Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

15644009 .. 15645688

Gene Structure 1680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTGGCGCAAAACAGTCGGCGGGAGCTTCTAGCAGCTTCCCTGATCCTAACTTTAGCTCTAATTCGTCTAACGGAAGCAAACTCCGAAGGGGACGCTCTTCACGCGCTTCGCCGGAGCTTATCAGATCCAGACAATGTTGTTCAGAGTTGGGATCCAACTCTTGTTAATCCTTGTACTTGGTTTCATGTCACTTGTAATCAACACCATCAAGTCACTCGTCTGGATTTGGGGAATTCAAACTTATCTGGACATCTAGTACCTGAACTTGGGAAGCTTGAACATTTACAATATCTTGAACTCTACAAAAACGAGATTCAAGGAACTATACCTTCTGAGCTTGGAAATCTGAAGAGTCTAATCAGTTTGGATCTGTACAACAACAATCTCACCGGGAAAATCCCATCTTCTTTGGGAAAATTGAAGTCACTTGTTTTTTTGCGGCTTAACGAAAACCGATTGACCGGTCCTATTCCTAGAGAACTCACAGTTATTTCAAGCCTTAAAGTTGTTGATGTCTCAGGGAATGATTTGTGTGGAACAATTCCAGTAGAAGGACCTTTTGAACACATTCCTATGCAAAACTTTGAGAACAACCTGAGATTGGAGGGACCAGAACTACTAGGTCTTGCGAGCTATGACACCAATTGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

218

Amino Acids

24.12

Weight (kDa)

5.46

Isoelectric Point (pI)

