Rh6CG217900

Reversible hydration of carbon dioxide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000548
Physical Location & Seq
Forward (+)
36199894 .. 36209352
9459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG217900.1

Sequence Viewer

Length: 1212 bp
ATGGCTGATGATGATTACAATGAGATGGATATTGGATATGAGGATGAGCCCGTGGAGCCAGAGATTGAAGAAGGGGCAGAGGAGGATGTGGATAACAATGATGATCTTGCTGGAGATGCCATTGAAACTGATGACAAGGAAGAACAAGTACCAGTGGAACGGCCTCGCAAAACATCAAAATTTATGACCAAATATGAACGGGCTAGAATCTTGGGTACCCGTGCTGTACAAATTAGCATGAATGCCCCTGTGATGGTTGAGTTGGAGGGTGAGACTGACCCGCTTGAGATTGCTATGAAGGAGCTTCGTGAGCGGAAGATACCCTTTACCATCCGCCGCTACTTGCCTGATGGAAGTTATGAAGATTGGGGAGTTGATGAACTGATTGTGGAAGATTCCTGGAAGAGGCAGTCCTTCGAGTTCAAAACAAAGAGAGTGGTAGACGAAATGGCTAGCCAGTTGGCAATTCATCGATTGAACAAGTTCCTCAGTGAGAAGGAGGACTTGGATGAAGTGGCTGCTGCCAAAATTGACAAACTAATTGCTGAGCTGCAAACGCCCGGTGATCATTTTGATCCGGTTCAAACGATTGTAAATGGGTTCATGGACTTCAAGATCCACAAATTCGACAAATATCCATGTCTGTTCGACAAGCTTGCCTTAGGACAAAGCCCCAAATTTCTGGTGTTCGCATGCTCAGACTCTCGAGTGAGCCCCTCTATTATCCTTAACTTTAAACCTGGGGAGGCCTTCATGGTTCGCAACATTGCTAACTTGGTTCCTACATTTAGCCAGCTAAGATACTCGGGAACTGGAGCAATTATAGAATATGCCGTCACACAACTCAAGGTAGAAAACATTTTGGTTATTGGGCATAGTAAATGTGGTGGGATACAGAGGCTTATGGAACATCCTGAAGATGGCAGTGTTCCCTTCGACTTCATAGATGACTGGGTTAAAATTGCCCAGGATGCCAAGGATAAAGTTAAAGCAGAGGGAGGAGGACATGAGGCTTGTGCTAGGGAAGCTGTAAATGTCTCTCTGGAAAACCTGCTAACTTATCCTTACGTTCATAAGGAGGTATCGGAAAGAAAAATAGCACTTAGAGGTGGTTACTATGACTTCGTCAATGGAGTTTTCGAGCTCTGGGAGAAACACGAATCTCACATTTCACCCCCCATGATCATTCCGCCTCCACAATTAAAGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00910 map00910
Pfam Domains
Protein Families
Pro_CA

Protein Analysis

403

Amino Acids

45.82

Weight (kDa)

