Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000548

Physical Location & Seq

Genomic Coordinates Reverse (-)

85598760 .. 85600864

Gene Structure 2105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53939

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCTGCGACTTCGATTATCAACACCGTTCGCCTCACCACCTCCGCCTCCACCTCTTCCGGCCTCTCTCCATCTTCTCAACCTAACTCATTCAACCCCAGGAAACCTACATTGTTGTGCGTTACGTCTTCCAGATCCCCCCCAAACCTCATTCAAAACAAGCCCGTTTTCACCGTTCCATCCCCTGTTCCGGCTGAAGATATGGGGAAGAACTACGAGGAGGCCATTGCAGCTCTTCAGAAACTACTCAGTGAGAAGGGTGACCTGAAAACAGTTGCAGCTTCGAAAGTGGAGCAGATTACTGCTCAGTTGGCAACAGCCGACGCCGGCACCAAACCCTTTGATCCCGTGGAGAGAATCAAAAGCGGCTTCATTAACTTCAAGAAAGAGAAATATGACACAAACCCAGCGCTATATGGTGAACTTGCCAAAGGTCAAGCCCCCAAGTTTATGTTGTTTGCATGCTCGGATTCCCGGGTTTGCCCATCCCACACTTTGGATATGCAGCCTGGTGAGGCTTTTGTGGTCCGTAATGTTGCAAATATGGTCCCTCCATTTGATAAGGTACCTACCCTTAAATCCACCACAAATTCAGTCTCATCACCCAATTTATTTCTCCCATTTCTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

210

Amino Acids

22.58

Weight (kDa)

