Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000548

Physical Location & Seq

Genomic Coordinates Forward (+)

2983146 .. 2985945

Gene Structure 2800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGGAAGAACTACGAGGAGGCCATTGCAGCTCTTCAGAAATTACTCAGTGAGAAGGGTGACCTGAAAACAGTTGCAGCTTCGAAGGTGGAGCAGATTACTGCTCAGTTGGCAACAGCCGACGCCGGCACCAAACCCTTTGATCCCGATGTTTGTTTCTCCCGAATTCGCAGCACAAACCCAGCGCTATATGGTGAACTTGCCAAAGGTCAAGCCCCCAAGTTTATGTTGTTTGCATGCTCGGATTCCCGGGTTTGCCCATCCCACACTTTGGATATGCAGCCTGGTGAGGCTTTTGTGGTCCGTAATGTTGCAAATATGGTCCCTCCATTTGATAAGGTCAGGTACGCCGGAGTTGGGTCGGCCATTGAGTATGCTGTCTTGCATCTGAAGGTTTCATACATTGTGGTGATCGGGCACAGCGCTTGTGGTGGAATTAAGGGACTCCTGTCTTTTCCAGATGATGGACCAACTTCCACTGACTTCATAGAAGACTGGGTCAAAATTGGCCAAGCTGCCAAGAACAAGGTGAAGGCACTACATGAAGGTGCTTCCTTCCCTGAACTATGCACTCACTGTGAAAAGGAGGCTGTGAACGTTTCCATTGGAAATCTGCTGAGCTATCCTTTTGTAAGAGACGGGTTGGTGAACAAGACCCTCGGATTAAAGGGGGGCTACTATGATTTTGTCAAAGGAAACTTTGAGTTGTGGGATGTTGATTTTGGCCTTTCTCCCGACTTCTCCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

249

Amino Acids

26.89

Weight (kDa)