4.74

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb6 PF01192 58 - 109 3.9e-11 RNA polymerase Rpb6
Pro_CA PF00484 228 - 378 1.7e-39 Carbonic anhydrase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1059
Acc65I GGTACC 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 441
AciI CCGC 5 cut(s) 281, 313, 334, 337, 1190
AclWI GGATC 2 cut(s) 569, 610
AcsI RAATTY 3 cut(s) 179, 623, 677
AcuI CTGAAG 1 cut(s) 936
AfaI GTAC 3 cut(s) 150, 217, 228
AfiI CCNNNNNNNGG 3 cut(s) 253, 405, 920
AgsI TTSAA 6 cut(s) 68, 125, 424, 478, 584, 613
AjiI CACGTC 1 cut(s) 1209
AjnI CCWGG 3 cut(s) 398, 739, 966
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 6 cut(s) 304, 550, 655, 796, 1028, 1144
AluI AGCT 6 cut(s) 304, 550, 655, 796, 1028, 1144
Alw21I GWGCWC 1 cut(s) 1146
Alw26I GTCTC 2 cut(s) 266, 1042
AlwI GGATC 2 cut(s) 569, 610
Ama87I CYCGRG 2 cut(s) 705, 805
AoxI GGCC 2 cut(s) 161, 747
ApeKI GCWGC 3 cut(s) 518, 521, 550
ApoI RAATTY 3 cut(s) 179, 623, 677
Asp700I GAANNNNTTC 1 cut(s) 482
Asp718I GGTACC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 561
AsuHPI GGTGA 3 cut(s) 281, 575, 1164
AsuNHI GCTAGC 1 cut(s) 452
AvaI CYCGRG 2 cut(s) 705, 805
AxyI CCTNAGG 1 cut(s) 661
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 3 cut(s) 51, 716, 1146
BarI GAAGNNNNNNTAC 2 cut(s) 132, 164
Bbv12I GWGCWC 1 cut(s) 1146
BbvI GCAGC 3 cut(s) 505, 508, 537
BccI CCATC 5 cut(s) 19, 247, 338, 344, 914
BceAI ACGGC 2 cut(s) 176, 818
BcgI CGANNNNNNTGC 2 cut(s) 638, 672
BciT130I CCWGG 3 cut(s) 400, 741, 968
BciVI GTATCC 1 cut(s) 885
BclI TGATCA 2 cut(s) 565, 1182
BcnI CCSGG 1 cut(s) 561
BcoDI GTCTC 2 cut(s) 266, 1042
BfaI CTAG 3 cut(s) 204, 453, 1020
BfuAI ACCTGC 1 cut(s) 1059
BfuI GTATCC 1 cut(s) 885
BisI GCNGC 4 cut(s) 337, 519, 522, 551
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 4 cut(s) 338, 520, 523, 552
Bme1390I CCNGG 4 cut(s) 400, 561, 741, 968
BmeT110I CYCGRG 2 cut(s) 705, 805
BmgBI CACGTC 1 cut(s) 1209
BmiI GGNNCC 3 cut(s) 57, 217, 780
BmrFI CCNGG 4 cut(s) 400, 561, 741, 968
BmrI ACTGGG 1 cut(s) 961
BmsI GCATC 2 cut(s) 106, 961
BmtI GCTAGC 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 961
BpmI CTGGAG 2 cut(s) 132, 834
Bpu1102I GCTNAGC 1 cut(s) 546
BpuEI CTTGAG 2 cut(s) 305, 830
BpuMI CCSGG 1 cut(s) 561
Bsa29I ATCGAT 1 cut(s) 472
BsaJI CCNNGG 4 cut(s) 51, 740, 966, 975
BsaWI WCCGGW 1 cut(s) 577
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 405, 920
Bse1I ACTGG 4 cut(s) 152, 457, 817, 956
Bse21I CCTNAGG 1 cut(s) 661
Bse3DI GCAATG 1 cut(s) 765
BseBI CCWGG 3 cut(s) 400, 741, 968
BseCI ATCGAT 1 cut(s) 472
