Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

13504600 .. 13508836

Gene Structure 4237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G154900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCCATGGCGGCGGCCTGCTGTTTGTTGACCCTAACCCTAACCGTGAGCTTCGTTCCCTTGGTCTATGGAAACTCTGAAGGAGACGCTCTGTACACGCTCAGGCGGAGCTTATCGGATCCCGATAACGTGCTTCAGAGCTGGGATCCCACCCTTGTCAACCCCTGCACTTGGTTTCACATCACCTGCAACCAGGACAATCGCGTTACCCGAGTGGACCTGGGTAATTCAAACCTCTCTGGACATTTGGTACCTGAACTAGGAAAGCTCGAGCATCTTCAATATCTGGAGCTTTACAAAAATAACATTCAAGGAACTATTCCAGCTGACCTTGGTAACTTGAAGAGCCTCGTTAGCTTGGACTTATATAACAACAACATATCAGGGACCATTCCTTCTTCATTGGGGAAATTGAAATCACTTGTGTTTTTACGTCTCAATGATAACAAGTTAACTGGACCAATCCCGCGGGATCTTGTTGGTATTTCAAGCCTCAAAGTTGTGGATGTATCCAACAATGATTTATGTGGAACAATTCCTACCAGTGGACCATTTGAGCACATCCCTTTAAACAACTTTGAGAATAACCATCGACTCGAAGGTCCAGAGTTGTTGGGGCTTGCAACTTATGACACAAACTGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

216

Amino Acids

23.51

Weight (kDa)