27.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	28 - 67	4.8e-11	Leucine rich repeat N-terminal domain
LRR_8	PF13855	133 - 184	9.9e-06	Leucine rich repeat
LRR_14	PF23598	138 - 203	1.2e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	107
AciI	CCGC	2 cut(s)	22, 442
AclWI	GGATC	5 cut(s)	40, 122, 149, 162, 378
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	3 cut(s)	178, 261, 377
AfiI	CCNNNNNNNGG	3 cut(s)	269, 554, 604
AgeI	ACCGGT	1 cut(s)	464
AgsI	TTSAA	7 cut(s)	240, 281, 299, 320, 424, 498, 566
AluBI	AGCT	7 cut(s)	28, 38, 59, 120, 277, 340, 636
AluI	AGCT	7 cut(s)	28, 38, 59, 120, 277, 340, 636
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	5 cut(s)	40, 122, 149, 162, 378
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	235
AsiGI	ACCGGT	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	570
AspLEI	GCGC	2 cut(s)	10, 109
AspS9I	GGNCC	3 cut(s)	467, 557, 611
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	1 cut(s)	382
AvaII	GGWCC	3 cut(s)	467, 557, 611
BamHI	GGATCC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	2 cut(s)	216, 412
BcgI	CGANNNNNNTGC	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	4 cut(s)	32, 257, 477, 623
BisI	GCNGC	2 cut(s)	36, 443
BlsI	GCNGC	2 cut(s)	37, 444
Bme1390I	CCNGG	1 cut(s)	394
Bme18I	GGWCC	3 cut(s)	467, 557, 611
BmgT120I	GGNCC	3 cut(s)	467, 557, 611
BmiI	GGNNCC	2 cut(s)	156, 612
BmrFI	CCNGG	1 cut(s)	394
BpuMI	CCSGG	1 cut(s)	394
BsaWI	WCCGGW	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 554, 604
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	548
BseLI	CCNNNNNNNGG	3 cut(s)	269, 554, 604
BseMII	CTCAG	3 cut(s)	327, 534, 590
BseNI	ACTGG	1 cut(s)	548
BseXI	GCAGC	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	107
BshTI	ACCGGT	1 cut(s)	464
BsiSI	CCGG	3 cut(s)	115, 393, 465
BslFI	GGGAC	2 cut(s)	107, 624
BslI	CCNNNNNNNGG	3 cut(s)	269, 554, 604
BsmAI	GTCTC	1 cut(s)	523
BsmFI	GGGAC	2 cut(s)	107, 624
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	45, 127, 154, 370
BspACI	CCGC	2 cut(s)	22, 442
BspCNI	CTCAG	3 cut(s)	328, 533, 591
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	156, 612
BspPI	GGATC	5 cut(s)	40, 122, 149, 162, 378
BspQI	GCTCTTC	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	464
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	548
BssAI	RCCGGY	1 cut(s)	464
BssMI	GATC	4 cut(s)	45, 127, 154, 370
Bst4CI	ACNGT	2 cut(s)	17, 490
Bst6I	CTCTTC	2 cut(s)	105, 347
BstAUI	TGTACA	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	634
BstDEI	CTNAG	3 cut(s)	336, 520, 599
BstFNI	CGCG	1 cut(s)	107
BstHHI	GCGC	2 cut(s)	10, 109
BstKTI	GATC	4 cut(s)	48, 130, 157, 373
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	4 cut(s)	45, 127, 154, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	392
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	47
BstX2I	RGATCY	3 cut(s)	127, 154, 370
BstYI	RGATCY	3 cut(s)	127, 154, 370
Cac8I	GCNNGC	1 cut(s)	634
CfoI	GCGC	2 cut(s)	10, 109
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	3 cut(s)	467, 557, 611
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	3 cut(s)	177, 260, 376
CspAI	ACCGGT	1 cut(s)	464
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	9 cut(s)	28, 38, 59, 120, 277, 340, 445, 501, 636
CviKI_1	RGCY	9 cut(s)	28, 38, 59, 120, 277, 340, 445, 501, 636
CviQI	GTAC	3 cut(s)	177, 260, 376
DdeI	CTNAG	3 cut(s)	336, 520, 599
DpnI	GATC	4 cut(s)	47, 129, 156, 372
DpnII	GATC	4 cut(s)	45, 127, 154, 370
Eam1104I	CTCTTC	2 cut(s)	105, 347
EarI	CTCTTC	2 cut(s)	105, 347
Eco47I	GGWCC	3 cut(s)	467, 557, 611
Eco57I	CTGAAG	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	235
FaeI	CATG	1 cut(s)	191
FaiI	YATR	4 cut(s)	189, 329, 578, 639
FaqI	GGGAC	2 cut(s)	107, 624
FatI	CATG	1 cut(s)	187
FauI	CCCGC	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	36, 443
Fsp4HI	GCNGC	2 cut(s)	36, 443
FspBI	CTAG	4 cut(s)	32, 257, 477, 623
GlaI	GCGC	2 cut(s)	9, 108
GluI	GCNGC	2 cut(s)	36, 443
HapII	CCGG	3 cut(s)	115, 393, 465
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	2 cut(s)	10, 109
Hin1II	CATG	1 cut(s)	191
Hin6I	GCGC	2 cut(s)	8, 107
HinP1I	GCGC	2 cut(s)	8, 107
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	2 cut(s)	316, 355
HpaII	CCGG	3 cut(s)	115, 393, 465
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	5 cut(s)	88, 127, 147, 337, 351
Hpy188III	TCNNGA	4 cut(s)	131, 224, 249, 296
HpyAV	CCTTC	3 cut(s)	83, 342, 548
HpyCH4III	ACNGT	2 cut(s)	17, 490
HpyCH4V	TGCA	2 cut(s)	580, 651
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	3 cut(s)	336, 520, 599
Hsp92II	CATG	1 cut(s)	191
HspAI	GCGC	2 cut(s)	8, 107
Kzo9I	GATC	4 cut(s)	45, 127, 154, 370
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	25, 117
Lsp1109I	GCAGC	1 cut(s)	47
MaeI	CTAG	4 cut(s)	32, 257, 477, 623
MaeIII	GTNAC	3 cut(s)	190, 214, 426
MalI	GATC	4 cut(s)	47, 129, 156, 372
MboI	GATC	4 cut(s)	45, 127, 154, 370
MboII	GAAGA	3 cut(s)	92, 364, 399
MfeI	CAATTG	1 cut(s)	646
MflI	RGATCY	3 cut(s)	127, 154, 370
MluCI	AATT	5 cut(s)	63, 235, 419, 543, 646
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	1 cut(s)	601
MroXI	GAANNNNTTC	1 cut(s)	570
MseI	TTAA	4 cut(s)	168, 447, 504, 655
MslI	CAYNNNNRTG	1 cut(s)	575
MspI	CCGG	3 cut(s)	115, 393, 465
MspR9I	CCNGG	1 cut(s)	394
MunI	CAATTG	1 cut(s)	646
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	104
NciI	CCSGG	1 cut(s)	394
NdeII	GATC	4 cut(s)	45, 127, 154, 370
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	2 cut(s)	156, 612
NmuCI	GTSAC	3 cut(s)	190, 214, 426
PciSI	GCTCTTC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	316
PinAI	ACCGGT	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	37, 444
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
PpuMI	RGGWCCY	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	557
PspN4I	GGNNCC	2 cut(s)	156, 612
PspPI	GGNCC	3 cut(s)	467, 557, 611
PspPPI	RGGWCCY	1 cut(s)	557
PsuI	RGATCY	3 cut(s)	127, 154, 370
RsaI	GTAC	3 cut(s)	178, 261, 377
RsaNI	GTAC	3 cut(s)	177, 260, 376
RseI	CAYNNNNRTG	1 cut(s)	575
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	4 cut(s)	168, 447, 504, 655
SatI	GCNGC	2 cut(s)	36, 443
Sau3AI	GATC	4 cut(s)	45, 127, 154, 370
Sau96I	GGNCC	3 cut(s)	467, 557, 611
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	394
SinI	GGWCC	3 cut(s)	467, 557, 611
SmiMI	CAYNNNNRTG	1 cut(s)	575
Sse9I	AATT	5 cut(s)	63, 235, 419, 543, 646
SsiI	CCGC	2 cut(s)	22, 442
SspMI	CTAG	4 cut(s)	32, 257, 477, 623
StyD4I	CCNGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	17, 490
TasI	AATT	5 cut(s)	63, 235, 419, 543, 646
TatI	WGTACW	2 cut(s)	176, 375
TauI	GCSGC	1 cut(s)	445
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	4 cut(s)	168, 447, 504, 655
Tru9I	TTAA	4 cut(s)	168, 447, 504, 655
TseFI	GTSAC	3 cut(s)	190, 214, 426
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	3 cut(s)	190, 214, 426
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	1 cut(s)	89
VpaK11BI	GGWCC	3 cut(s)	467, 557, 611
XapI	RAATTY	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	4 cut(s)	32, 257, 477, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.