BseDI CCNNGG 4 cut(s) 51, 740, 966, 975
BseGI GGATG 6 cut(s) 49, 91, 330, 514, 910, 976
BseLI CCNNNNNNNGG 3 cut(s) 253, 405, 920
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 3 cut(s) 502, 537, 711
BseNI ACTGG 4 cut(s) 152, 457, 817, 956
BseRI GAGGAG 2 cut(s) 95, 1014
BseXI GCAGC 3 cut(s) 505, 508, 537
BshFI GGCC 2 cut(s) 163, 749
BshNI GGYRCC 1 cut(s) 215
BshVI ATCGAT 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 1146
BsiHKCI CYCGRG 2 cut(s) 705, 805
BsiSI CCGG 2 cut(s) 561, 578
BslI CCNNNNNNNGG 3 cut(s) 253, 405, 920
BsmAI GTCTC 2 cut(s) 266, 1042
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 2 cut(s) 163, 749
BsoBI CYCGRG 2 cut(s) 705, 805
Bsp1286I GDGCHC 3 cut(s) 51, 716, 1146
Bsp1407I TGTACA 1 cut(s) 226
Bsp143I GATC 5 cut(s) 103, 565, 574, 615, 1182
Bsp1720I GCTNAGC 1 cut(s) 546
BspACI CCGC 5 cut(s) 281, 313, 334, 337, 1190
BspANI GGCC 2 cut(s) 163, 749
BspCNI CTCAG 3 cut(s) 501, 538, 710
BspDI ATCGAT 1 cut(s) 472
BspLI GGNNCC 3 cut(s) 57, 217, 780
BspMI ACCTGC 1 cut(s) 1059
BspOI GCTAGC 1 cut(s) 456
BspPI GGATC 2 cut(s) 569, 610
BspT107I GGYRCC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 765
BsrGI TGTACA 1 cut(s) 226
BsrI ACTGG 4 cut(s) 152, 457, 817, 956
BssECI CCNNGG 4 cut(s) 51, 740, 966, 975
BssMI GATC 5 cut(s) 103, 565, 574, 615, 1182
BssT1I CCWWGG 1 cut(s) 975
Bst2UI CCWGG 3 cut(s) 400, 741, 968
Bst6I CTCTTC 1 cut(s) 398
BstAUI TGTACA 1 cut(s) 226
BstC8I GCNNGC 4 cut(s) 454, 657, 694, 794
BstDEI CTNAG 6 cut(s) 488, 546, 661, 697, 797, 1103
BstDSI CCRYGG 1 cut(s) 51
BstENI CCTNNNNNAGG 1 cut(s) 403
BstF5I GGATG 6 cut(s) 49, 91, 330, 514, 910, 976
BstKTI GATC 5 cut(s) 106, 568, 577, 618, 1185
BstMAI GTCTC 2 cut(s) 266, 1042
BstMBI GATC 5 cut(s) 103, 565, 574, 615, 1182
BstMWI GCNNNNNNNGC 6 cut(s) 55, 116, 310, 556, 971, 1025
BstNI CCWGG 3 cut(s) 400, 741, 968
BstNSI RCATGY 1 cut(s) 696
BstSCI CCNGG 4 cut(s) 398, 559, 739, 966
BstV1I GCAGC 3 cut(s) 505, 508, 537
BstX2I RGATCY 1 cut(s) 615
BstXI CCANNNNNNTGG 1 cut(s) 682
BstYI RGATCY 1 cut(s) 615
Bsu15I ATCGAT 1 cut(s) 472
Bsu36I CCTNAGG 1 cut(s) 661
BsuI GTATCC 1 cut(s) 885
BsuRI GGCC 2 cut(s) 163, 749
BsuTUI ATCGAT 1 cut(s) 472
BtgI CCRYGG 1 cut(s) 51
BtrI CACGTC 1 cut(s) 1209
BtsCI GGATG 6 cut(s) 49, 91, 330, 514, 910, 976
BtsI GCAGTG 1 cut(s) 931
BtsIMutI CAGTG 3 cut(s) 159, 496, 931
BveI ACCTGC 1 cut(s) 1059
Cac8I GCNNGC 4 cut(s) 454, 657, 694, 794
ClaI ATCGAT 1 cut(s) 472
Csp6I GTAC 3 cut(s) 149, 216, 227
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviAII CATG 7 cut(s) 238, 604, 639, 693, 754, 1007, 1180
