Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000252.1

Orthogroup ID

OG0000548

Physical Location & Seq

Genomic Coordinates Reverse (-)

245753 .. 248527

Gene Structure 2775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000252.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atgtctgcgacttcgattatcaacaccgttcgcctcaccacctccgcctccacctcttccggcctctctccatcttctcaacctaactcattcaaccccaggaaacctacattgttgcgcgttacgtcttccagatcccccccaaacctcattcaaaacaagcccgttttcaccgttccatcccctgttccggctgaagatatggggaagaactacgaggaggccattgcagctcttcagaaactactcagtgagaagggtgacctgaaaacagttgcagcttcgaaagtggagcagattactgctcagttggcaacagccgacgccggcaccaaaccctttgatcccgtggagagaatcaaaagcggcttcattaacttcaagaaagagaaatatgacacaaacccagcgctatatggtgaacttgccaaaggtcaagcccccaagcctggtgaggcttttgtggtccgtaatgttgcaaatatggtccctccatttgataaggtcaggtacgccggagttgggtcggccattgagtatgctgtcttgcatctgaaggtttcatacattgtggtgatcgggcacagcgcttgtggtggaattaagggactcctgtcttttccagatgatggaccaacttccactgacttcatagaagactgggtcaaaattggccaagctgccaagaacaaggtgaaggcactacatgaaggtgcttccttccctgaactatgcactcactgtgaaaaggaggctgtgaacgtttccattggaaatctgctgagctatccttttgtaagagacgggttggtgaacaagaccctcggattaaaggggggctactatgattttgtcaaaggaaactttgagttgtgggatgttattgattttggtctttctcccgacttctccgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

305

Amino Acids

32.8

Weight (kDa)