9.13

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	151 - 187	4.9e-12	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca	FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica	MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica	Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis	pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis	RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata	RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora	Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii	Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa	Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha	Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana	Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	565
AccB1I	GGYRCC	2 cut(s)	329, 565
AccB7I	CCANNNNNTGG	1 cut(s)	496
AciI	CCGC	2 cut(s)	45, 366
AclWI	GGATC	2 cut(s)	129, 338
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	2 cut(s)	216, 221
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	1 cut(s)	567
AfeI	AGCGCT	1 cut(s)	411
AfiI	CCNNNNNNNGG	2 cut(s)	190, 496
AgsI	TTSAA	3 cut(s)	94, 155, 382
AjnI	CCWGG	2 cut(s)	98, 508
AluBI	AGCT	2 cut(s)	233, 281
AluI	AGCT	2 cut(s)	233, 281
Alw26I	GTCTC	1 cut(s)	601
AlwI	GGATC	2 cut(s)	129, 338
Ama87I	CYCGRG	1 cut(s)	474
Aor51HI	AGCGCT	1 cut(s)	411
AoxI	GGCC	2 cut(s)	61, 222
ApeKI	GCWGC	3 cut(s)	230, 278, 505
ApoI	RAATTY	1 cut(s)	589
Asp718I	GGTACC	1 cut(s)	565
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	2 cut(s)	526, 547
AsuC2I	CCSGG	2 cut(s)	475, 476
AsuHPI	GGTGA	6 cut(s)	28, 163, 272, 431, 524, 594
AsuII	TTCGAA	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	474
AvaII	GGWCC	2 cut(s)	526, 547
BanI	GGYRCC	2 cut(s)	329, 565
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	242, 290, 517
BccI	CCATC	3 cut(s)	79, 187, 493
BciT130I	CCWGG	2 cut(s)	100, 510
BcnI	CCSGG	2 cut(s)	475, 476
BcoDI	GTCTC	1 cut(s)	601
BfoI	RGCGCY	1 cut(s)	413
BisI	GCNGC	4 cut(s)	231, 279, 367, 506
BlsI	GCNGC	4 cut(s)	232, 280, 368, 507
Bme1390I	CCNGG	4 cut(s)	100, 475, 476, 510
Bme18I	GGWCC	2 cut(s)	526, 547
BmeT110I	CYCGRG	1 cut(s)	474
BmgT120I	GGNCC	2 cut(s)	526, 547
BmiI	GGNNCC	3 cut(s)	331, 549, 567
BmrFI	CCNGG	4 cut(s)	100, 475, 476, 510
BpiI	GAAGAC	1 cut(s)	120
Bpu14I	TTCGAA	1 cut(s)	284
BpuMI	CCSGG	2 cut(s)	475, 476
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	98, 348, 474
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 496
Bse118I	RCCGGY	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	100, 510
BseDI	CCNNGG	3 cut(s)	98, 348, 474
BseGI	GGATG	2 cut(s)	179, 485
BseLI	CCNNNNNNNGG	2 cut(s)	190, 496
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	262, 320
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	3 cut(s)	242, 290, 517
BseYI	CCCAGC	1 cut(s)	406
BshFI	GGCC	2 cut(s)	63, 224
BshNI	GGYRCC	2 cut(s)	329, 565
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	4 cut(s)	60, 191, 327, 475
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	190, 496
BsmAI	GTCTC	1 cut(s)	601
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	2 cut(s)	63, 224
BsoBI	CYCGRG	1 cut(s)	474
Bsp119I	TTCGAA	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	134, 343
BspACI	CCGC	2 cut(s)	45, 366
BspANI	GGCC	2 cut(s)	63, 224
BspCNI	CTCAG	2 cut(s)	261, 319
BspLI	GGNNCC	3 cut(s)	331, 549, 567
BspPI	GGATC	2 cut(s)	129, 338
BspQI	GCTCTTC	1 cut(s)	240
BspT104I	TTCGAA	1 cut(s)	284
BspT107I	GGYRCC	2 cut(s)	329, 565
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	3 cut(s)	98, 348, 474
BssMI	GATC	2 cut(s)	134, 343
BssNI	GRCGYC	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	100, 510
Bst4CI	ACNGT	3 cut(s)	28, 175, 274
Bst6I	CTCTTC	2 cut(s)	61, 240
BstACI	GRCGYC	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	328, 463
BstDEI	CTNAG	2 cut(s)	248, 306
BstDSI	CCRYGG	1 cut(s)	348
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	179, 485
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	2 cut(s)	137, 346
BstMAI	GTCTC	1 cut(s)	601
BstMBI	GATC	2 cut(s)	134, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 311
BstNI	CCWGG	2 cut(s)	100, 510
BstNSI	RCATGY	1 cut(s)	465
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	4 cut(s)	98, 473, 474, 508
BstV1I	GCAGC	3 cut(s)	242, 290, 517
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	63, 224
