Rorug05G0360800

Reversible hydration of carbon dioxide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000548
Physical Location & Seq
Forward (+)
47582399 .. 47587090
4692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0360800.1

Sequence Viewer

Length: 912 bp
ATGAGAGGGGTTTGTACCTCTCTGAGGGAGAGATGTGTGACTGACCACCTTTGGGAGAAGCACATGAAAAAGAAATGGGGCAGAGTAATTGGCCCTGCTGCTTATAGGGAGTGGCAGTGGCAATCCATGGCCAATCAAAAGCAGAGCCCGAATCAGAATCAGCTGGCCAAGCCGCAAAAAGCAGCAGGCAAAGGCCTAATGAGAATTCTATCACTGTCTCTTTCTTGGCCTTTGTCGTGGATTAGATCCTCCAGCGACCATGATGAATTTATCAAAAGCAGGAGGAGGACTTGCTTCCCGTCTCATCAGCATGAGAATTCTGTCATGTCTTGGTACCTTGCTCTTGAGACCGGCAGGTTCTGGTTTCCTGCACAAGTCTATAACCGAGAGAATGGTCATGTTGGTTTTGTCTTGTCATGCTATGATGCTGAGCTTAGCTATGATCCCCGCACTGACACATTCCAAGCCAGATATCCACCACATGGAAGGAGAGCAGTTGCAGTTGAGAATTGTGTGCCCTGGGAAAGGCTTAGAGCACCACCTGTTGACACTTCGCCTCATGATCTTCATATCTCTGACTGTTTGAATGATTTGCGTCCTGGGGATCATATTGAGATTCAGTGGAGAAGAAATAAAGAATTTCCTTATGGTTGGTGGTATGGTGTTGTAGGTCACCTGGAATCATGTGATGGGAATGAGACTTACTGCCTTTGTCATAATAGTGACAATGTGGTGCTGGAGTTCAACCAGTACGCACGTGGTTCACGGTGGAGATGCACAACAATCAGCCGGAAAAACCATCGAGAAGAGGGAGACGAGGCAGATGGTTTCTACGGGGGAATCCGCAAGCTTTGCACCAAGGAAGAGATCTCCGTGTGGAAGTGTCTTTGGCCAACTCAAGTCCTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Pro_CA

Protein Analysis

303

Amino Acids

35.55

Weight (kDa)