8.26

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01500 AT3G01500 AT3G01500 AT3G01500 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740 AT5G14740
fragaria_vesca	FvH4_2g14190 FvH4_3g35690 FvH4_3g35690 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780 FvH4_6g50780
malus_domestica	MD09G1032400.v1.1 MD10G1022000.v1.1 MD10G1022200.v1.1 MD10G1022400.v1.1 MD17G1034000.v1.1
prunus_persica	Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.3G285600_v2.0.a1 Prupe.6G080400_v2.0.a1 Prupe.8G025400_v2.0.a1
pyrus_communis	pycom10g01540 pycom111g02580 pycom17g03140
rosa_chinensis	RchiOBHm_Chr2g0172091 RchiOBHm_Chr2g0172171 RchiOBHm_Chr5g0063841 RchiOBHm_Chr5g0063851 RchiOBHm_Chr6g0276331
rosa_laevigata	RLG00000013403 RLG00000022084 RLG00000022089 RLG00000035683 RLG00000035684
rosa_multiflora	Rmu_co8246953.1_g000001 Rmu_sc0002765.1_g000009 Rmu_sc0002765.1_g000011 Rmu_sc0003665.1_g000009 Rmu_ssc0000252.1_g000041 Rmu_ssc0000252.1_g000047
rosa_roxburghii	Rroxscaffold_1G00016930 Rroxscaffold_2G00080110 Rroxscaffold_7G00192380
rosa_rugosa	Rorug02G0556500 Rorug02G0556600 Rorug02G0556700 Rorug02G0556800 Rorug05G0360800 Rorug06G0100000 Rorug06G0100000
rosa_samantha	Rh2AG632300 Rh2BG642200 Rh2BG645900 Rh2CG612500 Rh2DG653300 Rh2DG660500 Rh5AG418900 Rh5AG419000 Rh5BG435100 Rh5BG435200 Rh5CG458100 Rh5CG458200 Rh5DG447900 Rh5DG448000 Rh6AG211200 Rh6CG217900 Rh6DG208000
rosa_wichuraiana	Rw2G052340 Rw5G039370 Rw5G039380 Rw6G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	329
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	45, 366
AclI	AACGTT	1 cut(s)	762
AclWI	GGATC	2 cut(s)	129, 338
AcoI	YGGCCR	2 cut(s)	528, 673
AcuI	CTGAAG	3 cut(s)	216, 221, 575
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	1 cut(s)	512
AfeI	AGCGCT	2 cut(s)	411, 589
AfiI	CCNNNNNNNGG	4 cut(s)	190, 449, 522, 629
AgsI	TTSAA	3 cut(s)	94, 155, 382
AjnI	CCWGG	2 cut(s)	98, 448
AluBI	AGCT	4 cut(s)	233, 281, 680, 786
AluI	AGCT	4 cut(s)	233, 281, 680, 786
Alw26I	GTCTC	1 cut(s)	795
AlwI	GGATC	2 cut(s)	129, 338
Aor51HI	AGCGCT	2 cut(s)	411, 589
AoxI	GGCC	4 cut(s)	61, 222, 528, 673
ApeKI	GCWGC	3 cut(s)	230, 278, 680
AspLEI	GCGC	3 cut(s)	120, 412, 590
AspS9I	GGNCC	3 cut(s)	466, 487, 632
AsuHPI	GGTGA	8 cut(s)	28, 163, 272, 431, 464, 586, 706, 823
AsuII	TTCGAA	1 cut(s)	284
AvaII	GGWCC	3 cut(s)	466, 487, 632
BaeGI	GKGCMC	1 cut(s)	585
BalI	TGGCCA	1 cut(s)	675
BanI	GGYRCC	1 cut(s)	329
BarI	GAAGNNNNNNTAC	2 cut(s)	548, 580
BbsI	GAAGAC	2 cut(s)	120, 663
BbvI	GCAGC	3 cut(s)	242, 290, 667
BccI	CCATC	3 cut(s)	79, 187, 623
BciT130I	CCWGG	2 cut(s)	100, 450
BcoDI	GTCTC	1 cut(s)	795
BfoI	RGCGCY	2 cut(s)	413, 591
BisI	GCNGC	4 cut(s)	231, 279, 367, 681
BlpI	GCTNAGC	1 cut(s)	782
BlsI	GCNGC	4 cut(s)	232, 280, 368, 682
Bme1390I	CCNGG	2 cut(s)	100, 450
Bme18I	GGWCC	3 cut(s)	466, 487, 632
BmgT120I	GGNCC	3 cut(s)	466, 487, 632
BmiI	GGNNCC	2 cut(s)	331, 489
BmrFI	CCNGG	2 cut(s)	100, 450
BmrI	ACTGGG	1 cut(s)	670
BmsI	GCATC	1 cut(s)	559
BmuI	ACTGGG	1 cut(s)	670
BoxI	GACNNNNGTC	1 cut(s)	613
BpiI	GAAGAC	2 cut(s)	120, 663
Bpu1102I	GCTNAGC	1 cut(s)	782
Bpu14I	TTCGAA	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	98, 348, 823
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 449, 522, 629
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	665
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	100, 450
BseDI	CCNNGG	3 cut(s)	98, 348, 823
BseGI	GGATG	2 cut(s)	179, 883
BseLI	CCNNNNNNNGG	4 cut(s)	190, 449, 522, 629
