Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

51514720 .. 51518345

Gene Structure 3626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG379000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTTCTCCGCGACCAAGGCCTCGCTGATTCTTCTACTCTTCGGCTTTCTTCAACTACTCGTTAAGGTCTCCGCCAACGTCGAAGGTGACGCATTGAATGCCTTGAAGAGCAGTTTGTCTGATCCTAACAATGTTCTCCAGAGTTGGGATCCTACTCTGGTCAATCCCTGCACGTGGTTGCATGTCACTTGCAACTCCGAAAACAGCGTCACCAGAGTTGATCTTGGCAATGCTAATCTCTCCGGTAACCTGGTTACGCAGCTCGGAGTGCTCACCAATTTACAGTACTTGGAACTTTATAGTAATAACATAAGCGGTAATATTCCAACAGAGCTTGGCGGTTTGAACAACCTGGTGAGCTTGGATCTTTACTTGAACAATTTAGATGGCCAAATTCCATCGACACTTGGCAACCTTGAAAAGCTGCGTTTCCTGCGTCTCAACAACAATACCTTGAGGGGGGAAATTCCCAGATCACTGACTAAGATTGCATCATTGCAAGTCCTGGATCTTTCAAACAACAATCTGACTGGAGATATTCCGGTCAATGGTTCCTTTTCACTCTTTACTCCCATCAGTTTTCAAAATAATCCTAATCTGAATGAACCTCCAGTCACTCCAACTCCTCCTGTTTCTCCAAGCCCAAGTCCTATTTCAGGAGATACTGTTGCTTTATGTACAATCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

229

Amino Acids

24.55

Weight (kDa)