CviQI GTAC 3 cut(s) 149, 216, 227
DdeI CTNAG 6 cut(s) 488, 546, 661, 697, 797, 1103
DpnI GATC 5 cut(s) 105, 567, 576, 617, 1184
DpnII GATC 5 cut(s) 103, 565, 574, 615, 1182
DraI TTTAAA 1 cut(s) 736
Eam1104I CTCTTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 398
EciI GGCGGA 2 cut(s) 323, 1179
Ecl136II GAGCTC 1 cut(s) 1144
Eco130I CCWWGG 1 cut(s) 975
Eco147I AGGCCT 1 cut(s) 749
Eco24I GRGCYC 3 cut(s) 51, 716, 1146
Eco53kI GAGCTC 1 cut(s) 1144
Eco57I CTGAAG 1 cut(s) 936
Eco81I CCTNAGG 1 cut(s) 661
Eco88I CYCGRG 2 cut(s) 705, 805
EcoICRI GAGCTC 1 cut(s) 1144
EcoNI CCTNNNNNAGG 1 cut(s) 403
EcoRII CCWGG 3 cut(s) 398, 739, 966
EcoT14I CCWWGG 1 cut(s) 975
EcoT38I GRGCYC 3 cut(s) 51, 716, 1146
ErhI CCWWGG 1 cut(s) 975
FaeI CATG 7 cut(s) 241, 607, 642, 696, 757, 1010, 1183
FalI AAGNNNNNCTT 6 cut(s) 308, 340, 488, 520, 644, 676
FatI CATG 7 cut(s) 237, 603, 638, 692, 753, 1006, 1179
FauI CCCGC 1 cut(s) 288
FbaI TGATCA 2 cut(s) 565, 1182
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 4 cut(s) 337, 519, 522, 551
FokI GGATG 6 cut(s) 56, 98, 317, 521, 897, 983
FriOI GRGCYC 3 cut(s) 51, 716, 1146
Fsp4HI GCNGC 4 cut(s) 337, 519, 522, 551
FspBI CTAG 3 cut(s) 204, 453, 1020
GluI GCNGC 4 cut(s) 337, 519, 522, 551
GsuI CTGGAG 2 cut(s) 132, 834
HaeIII GGCC 2 cut(s) 163, 749
HapII CCGG 2 cut(s) 561, 578
Hin1II CATG 7 cut(s) 241, 607, 642, 696, 757, 1010, 1183
HindIII AAGCTT 1 cut(s) 653
HinfI GANTC 4 cut(s) 207, 395, 701, 1160
HpaII CCGG 2 cut(s) 561, 578
HphI GGTGA 3 cut(s) 281, 575, 1164
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 2 cut(s) 700, 1087
Hpy188III TCNNGA 6 cut(s) 308, 613, 705, 807, 914, 1043
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 6 cut(s) 65, 292, 424, 490, 760, 943
HpyCH4IV ACGT 2 cut(s) 1068, 1208
HpyCH4V TGCA 1 cut(s) 553
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 116, 310, 556, 971, 1025
HpyF3I CTNAG 6 cut(s) 488, 546, 661, 697, 797, 1103
HpySE526I ACGT 2 cut(s) 1068, 1208
Hsp92II CATG 7 cut(s) 241, 607, 642, 696, 757, 1010, 1183
KpnI GGTACC 1 cut(s) 219
Ksp22I TGATCA 2 cut(s) 565, 1182
Kzo9I GATC 5 cut(s) 103, 565, 574, 615, 1182
LmnI GCTCC 3 cut(s) 55, 301, 815
Lsp1109I GCAGC 3 cut(s) 505, 508, 537
LweI GCATC 2 cut(s) 106, 961
MaeI CTAG 3 cut(s) 204, 453, 1020
MaeII ACGT 2 cut(s) 1068, 1208
MaeIII GTNAC 2 cut(s) 835, 1112
MalI GATC 5 cut(s) 105, 567, 576, 617, 1184
MbiI CCGCTC 1 cut(s) 313
MboI GATC 5 cut(s) 103, 565, 574, 615, 1182
MboII GAAGA 7 cut(s) 80, 152, 328, 374, 404, 415, 929
MflI RGATCY 1 cut(s) 615
MhlI GDGCHC 3 cut(s) 51, 716, 1146