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	3 cut(s)	262, 320, 773
BseNI	ACTGG	1 cut(s)	665
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	585
BseXI	GCAGC	3 cut(s)	242, 290, 667
BseYI	CCCAGC	1 cut(s)	406
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	4 cut(s)	63, 224, 530, 675
BshNI	GGYRCC	1 cut(s)	329
BsiSI	CCGG	4 cut(s)	60, 191, 327, 516
BslFI	GGGAC	2 cut(s)	473, 621
BslI	CCNNNNNNNGG	4 cut(s)	190, 449, 522, 629
BsmAI	GTCTC	1 cut(s)	795
BsmBI	CGTCTC	1 cut(s)	795
BsmFI	GGGAC	2 cut(s)	473, 621
BsnI	GGCC	4 cut(s)	63, 224, 530, 675
Bsp119I	TTCGAA	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	3 cut(s)	134, 343, 576
Bsp1720I	GCTNAGC	1 cut(s)	782
BspACI	CCGC	2 cut(s)	45, 366
BspANI	GGCC	4 cut(s)	63, 224, 530, 675
BspCNI	CTCAG	3 cut(s)	261, 319, 774
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	331, 489
BspPI	GGATC	2 cut(s)	129, 338
BspQI	GCTCTTC	1 cut(s)	240
BspT104I	TTCGAA	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	665
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	3 cut(s)	98, 348, 823
BssMI	GATC	3 cut(s)	134, 343, 576
BssNI	GRCGYC	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	100, 450
Bst4CI	ACNGT	4 cut(s)	28, 175, 274, 743
Bst6I	CTCTTC	2 cut(s)	61, 240
BstACI	GRCGYC	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	3 cut(s)	248, 306, 782
BstDSI	CCRYGG	1 cut(s)	348
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	179, 883
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	2 cut(s)	413, 591
BstHHI	GCGC	3 cut(s)	120, 412, 590
BstKTI	GATC	3 cut(s)	137, 346, 579
BstMAI	GTCTC	1 cut(s)	795
BstMBI	GATC	3 cut(s)	134, 343, 576
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 311
BstNI	CCWGG	2 cut(s)	100, 450
BstPAI	GACNNNNGTC	1 cut(s)	613
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	98, 448
BstSLI	GKGCMC	1 cut(s)	585
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	242, 290, 667
BstV2I	GAAGAC	2 cut(s)	120, 663
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	4 cut(s)	63, 224, 530, 675
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	179, 883
BtsIMutI	CAGTG	3 cut(s)	256, 642, 739
Cac8I	GCNNGC	1 cut(s)	328
CfoI	GCGC	3 cut(s)	120, 412, 590
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	466, 487, 632
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	1 cut(s)	707
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	3 cut(s)	248, 306, 782
DpnI	GATC	3 cut(s)	136, 345, 578
DpnII	GATC	3 cut(s)	134, 343, 576
EaeI	YGGCCR	2 cut(s)	528, 673
Eam1104I	CTCTTC	2 cut(s)	61, 240
EarI	CTCTTC	2 cut(s)	61, 240
EciI	GGCGGA	1 cut(s)	34
Eco47I	GGWCC	3 cut(s)	466, 487, 632
Eco47III	AGCGCT	2 cut(s)	411, 589
Eco57I	CTGAAG	3 cut(s)	216, 221, 575
Eco91I	GGTNACC	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	98, 448
Esp3I	CGTCTC	1 cut(s)	795
FaeI	CATG	1 cut(s)	710
FaqI	GGGAC	2 cut(s)	473, 621
FatI	CATG	1 cut(s)	706
Fnu4HI	GCNGC	4 cut(s)	231, 279, 367, 681
FokI	GGATG	2 cut(s)	166, 890
Fsp4HI	GCNGC	4 cut(s)	231, 279, 367, 681
GlaI	GCGC	3 cut(s)	119, 411, 589
GluI	GCNGC	4 cut(s)	231, 279, 367, 681
GsaI	CCCAGC	1 cut(s)	410
HaeII	RGCGCY	2 cut(s)	413, 591
HaeIII	GGCC	4 cut(s)	63, 224, 530, 675
HapII	CCGG	4 cut(s)	60, 191, 327, 516
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	3 cut(s)	120, 412, 590
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	710
Hin6I	GCGC	3 cut(s)	118, 410, 588
HinP1I	GCGC	3 cut(s)	118, 410, 588
HinfI	GANTC	2 cut(s)	357, 609
HpaII	CCGG	4 cut(s)	60, 191, 327, 516