4.59

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 65	1.5e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	74 - 173	1.4e-12	Leucine-rich repeat region
LRR_8	PF13855	117 - 176	1e-05	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AciI	CCGC	4 cut(s)	9, 72, 315, 339
AclWI	GGATC	5 cut(s)	116, 143, 156, 372, 516
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	393, 465
AcvI	CACGTG	1 cut(s)	174
AfaI	GTAC	2 cut(s)	287, 679
AfiI	CCNNNNNNNGG	5 cut(s)	145, 174, 459, 548, 656
AgsI	TTSAA	8 cut(s)	53, 97, 106, 346, 376, 419, 516, 584
AjnI	CCWGG	3 cut(s)	249, 351, 504
AjuI	GAANNNNNNNTTGG	2 cut(s)	637, 669
AluBI	AGCT	4 cut(s)	262, 334, 360, 424
AluI	AGCT	4 cut(s)	262, 334, 360, 424
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	73, 443
AlwI	GGATC	5 cut(s)	116, 143, 156, 372, 516
AoxI	GGCC	2 cut(s)	18, 388
ApeKI	GCWGC	2 cut(s)	259, 424
ApoI	RAATTY	2 cut(s)	393, 465
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AsuHPI	GGTGA	4 cut(s)	98, 202, 265, 367
BalI	TGGCCA	1 cut(s)	390
BamHI	GGATCC	1 cut(s)	148
BbrPI	CACGTG	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	271, 411
BccI	CCATC	3 cut(s)	380, 406, 581
BciT130I	CCWGG	3 cut(s)	251, 353, 506
BcoDI	GTCTC	2 cut(s)	73, 443
BisI	GCNGC	2 cut(s)	260, 425
BlsI	GCNGC	2 cut(s)	261, 426
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	3 cut(s)	251, 353, 506
BmiI	GGNNCC	2 cut(s)	150, 553
BmrFI	CCNGG	3 cut(s)	251, 353, 506
BmsI	GCATC	1 cut(s)	500
BpmI	CTGGAG	3 cut(s)	122, 552, 594
BpuEI	CTTGAG	1 cut(s)	475
BsaAI	YACGTR	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	2 cut(s)	242, 541
BsaXI	ACNNNNNCTCC	4 cut(s)	607, 637, 651, 681
Bsc4I	CCNNNNNNNGG	5 cut(s)	145, 174, 459, 548, 656
Bse1I	ACTGG	2 cut(s)	535, 611
Bse3DI	GCAATG	2 cut(s)	235, 494
BseBI	CCWGG	3 cut(s)	251, 353, 506
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	5 cut(s)	145, 174, 459, 548, 656
BseMI	GCAATG	2 cut(s)	235, 494
BseNI	ACTGG	2 cut(s)	535, 611
BseRI	GAGGAG	1 cut(s)	615
BseXI	GCAGC	2 cut(s)	271, 411
BsgI	GTGCAG	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	20, 390
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	243, 542
BslI	CCNNNNNNNGG	5 cut(s)	145, 174, 459, 548, 656
BsmAI	GTCTC	2 cut(s)	73, 443
BsmBI	CGTCTC	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	20, 390
Bso31I	GGTCTC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp1407I	TGTACA	1 cut(s)	677
Bsp143I	GATC	6 cut(s)	121, 148, 220, 364, 473, 508
BspACI	CCGC	4 cut(s)	9, 72, 315, 339
BspANI	GGCC	2 cut(s)	20, 390
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	2 cut(s)	150, 553
BspPI	GGATC	5 cut(s)	116, 143, 156, 372, 516
BspQI	GCTCTTC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	73
BsrDI	GCAATG	2 cut(s)	235, 494
BsrGI	TGTACA	1 cut(s)	677
BsrI	ACTGG	2 cut(s)	535, 611
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	6 cut(s)	121, 148, 220, 364, 473, 508
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	3 cut(s)	251, 353, 506
Bst4CI	ACNGT	2 cut(s)	285, 667
Bst6I	CTCTTC	2 cut(s)	44, 101
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	677
BstBAI	YACGTR	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	483
BstEII	GGTNACC	1 cut(s)	245
BstENI	CCTNNNNNAGG	1 cut(s)	654
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	6 cut(s)	124, 151, 223, 367, 476, 511
BstMAI	GTCTC	2 cut(s)	73, 443
BstMBI	GATC	6 cut(s)	121, 148, 220, 364, 473, 508
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 98, 268, 433
BstNI	CCWGG	3 cut(s)	251, 353, 506
BstNSI	RCATGY	1 cut(s)	185
BstPI	GGTNACC	1 cut(s)	245
BstSCI	CCNGG	3 cut(s)	249, 351, 504
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	271, 411
BstX2I	RGATCY	3 cut(s)	148, 364, 508
BstYI	RGATCY	3 cut(s)	148, 364, 508
BsuRI	GGCC	2 cut(s)	20, 390
BtsIMutI	CAGTG	1 cut(s)	476
CseI	GACGC	3 cut(s)	98, 196, 425
CsiI	ACCWGGT	2 cut(s)	249, 351
Csp6I	GTAC	2 cut(s)	286, 678
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	8 cut(s)	20, 45, 262, 334, 360, 390, 424, 642
