)	205
BshFI	GGCC	3 cut(s)	23, 389, 750
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	4 cut(s)	126, 165, 375, 381
BslFI	GGGAC	2 cut(s)	332, 480
BslI	CCNNNNNNNGG	2 cut(s)	295, 488
BsmAI	GTCTC	1 cut(s)	654
BsmBI	CGTCTC	1 cut(s)	654
BsmFI	GGGAC	2 cut(s)	332, 480
BsnI	GGCC	3 cut(s)	23, 389, 750
BsoBI	CYCGRG	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	142, 383, 435
Bsp1720I	GCTNAGC	1 cut(s)	641
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	3 cut(s)	23, 389, 750
BspCNI	CTCAG	3 cut(s)	60, 118, 633
BspLI	GGNNCC	2 cut(s)	348, 379
BspPI	GGATC	2 cut(s)	137, 391
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	24
BsrFI	RCCGGY	2 cut(s)	125, 164
BsrI	ACTGG	1 cut(s)	524
BssAI	RCCGGY	2 cut(s)	125, 164
BssECI	CCNNGG	3 cut(s)	147, 549, 682
BssMI	GATC	3 cut(s)	142, 383, 435
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	73, 602, 787
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	127, 262
BstDEI	CTNAG	4 cut(s)	47, 105, 243, 641
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	3 cut(s)	64, 284, 742
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	3 cut(s)	145, 386, 438
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	3 cut(s)	142, 383, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 110
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	264
BstPAI	GACNNNNGTC	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	5 cut(s)	41, 89, 141, 316, 526
BstV2I	GAAGAC	1 cut(s)	522
BsuRI	GGCC	3 cut(s)	23, 389, 750
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	64, 284, 742
BtsIMutI	CAGTG	3 cut(s)	55, 501, 598
Cac8I	GCNNGC	2 cut(s)	127, 262
CfoI	GCGC	1 cut(s)	449
Cfr10I	RCCGGY	2 cut(s)	125, 164
Cfr13I	GGNCC	2 cut(s)	346, 491
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	370, 788
CviAII	CATG	2 cut(s)	261, 566
CviQI	GTAC	2 cut(s)	370, 788
DdeI	CTNAG	4 cut(s)	47, 105, 243, 641
DpnI	GATC	3 cut(s)	144, 385, 437
DpnII	GATC	3 cut(s)	142, 383, 435
DrdI	GACNNNNNNGTC	1 cut(s)	767
DseDI	GACNNNNNNGTC	1 cut(s)	767
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	346, 491
Eco47III	AGCGCT	1 cut(s)	448
Eco57I	CTGAAG	2 cut(s)	20, 434
Eco88I	CYCGRG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
Esp3I	CGTCTC	1 cut(s)	654
FaeI	CATG	2 cut(s)	264, 569
FaqI	GGGAC	2 cut(s)	332, 480
FatI	CATG	2 cut(s)	260, 565
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	5 cut(s)	30, 78, 130, 305, 540
FokI	GGATG	3 cut(s)	71, 271, 749
Fsp4HI	GCNGC	5 cut(s)	30, 78, 130, 305, 540
FspBI	CTAG	1 cut(s)	805
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	5 cut(s)	30, 78, 130, 305, 540
GsaI	CCCAGC	1 cut(s)	209
GsuI	CTGGAG	1 cut(s)	741
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	3 cut(s)	23, 389, 750
HapII	CCGG	4 cut(s)	126, 165, 375, 381
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	449
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	264, 569
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HinfI	GANTC	3 cut(s)	156, 269, 468
HpaII	CCGG	4 cut(s)	126, 165, 375, 381
HphI	GGTGA	5 cut(s)	230, 323, 445, 565, 682
