Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

19486408 .. 19486995

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G015690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAGGACGACCTGCTGGATACTATTGACTCTAACCCTAGGCGCAAGTCTTATTCCTGGAGCACACCCTCTTTCAGAGACAGAAGCTTTGAATGCGTTTAAGAAGAACTTAACCGATCCATGCAGTTGGTCACACATCGTCTGCAATCAAGACAAAAAAGTCACTGGAGTGTTCTTAATTAACAGCCAGCTTTCTGGACATCTGGTACCTGAACTTGGATCGCTTTCGGCTCTCGAGCGGCTGATTCTTCCTCAGAATGACATCTCAGGAACAATTCCATCTGAGCTTGGTAACCTGAAGACACTCCAGACTCTCATATTAGGTTATAATAGATTATCGGGCAGCATTCCTCCTACACTGGGTAATTTGCAATCACTTCGTACCTTGGGTCTCGATCATAACGAATTGAGTGGGAAAATCCCTTCCGGAATTGCAACCATTAAAAGCCTCCAAATTTTTTCGCCGACACCAATATATAAAGGCAGTTACCCATTATGCCAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8

Protein Analysis

169

Amino Acids

18.23

Weight (kDa)

8.96

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	63 - 158	6.8e-10	Leucine-rich repeat region
LRR_8	PF13855	77 - 136	7.6e-08	Leucine rich repeat
LRR_4	PF12799	101 - 137	6.4e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AasI	GACNNNNNNGTC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	20
Acc65I	GGTACC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	205
AccBSI	CCGCTC	1 cut(s)	238
AccIII	TCCGGA	1 cut(s)	425
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	2 cut(s)	110, 226
AcsI	RAATTY	1 cut(s)	453
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	2 cut(s)	207, 382
AfiI	CCNNNNNNNGG	2 cut(s)	215, 359
AgsI	TTSAA	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	3 cut(s)	86, 190, 286
AluI	AGCT	3 cut(s)	86, 190, 286
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	71, 395
AlwI	GGATC	2 cut(s)	110, 226
Ama87I	CYCGRG	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	425
ApeKI	GCWGC	1 cut(s)	342
ApoI	RAATTY	1 cut(s)	453
ArsI	GACNNNNNNTTYG	2 cut(s)	70, 102
Asp718I	GGTACC	1 cut(s)	205
AspA2I	CCTAGG	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	233
AvrII	CCTAGG	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	1 cut(s)	286
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	71, 395
BfaI	CTAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	20
BfuI	GTATCC	1 cut(s)	12
BisI	GCNGC	2 cut(s)	239, 343
BlnI	CCTAGG	1 cut(s)	37
BlsI	GCNGC	2 cut(s)	240, 344
Bme1390I	CCNGG	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	368
BmuI	ACTGGG	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	305
BpmI	CTGGAG	3 cut(s)	78, 186, 290
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	37, 384
BsaWI	WCCGGW	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 359
Bse1I	ACTGG	2 cut(s)	169, 363
BseAI	TCCGGA	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	37, 384
BseLI	CCNNNNNNNGG	2 cut(s)	215, 359
BseMII	CTCAG	3 cut(s)	266, 273, 279
BseNI	ACTGG	2 cut(s)	169, 363
BseXI	GCAGC	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	426
BslI	CCNNNNNNNGG	2 cut(s)	215, 359
BsmAI	GTCTC	2 cut(s)	71, 395
BsmI	GAATGC	2 cut(s)	97, 345
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	425
Bsp143I	GATC	3 cut(s)	115, 218, 394
BspACI	CCGC	1 cut(s)	238
BspCNI	CTCAG	3 cut(s)	265, 274, 278
BspEI	TCCGGA	1 cut(s)	425
BspLI	GGNNCC	1 cut(s)	207
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	2 cut(s)	110, 226
BspT107I	GGYRCC	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	169, 363
BssECI	CCNNGG	2 cut(s)	37, 384
BssMI	GATC	3 cut(s)	115, 218, 394
BssT1I	CCWWGG	2 cut(s)	37, 384
Bst2UI	CCWGG	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	3 cut(s)	252, 265, 282
BstEII	GGTNACC	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	3 cut(s)	118, 221, 397
BstMAI	GTCTC	2 cut(s)	71, 395
BstMBI	GATC	3 cut(s)	115, 218, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	57
BstPI	GGTNACC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	354
BstV2I	GAAGAC	1 cut(s)	305