5.76

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	76 - 233	1.4e-40	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca	FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica	MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica	Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis	pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis	RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata	RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora	Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii	Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa	Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha	Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana	Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AccB7I	CCANNNNNTGG	2 cut(s)	271, 464
AclI	AACGTT	1 cut(s)	597
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	2 cut(s)	363, 508
AcsI	RAATTY	1 cut(s)	165
AcuI	CTGAAG	2 cut(s)	20, 410
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	347
AfeI	AGCGCT	2 cut(s)	186, 424
AfiI	CCNNNNNNNGG	3 cut(s)	271, 357, 464
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	4 cut(s)	32, 80, 515, 621
AluI	AGCT	4 cut(s)	32, 80, 515, 621
Alw26I	GTCTC	1 cut(s)	630
AlwI	GGATC	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	249
Aor51HI	AGCGCT	2 cut(s)	186, 424
AoxI	GGCC	4 cut(s)	21, 363, 508, 724
ApeKI	GCWGC	5 cut(s)	29, 77, 171, 280, 515
ApoI	RAATTY	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	187, 425
AspS9I	GGNCC	3 cut(s)	301, 322, 467
AsuC2I	CCSGG	2 cut(s)	250, 251
AsuHPI	GGTGA	6 cut(s)	71, 206, 299, 421, 541, 658
AsuII	TTCGAA	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	3 cut(s)	301, 322, 467
BaeGI	GKGCMC	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	510
BanI	GGYRCC	1 cut(s)	128
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
BbsI	GAAGAC	1 cut(s)	498
BbvI	GCAGC	5 cut(s)	41, 89, 183, 292, 502
BccI	CCATC	2 cut(s)	268, 458
BciT130I	CCWGG	1 cut(s)	285
BcnI	CCSGG	2 cut(s)	250, 251
BcoDI	GTCTC	1 cut(s)	630
BfoI	RGCGCY	2 cut(s)	188, 426
BisI	GCNGC	5 cut(s)	30, 78, 172, 281, 516
BlpI	GCTNAGC	1 cut(s)	617
BlsI	GCNGC	5 cut(s)	31, 79, 173, 282, 517
Bme1390I	CCNGG	3 cut(s)	250, 251, 285
Bme18I	GGWCC	3 cut(s)	301, 322, 467
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	3 cut(s)	301, 322, 467
BmiI	GGNNCC	2 cut(s)	130, 324
BmrFI	CCNGG	3 cut(s)	250, 251, 285
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	505
BoxI	GACNNNNGTC	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	498
Bpu1102I	GCTNAGC	1 cut(s)	617
Bpu14I	TTCGAA	1 cut(s)	83
BpuMI	CCSGG	2 cut(s)	250, 251
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	249, 658
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 357, 464
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	500
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	249, 658
BseGI	GGATG	2 cut(s)	260, 718
BseLI	CCNNNNNNNGG	3 cut(s)	271, 357, 464
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	3 cut(s)	61, 119, 608
BseNI	ACTGG	1 cut(s)	500
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	5 cut(s)	41, 89, 183, 292, 502
BseYI	CCCAGC	1 cut(s)	181
BshFI	GGCC	4 cut(s)	23, 365, 510, 726
BshNI	GGYRCC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	3 cut(s)	126, 250, 351
BslFI	GGGAC	2 cut(s)	308, 456
BslI	CCNNNNNNNGG	3 cut(s)	271, 357, 464
BsmAI	GTCTC	1 cut(s)	630
BsmBI	CGTCTC	1 cut(s)	630
BsmFI	GGGAC	2 cut(s)	308, 456
BsnI	GGCC	4 cut(s)	23, 365, 510, 726
BsoBI	CYCGRG	1 cut(s)	249
Bsp119I	TTCGAA	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	142, 411
Bsp1720I	GCTNAGC	1 cut(s)	617
BspANI	GGCC	4 cut(s)	23, 365, 510, 726
BspCNI	CTCAG	3 cut(s)	60, 118, 609
BspLI	GGNNCC	2 cut(s)	130, 324
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	249, 658
BssMI	GATC	2 cut(s)	142, 411
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	73, 578
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	127, 238
BstDEI	CTNAG	3 cut(s)	47, 105, 617
BstEII	GGTNACC	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	260, 718
BstH2I	RGCGCY	2 cut(s)	188, 426
BstHHI	GCGC	2 cut(s)	187, 425
BstKTI	GATC	2 cut(s)	145, 414
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	2 cut(s)	142, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 110
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	240
BstPAI	GACNNNNGTC	1 cut(s)	448
BstPI	GGTNACC	1 cut(s)	59
BstSCI	CCNGG	3 cut(s)	248, 249, 283
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	5 cut(s)	41, 89, 183, 292, 502
BstV2I	GAAGAC	1 cut(s)	498
BsuRI	GGCC	4 cut(s)	23, 365, 510, 726
BtsCI	GGATG	2 cut(s)	260, 718
BtsIMutI	CAGTG	3 cut(s)	55, 477, 574
Cac8I	GCNNGC	2 cut(s)	127, 238
CfoI	GCGC	2 cut(s)	187, 425
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	3 cut(s)	301, 322, 467