Hpy166II	GTNNAC	2 cut(s)	221, 673
Hpy188I	TCNGA	5 cut(s)	39, 268, 414, 440, 686
Hpy188III	TCNNGA	4 cut(s)	181, 482, 584, 758
Hpy8I	GTNNAC	2 cut(s)	221, 673
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	49, 409, 550, 563
HpyCH4III	ACNGT	3 cut(s)	73, 602, 787
HpyCH4V	TGCA	7 cut(s)	29, 77, 260, 304, 338, 409, 594
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 110
HpyF3I	CTNAG	4 cut(s)	47, 105, 243, 641
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	264, 569
HspAI	GCGC	1 cut(s)	447
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	142, 383, 435
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	91, 244
Lsp1109I	GCAGC	5 cut(s)	41, 89, 141, 316, 526
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	1 cut(s)	805
MalI	GATC	3 cut(s)	144, 385, 437
MboI	GATC	3 cut(s)	142, 383, 435
MboII	GAAGA	2 cut(s)	26, 527
MluCI	AATT	4 cut(s)	176, 459, 528, 721
MlyI	GAGTC	1 cut(s)	462
MnlI	CCTC	6 cut(s)	10, 13, 307, 360, 604, 692
MroNI	GCCGGC	1 cut(s)	125
MseI	TTAA	3 cut(s)	174, 462, 689
MslI	CAYNNNNRTG	1 cut(s)	570
MspI	CCGG	4 cut(s)	126, 165, 375, 381
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	29, 110
NaeI	GCCGGC	1 cut(s)	127
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	3 cut(s)	142, 383, 435
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	2 cut(s)	264, 569
NlaIV	GGNNCC	2 cut(s)	348, 379
NspI	RCATGY	1 cut(s)	264
NspV	TTCGAA	1 cut(s)	83
PaeI	GCATGC	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	156, 269
PflFI	GACNNNGTC	2 cut(s)	521, 710
PflMI	CCANNNNNTGG	2 cut(s)	295, 488
PkrI	GCNGC	5 cut(s)	31, 79, 131, 306, 541
PleI	GAGTC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	462
PshAI	GACNNNNGTC	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	348, 379
PspPI	GGNCC	2 cut(s)	346, 491
PsyI	GACNNNGTC	2 cut(s)	521, 710
RsaI	GTAC	2 cut(s)	371, 789
RsaNI	GTAC	2 cut(s)	370, 788
RseI	CAYNNNNRTG	1 cut(s)	570
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	174, 462, 689
SatI	GCNGC	5 cut(s)	30, 78, 130, 305, 540
Sau3AI	GATC	3 cut(s)	142, 383, 435
Sau96I	GGNCC	2 cut(s)	346, 491
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	1 cut(s)	309
SfaNI	GCATC	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	83
SinI	GGWCC	2 cut(s)	346, 491
SmiMI	CAYNNNNRTG	1 cut(s)	570
SphI	GCATGC	1 cut(s)	264
Sse9I	AATT	4 cut(s)	176, 459, 528, 721
SsiI	CCGC	1 cut(s)	117
SspMI	CTAG	1 cut(s)	805
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	3 cut(s)	73, 602, 787
TaqI	TCGA	1 cut(s)	83
TasI	AATT	4 cut(s)	176, 459, 528, 721
TfiI	GAWTC	2 cut(s)	156, 269
Tru1I	TTAA	3 cut(s)	174, 462, 689
Tru9I	TTAA	3 cut(s)	174, 462, 689
TscAI	CASTG	3 cut(s)	55, 508, 605
TseI	GCWGC	5 cut(s)	29, 77, 129, 304, 539
TspDTI	ATGAA	5 cut(s)	160, 411, 499, 567, 582
TspGWI	ACGGA	1 cut(s)	757
TspRI	CASTG	3 cut(s)	55, 508, 605
Tth111I	GACNNNGTC	2 cut(s)	521, 710
Van91I	CCANNNNNTGG	2 cut(s)	295, 488
VpaK11BI	GGWCC	2 cut(s)	346, 491
XapI	RAATTY	2 cut(s)	176, 721
XceI	RCATGY	1 cut(s)	264
XspI	CTAG	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.