BstXI	CCANNNNNNTGG	2 cut(s)	126, 194
BsuI	GTATCC	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	162, 356
BveI	ACCTGC	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	188
CfoI	GCGC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	206, 381
CviAII	CATG	1 cut(s)	120
CviJI	RGCY	7 cut(s)	86, 186, 190, 230, 241, 286, 447
CviKI_1	RGCY	7 cut(s)	86, 186, 190, 230, 241, 286, 447
CviQI	GTAC	2 cut(s)	206, 381
DdeI	CTNAG	3 cut(s)	252, 265, 282
DpnI	GATC	3 cut(s)	117, 220, 396
DpnII	GATC	3 cut(s)	115, 218, 394
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	37, 384
Eco31I	GGTCTC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	290
EcoO65I	GGTNACC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	37, 384
ErhI	CCWWGG	2 cut(s)	37, 384
FaeI	CATG	1 cut(s)	123
FaiI	YATR	7 cut(s)	121, 317, 327, 399, 475, 477, 496
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	1 cut(s)	119
Fnu4HI	GCNGC	2 cut(s)	239, 343
Fsp4HI	GCNGC	2 cut(s)	239, 343
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	2 cut(s)	239, 343
GsuI	CTGGAG	3 cut(s)	78, 186, 290
HapII	CCGG	1 cut(s)	426
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	123
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	3 cut(s)	28, 244, 310
HpaII	CCGG	1 cut(s)	426
Hpy188I	TCNGA	3 cut(s)	76, 255, 283
Hpy188III	TCNNGA	7 cut(s)	149, 195, 233, 267, 307, 392, 426
HpyAV	CCTTC	1 cut(s)	432
HpyCH4V	TGCA	4 cut(s)	123, 144, 370, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	3 cut(s)	252, 265, 282
Hsp92II	CATG	1 cut(s)	123
HspAI	GCGC	1 cut(s)	42
Kpn2I	TCCGGA	1 cut(s)	425
KpnI	GGTACC	1 cut(s)	209
Kzo9I	GATC	3 cut(s)	115, 218, 394
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	1 cut(s)	354
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	4 cut(s)	129, 160, 290, 485
MalI	GATC	3 cut(s)	117, 220, 396
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	3 cut(s)	115, 218, 394
MboII	GAAGA	3 cut(s)	115, 239, 310
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	6 cut(s)	177, 273, 364, 404, 429, 453
MlyI	GAGTC	2 cut(s)	22, 304
MnlI	CCTC	4 cut(s)	78, 261, 360, 458
MroI	TCCGGA	1 cut(s)	425
MseI	TTAA	5 cut(s)	99, 110, 176, 180, 441
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	2 cut(s)	97, 345
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	3 cut(s)	115, 218, 394
NlaIII	CATG	1 cut(s)	123
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	129, 160
OliI	CACNNNNGTG	1 cut(s)	167
PacI	TTAATTAA	1 cut(s)	180
PaeR7I	CTCGAG	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PctI	GAATGC	2 cut(s)	97, 345
PfeI	GAWTC	1 cut(s)	244
PfoI	TCCNGGA	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	240, 344
PleI	GAGTC	2 cut(s)	22, 304
PpsI	GAGTC	2 cut(s)	22, 304
PsiI	TTATAA	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	207
RsaI	GTAC	2 cut(s)	207, 382
RsaNI	GTAC	2 cut(s)	206, 381
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	5 cut(s)	99, 110, 176, 180, 441
SatI	GCNGC	2 cut(s)	239, 343
Sau3AI	GATC	3 cut(s)	115, 218, 394
SchI	GAGTC	2 cut(s)	22, 304
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	8 cut(s)	14, 88, 192, 211, 288, 297, 325, 386
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	6 cut(s)	177, 273, 364, 404, 429, 453
SsiI	CCGC	1 cut(s)	238
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	37, 384
TaqI	TCGA	2 cut(s)	234, 393
TasI	AATT	6 cut(s)	177, 273, 364, 404, 429, 453
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	5 cut(s)	99, 110, 176, 180, 441
Tru9I	TTAA	5 cut(s)	99, 110, 176, 180, 441
TscAI	CASTG	2 cut(s)	169, 363
TseFI	GTSAC	2 cut(s)	129, 160
TseI	GCWGC	1 cut(s)	342
Tsp45I	GTSAC	2 cut(s)	129, 160
TspRI	CASTG	2 cut(s)	169, 363
XapI	RAATTY	1 cut(s)	453
XhoI	CTCGAG	1 cut(s)	233
XmaJI	CCTAGG	1 cut(s)	37
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.