HphI	GGTGA	8 cut(s)	28, 163, 272, 431, 464, 586, 706, 823
Hpy166II	GTNNAC	3 cut(s)	422, 760, 814
Hpy188I	TCNGA	3 cut(s)	240, 555, 827
Hpy188III	TCNNGA	4 cut(s)	132, 382, 623, 902
Hpy8I	GTNNAC	3 cut(s)	422, 760, 814
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	5 cut(s)	250, 550, 691, 704, 730
HpyCH4III	ACNGT	4 cut(s)	28, 175, 274, 743
HpyCH4IV	ACGT	2 cut(s)	125, 762
HpyCH4V	TGCA	5 cut(s)	230, 278, 479, 550, 735
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 311
HpyF3I	CTNAG	3 cut(s)	248, 306, 782
HpySE526I	ACGT	2 cut(s)	125, 762
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	710
HspAI	GCGC	3 cut(s)	118, 410, 588
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	134, 343, 576
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	3 cut(s)	242, 290, 667
LweI	GCATC	1 cut(s)	559
MaeII	ACGT	2 cut(s)	125, 762
MaeIII	GTNAC	2 cut(s)	121, 260
MalI	GATC	3 cut(s)	136, 345, 578
MboI	GATC	3 cut(s)	134, 343, 576
MboII	GAAGA	7 cut(s)	48, 66, 120, 209, 220, 227, 668
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	585
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	2 cut(s)	600, 669
MluNI	TGGCCA	1 cut(s)	675
MlyI	GAGTC	1 cut(s)	603
Mox20I	TGGCCA	1 cut(s)	675
MroNI	GCCGGC	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	3 cut(s)	375, 603, 830
MslI	CAYNNNNRTG	2 cut(s)	572, 711
Msp20I	TGGCCA	1 cut(s)	675
MspI	CCGG	4 cut(s)	60, 191, 327, 516
MspR9I	CCNGG	2 cut(s)	100, 450
MvaI	CCWGG	2 cut(s)	100, 450
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	230, 311
NaeI	GCCGGC	1 cut(s)	328
NdeII	GATC	3 cut(s)	134, 343, 576
NgoMIV	GCCGGC	1 cut(s)	326
NlaIII	CATG	1 cut(s)	710
NlaIV	GGNNCC	2 cut(s)	331, 489
NmuCI	GTSAC	1 cut(s)	260
NspV	TTCGAA	1 cut(s)	284
PciSI	GCTCTTC	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	357
PflFI	GACNNNGTC	1 cut(s)	662
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	4 cut(s)	232, 280, 368, 682
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
PshAI	GACNNNNGTC	1 cut(s)	613
Psp1406I	AACGTT	1 cut(s)	762
Psp6I	CCWGG	2 cut(s)	98, 448
PspEI	GGTNACC	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	2 cut(s)	98, 448
PspN4I	GGNNCC	2 cut(s)	331, 489
PspPI	GGNCC	3 cut(s)	466, 487, 632
PsuI	RGATCY	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	662
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	2 cut(s)	572, 711
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	375, 603, 830
SatI	GCNGC	4 cut(s)	231, 279, 367, 681
Sau3AI	GATC	3 cut(s)	134, 343, 576
Sau96I	GGNCC	3 cut(s)	466, 487, 632
SchI	GAGTC	1 cut(s)	603
ScrFI	CCNGG	2 cut(s)	100, 450
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	1 cut(s)	559
SfuI	TTCGAA	1 cut(s)	284
SinI	GGWCC	3 cut(s)	466, 487, 632
SmiMI	CAYNNNNRTG	2 cut(s)	572, 711
Sse9I	AATT	2 cut(s)	600, 669
SsiI	CCGC	2 cut(s)	45, 366
StyD4I	CCNGG	2 cut(s)	98, 448
TaaI	ACNGT	4 cut(s)	28, 175, 274, 743
TaiI	ACGT	2 cut(s)	128, 765
TaqI	TCGA	2 cut(s)	14, 284
TasI	AATT	2 cut(s)	600, 669
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	1 cut(s)	357
Tru1I	TTAA	3 cut(s)	375, 603, 830
Tru9I	TTAA	3 cut(s)	375, 603, 830
TscAI	CASTG	3 cut(s)	256, 649, 746
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	3 cut(s)	230, 278, 680
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	4 cut(s)	361, 552, 640, 723
TspGWI	ACGGA	2 cut(s)	458, 901
TspRI	CASTG	3 cut(s)	256, 649, 746
Tth111I	GACNNNGTC	1 cut(s)	662
Van91I	CCANNNNNTGG	1 cut(s)	629
VpaK11BI	GGWCC	3 cut(s)	466, 487, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.