CviKI_1	RGCY	8 cut(s)	20, 45, 262, 334, 360, 390, 424, 642
CviQI	GTAC	2 cut(s)	286, 678
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	6 cut(s)	123, 150, 222, 366, 475, 510
DpnII	GATC	6 cut(s)	121, 148, 220, 364, 473, 508
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	2 cut(s)	44, 101
EarI	CTCTTC	2 cut(s)	44, 101
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	15
Eco147I	AGGCCT	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	654
EcoO65I	GGTNACC	1 cut(s)	245
EcoRII	CCWGG	3 cut(s)	249, 351, 504
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	1 cut(s)	185
FaiI	YATR	4 cut(s)	183, 300, 311, 676
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	260, 425
Fsp4HI	GCNGC	2 cut(s)	260, 425
GluI	GCNGC	2 cut(s)	260, 425
GsuI	CTGGAG	3 cut(s)	122, 552, 594
HaeIII	GGCC	2 cut(s)	20, 390
HapII	CCGG	2 cut(s)	243, 542
HgaI	GACGC	3 cut(s)	98, 196, 425
Hin1II	CATG	1 cut(s)	185
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	2 cut(s)	243, 542
HphI	GGTGA	4 cut(s)	98, 202, 265, 367
Hpy188I	TCNGA	5 cut(s)	121, 199, 266, 528, 600
Hpy188III	TCNNGA	3 cut(s)	139, 657, 687
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	285, 667
HpyCH4IV	ACGT	2 cut(s)	78, 173
HpyCH4V	TGCA	5 cut(s)	171, 181, 192, 491, 499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 98, 268, 433
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	2 cut(s)	78, 173
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	6 cut(s)	121, 148, 220, 364, 473, 508
LguI	GCTCTTC	1 cut(s)	101
Lsp1109I	GCAGC	2 cut(s)	271, 411
LweI	GCATC	1 cut(s)	500
MabI	ACCWGGT	2 cut(s)	249, 351
MaeII	ACGT	2 cut(s)	78, 173
MaeIII	GTNAC	6 cut(s)	86, 184, 208, 245, 253, 613
MalI	GATC	6 cut(s)	123, 150, 222, 366, 475, 510
MboI	GATC	6 cut(s)	121, 148, 220, 364, 473, 508
MboII	GAAGA	4 cut(s)	23, 31, 41, 118
MflI	RGATCY	3 cut(s)	148, 364, 508
MhlI	GDGCHC	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	4 cut(s)	277, 379, 393, 465
MluNI	TGGCCA	1 cut(s)	390
MmeI	TCCRAC	2 cut(s)	350, 644
MnlI	CCTC	4 cut(s)	31, 450, 618, 636
Mox20I	TGGCCA	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	390
MseI	TTAA	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	390
MspI	CCGG	2 cut(s)	243, 542
MspR9I	CCNGG	3 cut(s)	251, 353, 506
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	3 cut(s)	251, 353, 506
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	17, 98, 268, 433
NdeII	GATC	6 cut(s)	121, 148, 220, 364, 473, 508
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	2 cut(s)	150, 553
NmuCI	GTSAC	4 cut(s)	86, 184, 208, 613
NspI	RCATGY	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	28
PfoI	TCCNGGA	1 cut(s)	504
PkrI	GCNGC	2 cut(s)	261, 426
PmaCI	CACGTG	1 cut(s)	174
PmlI	CACGTG	1 cut(s)	174
Ppu21I	YACGTR	1 cut(s)	174
Psp6I	CCWGG	3 cut(s)	249, 351, 504
PspCI	CACGTG	1 cut(s)	174
PspEI	GGTNACC	1 cut(s)	245
PspGI	CCWGG	3 cut(s)	249, 351, 504
PspN4I	GGNNCC	2 cut(s)	150, 553
PsuI	RGATCY	3 cut(s)	148, 364, 508
RsaI	GTAC	2 cut(s)	287, 679
RsaNI	GTAC	2 cut(s)	286, 678
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	260, 425
Sau3AI	GATC	6 cut(s)	121, 148, 220, 364, 473, 508
ScaI	AGTACT	1 cut(s)	287
ScrFI	CCNGG	3 cut(s)	251, 353, 506
SduI	GDGCHC	1 cut(s)	273
SexAI	ACCWGGT	2 cut(s)	249, 351
SfaNI	GCATC	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	4 cut(s)	277, 379, 393, 465
SseBI	AGGCCT	1 cut(s)	20
SsiI	CCGC	4 cut(s)	9, 72, 315, 339
SspI	AATATT	1 cut(s)	322
StuI	AGGCCT	1 cut(s)	20
StyD4I	CCNGG	3 cut(s)	249, 351, 504
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	285, 667
TaiI	ACGT	2 cut(s)	81, 176
TaqI	TCGA	2 cut(s)	81, 401
TasI	AATT	4 cut(s)	277, 379, 393, 465
TatI	WGTACW	2 cut(s)	285, 677
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	4 cut(s)	86, 184, 208, 613
TseI	GCWGC	2 cut(s)	259, 424
Tsp45I	GTSAC	4 cut(s)	86, 184, 208, 613
TspDTI	ATGAA	1 cut(s)	618
TspRI	CASTG	1 cut(s)	483
XagI	CCTNNNNNAGG	1 cut(s)	654
XapI	RAATTY	2 cut(s)	393, 465
XceI	RCATGY	1 cut(s)	185
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.