8.56

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 345
Acc65I GGTACC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 333
AccB7I CCANNNNNTGG 1 cut(s) 482
AciI CCGC 3 cut(s) 173, 448, 844
AclWI GGATC 3 cut(s) 240, 437, 612
AcoI YGGCCR 3 cut(s) 129, 165, 890
AcsI RAATTY 4 cut(s) 204, 266, 316, 638
AcvI CACGTG 1 cut(s) 758
AfaI GTAC 3 cut(s) 16, 335, 752
AfiI CCNNNNNNNGG 4 cut(s) 24, 52, 482, 525
AgsI TTSAA 2 cut(s) 586, 745
AjnI CCWGG 4 cut(s) 518, 598, 675, 903
AluBI AGCT 4 cut(s) 163, 433, 438, 850
AluI AGCT 4 cut(s) 163, 433, 438, 850
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 5 cut(s) 222, 306, 341, 692, 807
AlwI GGATC 3 cut(s) 240, 437, 612
AlwNI CAGNNNCTG 1 cut(s) 360
AoxI GGCC 6 cut(s) 91, 129, 165, 193, 227, 890
ApeKI GCWGC 2 cut(s) 98, 182
ApoI RAATTY 4 cut(s) 204, 266, 316, 638
Asp718I GGTACC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 665
BaeGI GKGCMC 1 cut(s) 519
BalI TGGCCA 3 cut(s) 131, 167, 892
BanI GGYRCC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 149
BbrPI CACGTG 1 cut(s) 758
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 2 cut(s) 85, 194
BccI CCATC 3 cut(s) 683, 807, 818
BciT130I CCWGG 4 cut(s) 520, 600, 677, 905
BcoDI GTCTC 5 cut(s) 222, 306, 341, 692, 807
BfuAI ACCTGC 1 cut(s) 345
BglII AGATCT 1 cut(s) 867
BisI GCNGC 3 cut(s) 99, 173, 183
BlpI GCTNAGC 2 cut(s) 429, 434
BlsI GCNGC 3 cut(s) 100, 174, 184
Bme1390I CCNGG 4 cut(s) 520, 600, 677, 905
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 335
BmrFI CCNGG 4 cut(s) 520, 600, 677, 905
BmsI GCATC 2 cut(s) 415, 764
BpmI CTGGAG 2 cut(s) 235, 758
Bpu1102I GCTNAGC 2 cut(s) 429, 434
BpuEI CTTGAG 2 cut(s) 365, 882
BsaAI YACGTR 1 cut(s) 758
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 5 cut(s) 126, 518, 519, 599, 858
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 52, 482, 525
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 748
BseBI CCWGG 4 cut(s) 520, 600, 677, 905
BseDI CCNNGG 5 cut(s) 126, 518, 519, 599, 858
BseLI CCNNNNNNNGG 4 cut(s) 24, 52, 482, 525
BseMII CTCAG 2 cut(s) 14, 420
BseNI ACTGG 1 cut(s) 748
BseRI GAGGAG 1 cut(s) 298
BseSI GKGCMC 1 cut(s) 519
BseXI GCAGC 2 cut(s) 85, 194
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 6 cut(s) 93, 131, 167, 195, 229, 892
BshNI GGYRCC 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 538
BsiSI CCGG 2 cut(s) 351, 790
BslI CCNNNNNNNGG 4 cut(s) 24, 52, 482, 525
BsmAI GTCTC 5 cut(s) 222, 306, 341, 692, 807
BsmBI CGTCTC 2 cut(s) 306, 807
BsnI GGCC 6 cut(s) 93, 131, 167, 195, 229, 892
Bso31I GGTCTC 1 cut(s) 341
Bsp1286I GDGCHC 3 cut(s) 149, 519, 538
Bsp143I GATC 5 cut(s) 245, 442, 562, 604, 867
Bsp1720I GCTNAGC 2 cut(s) 429, 434
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 3 cut(s) 173, 448, 844
BspANI GGCC 6 cut(s) 93, 131, 167, 195, 229, 892
BspCNI CTCAG 2 cut(s) 15, 421
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 1 cut(s) 335
BspMI ACCTGC 1 cut(s) 345