MlyI GAGTC 1 cut(s) 695
MmeI TCCRAC 1 cut(s) 243
MroXI GAANNNNTTC 1 cut(s) 482
MseI TTAA 5 cut(s) 729, 735, 957, 987, 1202
MspI CCGG 2 cut(s) 561, 578
MspR9I CCNGG 4 cut(s) 400, 561, 741, 968
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 3 cut(s) 400, 741, 968
MwoI GCNNNNNNNGC 6 cut(s) 55, 116, 310, 556, 971, 1025
NciI CCSGG 1 cut(s) 561
NdeII GATC 5 cut(s) 103, 565, 574, 615, 1182
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 7 cut(s) 241, 607, 642, 696, 757, 1010, 1183
NlaIV GGNNCC 3 cut(s) 57, 217, 780
NmuCI GTSAC 1 cut(s) 835
NspI RCATGY 1 cut(s) 696
PaeI GCATGC 1 cut(s) 696
PaeR7I CTCGAG 1 cut(s) 705
PceI AGGCCT 1 cut(s) 749
PctI GAATGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 482
PfeI GAWTC 3 cut(s) 207, 395, 1160
PflFI GACNNNGTC 1 cut(s) 1124
PfoI TCCNGGA 1 cut(s) 398
PkrI GCNGC 4 cut(s) 338, 520, 523, 552
PleI GAGTC 1 cut(s) 695
PpsI GAGTC 1 cut(s) 695
Psp124BI GAGCTC 1 cut(s) 1146
Psp6I CCWGG 3 cut(s) 398, 739, 966
PspGI CCWGG 3 cut(s) 398, 739, 966
PspN4I GGNNCC 3 cut(s) 57, 217, 780
PsuI RGATCY 1 cut(s) 615
PsyI GACNNNGTC 1 cut(s) 1124
RsaI GTAC 3 cut(s) 150, 217, 228
RsaNI GTAC 3 cut(s) 149, 216, 227
SacI GAGCTC 1 cut(s) 1146
SaqAI TTAA 5 cut(s) 729, 735, 957, 987, 1202
SatI GCNGC 4 cut(s) 337, 519, 522, 551
Sau3AI GATC 5 cut(s) 103, 565, 574, 615, 1182
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 4 cut(s) 400, 561, 741, 968
SduI GDGCHC 3 cut(s) 51, 716, 1146
SfaNI GCATC 2 cut(s) 106, 961
Sfr274I CTCGAG 1 cut(s) 705
SlaI CTCGAG 1 cut(s) 705
SmlI CTYRAG 3 cut(s) 284, 705, 845
SmoI CTYRAG 3 cut(s) 284, 705, 845
SphI GCATGC 1 cut(s) 696
SseBI AGGCCT 1 cut(s) 749
SsiI CCGC 5 cut(s) 281, 313, 334, 337, 1190
SspMI CTAG 3 cut(s) 204, 453, 1020
SstI GAGCTC 1 cut(s) 1146
StuI AGGCCT 1 cut(s) 749
StyD4I CCNGG 4 cut(s) 398, 559, 739, 966
StyI CCWWGG 1 cut(s) 975
TaiI ACGT 2 cut(s) 1071, 1211
TaqI TCGA 7 cut(s) 417, 472, 627, 648, 706, 936, 1140
TatI WGTACW 1 cut(s) 226
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 3 cut(s) 207, 395, 1160
Tru1I TTAA 5 cut(s) 729, 735, 957, 987, 1202
Tru9I TTAA 5 cut(s) 729, 735, 957, 987, 1202
TscAI CASTG 3 cut(s) 159, 496, 931
TseFI GTSAC 1 cut(s) 835
TseI GCWGC 3 cut(s) 518, 521, 550
Tsp45I GTSAC 1 cut(s) 835
TspRI CASTG 3 cut(s) 159, 496, 931
Tth111I GACNNNGTC 1 cut(s) 1124
XagI CCTNNNNNAGG 1 cut(s) 403
XapI RAATTY 3 cut(s) 179, 623, 677
XceI RCATGY 1 cut(s) 696
XhoI CTCGAG 1 cut(s) 705
XmiI GTMKAC 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 482
XspI CTAG 3 cut(s) 204, 453, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.