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	179, 485
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	328, 463
CfoI	GCGC	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	526, 547
Cfr9I	CCCGGG	1 cut(s)	474
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	1 cut(s)	462
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	2 cut(s)	248, 306
DpnI	GATC	2 cut(s)	136, 345
DpnII	GATC	2 cut(s)	134, 343
Eam1104I	CTCTTC	2 cut(s)	61, 240
EarI	CTCTTC	2 cut(s)	61, 240
EciI	GGCGGA	1 cut(s)	34
Eco47I	GGWCC	2 cut(s)	526, 547
Eco47III	AGCGCT	1 cut(s)	411
Eco57I	CTGAAG	2 cut(s)	216, 221
Eco88I	CYCGRG	1 cut(s)	474
Eco91I	GGTNACC	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	98, 508
FaeI	CATG	1 cut(s)	465
FaiI	YATR	8 cut(s)	203, 396, 415, 417, 452, 463, 503, 545
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	1 cut(s)	461
Fnu4HI	GCNGC	4 cut(s)	231, 279, 367, 506
FokI	GGATG	2 cut(s)	166, 472
Fsp4HI	GCNGC	4 cut(s)	231, 279, 367, 506
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	4 cut(s)	231, 279, 367, 506
GsaI	CCCAGC	1 cut(s)	410
HaeII	RGCGCY	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	63, 224
HapII	CCGG	4 cut(s)	60, 191, 327, 475
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	1 cut(s)	412
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	465
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HinfI	GANTC	2 cut(s)	357, 470
HpaII	CCGG	4 cut(s)	60, 191, 327, 475
HphI	GGTGA	6 cut(s)	28, 163, 272, 431, 524, 594
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	240, 469
Hpy188III	TCNNGA	2 cut(s)	132, 382
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	3 cut(s)	28, 175, 274
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	5 cut(s)	230, 278, 461, 505, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 311
HpyF3I	CTNAG	2 cut(s)	248, 306
HpySE526I	ACGT	1 cut(s)	125
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	465
HspAI	GCGC	1 cut(s)	410
KpnI	GGTACC	1 cut(s)	569
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	134, 343
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	3 cut(s)	242, 290, 517
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	121, 260
MalI	GATC	2 cut(s)	136, 345
MboI	GATC	2 cut(s)	134, 343
MboII	GAAGA	6 cut(s)	48, 66, 120, 209, 220, 227
MflI	RGATCY	1 cut(s)	134
MluCI	AATT	2 cut(s)	589, 607
MroNI	GCCGGC	1 cut(s)	326
MseI	TTAA	2 cut(s)	375, 576
MslI	CAYNNNNRTG	1 cut(s)	115
MspI	CCGG	4 cut(s)	60, 191, 327, 475
MspR9I	CCNGG	4 cut(s)	100, 475, 476, 510
MvaI	CCWGG	2 cut(s)	100, 510
MwoI	GCNNNNNNNGC	2 cut(s)	230, 311
NaeI	GCCGGC	1 cut(s)	328
NciI	CCSGG	2 cut(s)	475, 476
NdeII	GATC	2 cut(s)	134, 343
NgoMIV	GCCGGC	1 cut(s)	326
NlaIII	CATG	1 cut(s)	465
NlaIV	GGNNCC	3 cut(s)	331, 549, 567
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	465
NspV	TTCGAA	1 cut(s)	284
PaeI	GCATGC	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	357, 470
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	4 cut(s)	232, 280, 368, 507
Psp6I	CCWGG	2 cut(s)	98, 508
PspEI	GGTNACC	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	2 cut(s)	98, 508
PspN4I	GGNNCC	3 cut(s)	331, 549, 567
PspPI	GGNCC	2 cut(s)	526, 547
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
RseI	CAYNNNNRTG	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	375, 576
SatI	GCNGC	4 cut(s)	231, 279, 367, 506
Sau3AI	GATC	2 cut(s)	134, 343
Sau96I	GGNCC	2 cut(s)	526, 547
ScrFI	CCNGG	4 cut(s)	100, 475, 476, 510
SfuI	TTCGAA	1 cut(s)	284
SinI	GGWCC	2 cut(s)	526, 547
SmaI	CCCGGG	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	115
SphI	GCATGC	1 cut(s)	465
Sse9I	AATT	2 cut(s)	589, 607
SsiI	CCGC	2 cut(s)	45, 366
StyD4I	CCNGG	4 cut(s)	98, 473, 474, 508
TaaI	ACNGT	3 cut(s)	28, 175, 274
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	14, 284
TasI	AATT	2 cut(s)	589, 607
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	357, 470
Tru1I	TTAA	2 cut(s)	375, 576
Tru9I	TTAA	2 cut(s)	375, 576
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	3 cut(s)	230, 278, 505
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	361
TspGWI	ACGGA	1 cut(s)	518
TspMI	CCCGGG	1 cut(s)	474
TspRI	CASTG	1 cut(s)	256
Van91I	CCANNNNNTGG	1 cut(s)	496
VpaK11BI	GGWCC	2 cut(s)	526, 547
XapI	RAATTY	1 cut(s)	589
XceI	RCATGY	1 cut(s)	465
XmaI	CCCGGG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.