BspPI GGATC 3 cut(s) 240, 437, 612
BspT107I GGYRCC 1 cut(s) 333
BspTNI GGTCTC 1 cut(s) 341
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 1 cut(s) 748
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 5 cut(s) 126, 518, 519, 599, 858
BssMI GATC 5 cut(s) 245, 442, 562, 604, 867
BssT1I CCWWGG 2 cut(s) 126, 858
Bst2UI CCWGG 4 cut(s) 520, 600, 677, 905
Bst4CI ACNGT 3 cut(s) 216, 581, 768
Bst6I CTCTTC 2 cut(s) 801, 858
BstAPI GCANNNNNTGC 1 cut(s) 852
BstBAI YACGTR 1 cut(s) 758
BstC8I GCNNGC 3 cut(s) 165, 187, 848
BstDEI CTNAG 4 cut(s) 23, 429, 434, 530
BstDSI CCRYGG 1 cut(s) 126
BstEII GGTNACC 1 cut(s) 671
BstENI CCTNNNNNAGG 2 cut(s) 22, 523
BstKTI GATC 5 cut(s) 248, 445, 565, 607, 870
BstMAI GTCTC 5 cut(s) 222, 306, 341, 692, 807
BstMBI GATC 5 cut(s) 245, 442, 562, 604, 867
BstMWI GCNNNNNNNGC 2 cut(s) 169, 852
BstNI CCWGG 4 cut(s) 520, 600, 677, 905
BstPI GGTNACC 1 cut(s) 671
BstSCI CCNGG 4 cut(s) 518, 598, 675, 903
BstSLI GKGCMC 1 cut(s) 519
BstV1I GCAGC 2 cut(s) 85, 194
BstX2I RGATCY 2 cut(s) 245, 867
BstYI RGATCY 2 cut(s) 245, 867
BsuRI GGCC 6 cut(s) 93, 131, 167, 195, 229, 892
BtgI CCRYGG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 4 cut(s) 122, 212, 450, 626
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 3 cut(s) 165, 187, 848
CaiI CAGNNNCTG 1 cut(s) 360
CciI TCATGA 1 cut(s) 559
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 92
CseI GACGC 1 cut(s) 584
Csp6I GTAC 3 cut(s) 15, 334, 751
CviQI GTAC 3 cut(s) 15, 334, 751
DdeI CTNAG 4 cut(s) 23, 429, 434, 530
DpnI GATC 5 cut(s) 247, 444, 564, 606, 869
DpnII GATC 5 cut(s) 245, 442, 562, 604, 867
EaeI YGGCCR 3 cut(s) 129, 165, 890
Eam1104I CTCTTC 2 cut(s) 801, 858
EarI CTCTTC 2 cut(s) 801, 858
Eco130I CCWWGG 2 cut(s) 126, 858
Eco147I AGGCCT 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 341
Eco32I GATATC 1 cut(s) 473
Eco72I CACGTG 1 cut(s) 758
Eco91I GGTNACC 1 cut(s) 671
EcoNI CCTNNNNNAGG 2 cut(s) 22, 523
EcoO65I GGTNACC 1 cut(s) 671
EcoRI GAATTC 2 cut(s) 204, 316
EcoRII CCWGG 4 cut(s) 518, 598, 675, 903
EcoRV GATATC 1 cut(s) 473
EcoT14I CCWWGG 2 cut(s) 126, 858
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 2 cut(s) 126, 858
Esp3I CGTCTC 2 cut(s) 306, 807
FauI CCCGC 1 cut(s) 455
Fnu4HI GCNGC 3 cut(s) 99, 173, 183
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 99, 173, 183
GluI GCNGC 3 cut(s) 99, 173, 183
GsuI CTGGAG 2 cut(s) 235, 758
HaeIII GGCC 6 cut(s) 93, 131, 167, 195, 229, 892
HapII CCGG 2 cut(s) 351, 790
HgaI GACGC 1 cut(s) 584
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 5 cut(s) 151, 157, 616, 680, 840
HpaII CCGG 2 cut(s) 351, 790
HphI GGTGA 1 cut(s) 665
Hpy166II GTNNAC 2 cut(s) 547, 764
Hpy188I TCNGA 3 cut(s) 24, 156, 577
Hpy188III TCNNGA 3 cut(s) 344, 560, 803
Hpy8I GTNNAC 2 cut(s) 547, 764
HpyAV CCTTC 1 cut(s) 480
HpyCH4III ACNGT 3 cut(s) 216, 581, 768
HpyCH4IV ACGT 1 cut(s) 757
HpyCH4V TGCA 4 cut(s) 371, 500, 777, 855
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 852