Cfr9I	CCCGGG	1 cut(s)	249
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	2 cut(s)	237, 542
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	3 cut(s)	47, 105, 617
DpnI	GATC	2 cut(s)	144, 413
DpnII	GATC	2 cut(s)	142, 411
EaeI	YGGCCR	2 cut(s)	363, 508
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco47I	GGWCC	3 cut(s)	301, 322, 467
Eco47III	AGCGCT	2 cut(s)	186, 424
Eco57I	CTGAAG	2 cut(s)	20, 410
Eco88I	CYCGRG	1 cut(s)	249
Eco91I	GGTNACC	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	283
Esp3I	CGTCTC	1 cut(s)	630
FaeI	CATG	2 cut(s)	240, 545
FaqI	GGGAC	2 cut(s)	308, 456
FatI	CATG	2 cut(s)	236, 541
Fnu4HI	GCNGC	5 cut(s)	30, 78, 172, 281, 516
FokI	GGATG	2 cut(s)	247, 725
Fsp4HI	GCNGC	5 cut(s)	30, 78, 172, 281, 516
GlaI	GCGC	2 cut(s)	186, 424
GluI	GCNGC	5 cut(s)	30, 78, 172, 281, 516
GsaI	CCCAGC	1 cut(s)	185
HaeII	RGCGCY	2 cut(s)	188, 426
HaeIII	GGCC	4 cut(s)	23, 365, 510, 726
HapII	CCGG	3 cut(s)	126, 250, 351
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	2 cut(s)	187, 425
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	240, 545
Hin6I	GCGC	2 cut(s)	185, 423
HinP1I	GCGC	2 cut(s)	185, 423
HinfI	GANTC	2 cut(s)	245, 444
HpaII	CCGG	3 cut(s)	126, 250, 351
HphI	GGTGA	6 cut(s)	71, 206, 299, 421, 541, 658
Hpy166II	GTNNAC	3 cut(s)	197, 595, 649
Hpy188I	TCNGA	4 cut(s)	39, 244, 390, 662
Hpy188III	TCNNGA	4 cut(s)	146, 162, 458, 734
Hpy8I	GTNNAC	3 cut(s)	197, 595, 649
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	6 cut(s)	49, 79, 385, 526, 539, 565
HpyCH4III	ACNGT	2 cut(s)	73, 578
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	7 cut(s)	29, 77, 236, 280, 314, 385, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 110
HpyF3I	CTNAG	3 cut(s)	47, 105, 617
HpySE526I	ACGT	1 cut(s)	597
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	240, 545
HspAI	GCGC	2 cut(s)	185, 423
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	142, 411
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	5 cut(s)	41, 89, 183, 292, 502
LweI	GCATC	1 cut(s)	394
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	2 cut(s)	144, 413
MboI	GATC	2 cut(s)	142, 411
MboII	GAAGA	3 cut(s)	19, 26, 503
MhlI	GDGCHC	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	4 cut(s)	41, 165, 435, 504
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	438
MnlI	CCTC	6 cut(s)	10, 13, 283, 336, 580, 668
Mox20I	TGGCCA	1 cut(s)	510
MroNI	GCCGGC	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	2 cut(s)	438, 665
MslI	CAYNNNNRTG	2 cut(s)	407, 546
Msp20I	TGGCCA	1 cut(s)	510
MspI	CCGG	3 cut(s)	126, 250, 351
MspR9I	CCNGG	3 cut(s)	250, 251, 285
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	29, 110
NaeI	GCCGGC	1 cut(s)	127
NciI	CCSGG	2 cut(s)	250, 251
NdeII	GATC	2 cut(s)	142, 411
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	2 cut(s)	240, 545
NlaIV	GGNNCC	2 cut(s)	130, 324
NmuCI	GTSAC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	240
NspV	TTCGAA	1 cut(s)	83
PaeI	GCATGC	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	245
PflFI	GACNNNGTC	1 cut(s)	497
PflMI	CCANNNNNTGG	2 cut(s)	271, 464
PkrI	GCNGC	5 cut(s)	31, 79, 173, 282, 517
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
PshAI	GACNNNNGTC	1 cut(s)	448
Psp1406I	AACGTT	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	283
PspEI	GGTNACC	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	130, 324
PspPI	GGNCC	3 cut(s)	301, 322, 467
PsyI	GACNNNGTC	1 cut(s)	497
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	2 cut(s)	407, 546
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	438, 665
SatI	GCNGC	5 cut(s)	30, 78, 172, 281, 516
Sau3AI	GATC	2 cut(s)	142, 411
Sau96I	GGNCC	3 cut(s)	301, 322, 467
SchI	GAGTC	1 cut(s)	438
ScrFI	CCNGG	3 cut(s)	250, 251, 285
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	1 cut(s)	394
SfuI	TTCGAA	1 cut(s)	83
SinI	GGWCC	3 cut(s)	301, 322, 467
SmaI	CCCGGG	1 cut(s)	251
SmiMI	CAYNNNNRTG	2 cut(s)	407, 546
SphI	GCATGC	1 cut(s)	240
Sse9I	AATT	4 cut(s)	41, 165, 435, 504
StyD4I	CCNGG	3 cut(s)	248, 249, 283
TaaI	ACNGT	2 cut(s)	73, 578
TaiI	ACGT	1 cut(s)	600
TaqI	TCGA	1 cut(s)	83
TasI	AATT	4 cut(s)	41, 165, 435, 504
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	438, 665
Tru9I	TTAA	2 cut(s)	438, 665
TscAI	CASTG	3 cut(s)	55, 484, 581
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	5 cut(s)	29, 77, 171, 280, 515
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	387, 475, 558
TspGWI	ACGGA	2 cut(s)	293, 733
TspMI	CCCGGG	1 cut(s)	249
TspRI	CASTG	3 cut(s)	55, 484, 581
Tth111I	GACNNNGTC	1 cut(s)	497
Van91I	CCANNNNNTGG	2 cut(s)	271, 464
VpaK11BI	GGWCC	3 cut(s)	301, 322, 467
XapI	RAATTY	1 cut(s)	165
XceI	RCATGY	1 cut(s)	240
XmaI	CCCGGG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.