HpyF3I CTNAG 4 cut(s) 23, 429, 434, 530
HpySE526I ACGT 1 cut(s) 757
KpnI GGTACC 1 cut(s) 337
Kzo9I GATC 5 cut(s) 245, 442, 562, 604, 867
Lsp1109I GCAGC 2 cut(s) 85, 194
LweI GCATC 2 cut(s) 415, 764
MaeII ACGT 1 cut(s) 757
MaeIII GTNAC 3 cut(s) 37, 671, 722
MalI GATC 5 cut(s) 247, 444, 564, 606, 869
MboI GATC 5 cut(s) 245, 442, 562, 604, 867
MboII GAAGA 4 cut(s) 557, 639, 818, 875
MflI RGATCY 2 cut(s) 245, 867
MhlI GDGCHC 3 cut(s) 149, 519, 538
MlsI TGGCCA 3 cut(s) 131, 167, 892
MluCI AATT 6 cut(s) 87, 204, 266, 316, 508, 638
MluNI TGGCCA 3 cut(s) 131, 167, 892
MnlI CCTC 8 cut(s) 18, 28, 259, 276, 279, 567, 802, 811
Mox20I TGGCCA 3 cut(s) 131, 167, 892
MscI TGGCCA 3 cut(s) 131, 167, 892
MslI CAYNNNNRTG 2 cut(s) 309, 720
Msp20I TGGCCA 3 cut(s) 131, 167, 892
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 2 cut(s) 351, 790
MspR9I CCNGG 4 cut(s) 520, 600, 677, 905
MvaI CCWGG 4 cut(s) 520, 600, 677, 905
MwoI GCNNNNNNNGC 2 cut(s) 169, 852
NcoI CCATGG 1 cut(s) 126
NdeII GATC 5 cut(s) 245, 442, 562, 604, 867
NlaIV GGNNCC 1 cut(s) 335
NmuCI GTSAC 3 cut(s) 37, 671, 722
PagI TCATGA 1 cut(s) 559
PasI CCCWGGG 1 cut(s) 519
PceI AGGCCT 1 cut(s) 195
PfeI GAWTC 5 cut(s) 151, 157, 616, 680, 840
PflMI CCANNNNNTGG 1 cut(s) 482
PfoI TCCNGGA 1 cut(s) 903
PkrI GCNGC 3 cut(s) 100, 174, 184
PmaCI CACGTG 1 cut(s) 758
PmlI CACGTG 1 cut(s) 758
Ppu21I YACGTR 1 cut(s) 758
Psp6I CCWGG 4 cut(s) 518, 598, 675, 903
PspCI CACGTG 1 cut(s) 758
PspEI GGTNACC 1 cut(s) 671
PspGI CCWGG 4 cut(s) 518, 598, 675, 903
PspN4I GGNNCC 1 cut(s) 335
PspPI GGNCC 1 cut(s) 92
PstNI CAGNNNCTG 1 cut(s) 360
PsuI RGATCY 2 cut(s) 245, 867
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 3 cut(s) 16, 335, 752
RsaNI GTAC 3 cut(s) 15, 334, 751
RseI CAYNNNNRTG 2 cut(s) 309, 720
SatI GCNGC 3 cut(s) 99, 173, 183
Sau3AI GATC 5 cut(s) 245, 442, 562, 604, 867
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 4 cut(s) 520, 600, 677, 905
SduI GDGCHC 3 cut(s) 149, 519, 538
SfaNI GCATC 2 cut(s) 415, 764
SmiMI CAYNNNNRTG 2 cut(s) 309, 720
SmlI CTYRAG 2 cut(s) 344, 897
SmoI CTYRAG 2 cut(s) 344, 897
Sse9I AATT 6 cut(s) 87, 204, 266, 316, 508, 638
SseBI AGGCCT 1 cut(s) 195
SsiI CCGC 3 cut(s) 173, 448, 844
StuI AGGCCT 1 cut(s) 195
StyD4I CCNGG 4 cut(s) 518, 598, 675, 903
StyI CCWWGG 2 cut(s) 126, 858
TaaI ACNGT 3 cut(s) 216, 581, 768
TaiI ACGT 1 cut(s) 760
TaqI TCGA 1 cut(s) 802
TasI AATT 6 cut(s) 87, 204, 266, 316, 508, 638
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 5 cut(s) 151, 157, 616, 680, 840
TscAI CASTG 4 cut(s) 122, 219, 457, 626
TseFI GTSAC 3 cut(s) 37, 671, 722
TseI GCWGC 2 cut(s) 98, 182
Tsp45I GTSAC 3 cut(s) 37, 671, 722
TspDTI ATGAA 3 cut(s) 80, 279, 557
TspGWI ACGGA 1 cut(s) 862
TspRI CASTG 4 cut(s) 122, 219, 457, 626
Van91I CCANNNNNTGG 1 cut(s) 482
XagI CCTNNNNNAGG 2 cut(s) 22, 523
XapI RAATTY 4 cut(s) 204, 266, 316, 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.