5.09

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
AasI	GACNNNNNNGTC	1 cut(s)	600
Acc36I	ACCTGC	1 cut(s)	194
Acc65I	GGTACC	1 cut(s)	250
AccB1I	GGYRCC	1 cut(s)	250
AccII	CGCG	2 cut(s)	204, 469
AciI	CCGC	5 cut(s)	11, 14, 106, 467, 469
AclWI	GGATC	5 cut(s)	113, 126, 140, 153, 480
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	99, 119
AfaI	GTAC	2 cut(s)	95, 252
AfiI	CCNNNNNNNGG	3 cut(s)	171, 260, 545
AgsI	TTSAA	6 cut(s)	231, 281, 311, 343, 415, 489
AjnI	CCWGG	2 cut(s)	192, 219
AluBI	AGCT	7 cut(s)	51, 111, 141, 268, 292, 326, 357
AluI	AGCT	7 cut(s)	51, 111, 141, 268, 292, 326, 357
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	2 cut(s)	78, 440
AlwI	GGATC	5 cut(s)	113, 126, 140, 153, 480
Ama87I	CYCGRG	2 cut(s)	210, 269
AoxI	GGCC	2 cut(s)	3, 15
Asp718I	GGTACC	1 cut(s)	250
AspS9I	GGNCC	5 cut(s)	217, 387, 458, 548, 602
AsuHPI	GGTGA	1 cut(s)	175
AvaI	CYCGRG	2 cut(s)	210, 269
AvaII	GGWCC	5 cut(s)	217, 387, 458, 548, 602
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	118, 145
BanI	GGYRCC	1 cut(s)	250
BauI	CACGAG	1 cut(s)	643
Bbv12I	GWGCWC	1 cut(s)	561
BccI	CCATC	1 cut(s)	597
BciT130I	CCWGG	2 cut(s)	194, 221
BciVI	GTATCC	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	78, 440
BfaI	CTAG	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	194
BfuI	GTATCC	1 cut(s)	520
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	2 cut(s)	12, 15
BlsI	GCNGC	2 cut(s)	13, 16
Bme1390I	CCNGG	2 cut(s)	194, 221
Bme18I	GGWCC	5 cut(s)	217, 387, 458, 548, 602
BmeT110I	CYCGRG	2 cut(s)	210, 269
BmgT120I	GGNCC	5 cut(s)	217, 387, 458, 548, 602
BmiI	GGNNCC	4 cut(s)	120, 147, 252, 388
BmrFI	CCNGG	2 cut(s)	194, 221
BmsI	GCATC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	101
BsaJI	CCNNGG	5 cut(s)	6, 60, 220, 331, 467
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 260, 545
Bse1I	ACTGG	2 cut(s)	460, 543
BseBI	CCWGG	2 cut(s)	194, 221
BseDI	CCNNGG	5 cut(s)	6, 60, 220, 331, 467
BseGI	GGATG	2 cut(s)	511, 561
BseLI	CCNNNNNNNGG	3 cut(s)	171, 260, 545
BseMII	CTCAG	1 cut(s)	115
BseNI	ACTGG	2 cut(s)	460, 543
BseYI	CCCAGC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	204, 469
BshFI	GGCC	2 cut(s)	5, 17
BshNI	GGYRCC	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	2 cut(s)	210, 269
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	3 cut(s)	171, 260, 545
BsmAI	GTCTC	2 cut(s)	78, 440
BsmBI	CGTCTC	2 cut(s)	78, 440
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	5, 17
BsoBI	CYCGRG	2 cut(s)	210, 269
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	118, 145, 472
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	5 cut(s)	11, 14, 106, 467, 469
BspANI	GGCC	2 cut(s)	5, 17
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	2 cut(s)	204, 469
BspLI	GGNNCC	4 cut(s)	120, 147, 252, 388
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	5 cut(s)	113, 126, 140, 153, 480
BspQI	GCTCTTC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	250
BsrGI	TGTACA	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	460, 543
BssECI	CCNNGG	5 cut(s)	6, 60, 220, 331, 467
BssMI	GATC	3 cut(s)	118, 145, 472
BssSI	CACGAG	1 cut(s)	643
BssT1I	CCWWGG	3 cut(s)	6, 60, 331
Bst2BI	CACGAG	1 cut(s)	643
Bst2UI	CCWGG	2 cut(s)	194, 221
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	1 cut(s)	338
BstAUI	TGTACA	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	19, 621
BstDEI	CTNAG	1 cut(s)	101
BstDSI	CCRYGG	2 cut(s)	6, 467
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	511, 561
BstFNI	CGCG	2 cut(s)	204, 469
BstKTI	GATC	3 cut(s)	121, 148, 475
BstMAI	GTCTC	2 cut(s)	78, 440
BstMBI	GATC	3 cut(s)	118, 145, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 354
BstNI	CCWGG	2 cut(s)	194, 221
BstSCI	CCNGG	2 cut(s)	192, 219
BstUI	CGCG	2 cut(s)	204, 469
BstX2I	RGATCY	3 cut(s)	118, 145, 472
BstYI	RGATCY	3 cut(s)	118, 145, 472
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	5, 17
BtgI	CCRYGG	2 cut(s)	6, 467
BtsCI	GGATG	2 cut(s)	511, 561
BtsIMutI	CAGTG	1 cut(s)	550
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	19, 621
Cfr13I	GGNCC	5 cut(s)	217, 387, 458, 548, 602
Cfr42I	CCGCGG	1 cut(s)	470
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	94, 251
CviAII	CATG	1 cut(s)	7
CviQI	GTAC	2 cut(s)	94, 251
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	3 cut(s)	120, 147, 474
DpnII	GATC	3 cut(s)	118, 145, 472
DraI	TTTAAA	1 cut(s)	570
DrdI	GACNNNNNNGTC	1 cut(s)	600
DseDI	GACNNNNNNGTC	1 cut(s)	600
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	1 cut(s)	121
Eco130I	CCWWGG	3 cut(s)	6, 60, 331
Eco47I	GGWCC	5 cut(s)	217, 387, 458, 548, 602
Eco57I	CTGAAG	2 cut(s)	99, 119
Eco88I	CYCGRG	2 cut(s)	210, 269
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	192, 219
EcoT14I	CCWWGG	3 cut(s)	6, 60, 331
ErhI	CCWWGG	3 cut(s)	6, 60, 331
Esp3I	CGTCTC	2 cut(s)	78, 440
FaeI	CATG	1 cut(s)	10
FaiI	YATR	7 cut(s)	8, 69, 367, 369, 380, 526, 630
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	1 cut(s)	6
FauI	CCCGC	2 cut(s)	462, 474
Fnu4HI	GCNGC	2 cut(s)	12, 15
FokI	GGATG	2 cut(s)	518, 548
Fsp4HI	GCNGC	2 cut(s)	12, 15
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	2 cut(s)	12, 15
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	5, 17
HgaI	GACGC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	10
HincII	GTYRAC	3 cut(s)	30, 160, 453
HindII	GTYRAC	3 cut(s)	30, 160, 453
HinfI	GANTC	1 cut(s)	594
HpaI	GTTAAC	1 cut(s)	453
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	6 cut(s)	30, 96, 160, 217, 453, 548
Hpy188I	TCNGA	3 cut(s)	79, 118, 138
Hpy188III	TCNNGA	5 cut(s)	122, 240, 287, 605, 645
Hpy8I	GTNNAC	6 cut(s)	30, 96, 160, 217, 453, 548
HpyAV	CCTTC	3 cut(s)	74, 405, 593
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	2 cut(s)	129, 433
HpyCH4V	TGCA	3 cut(s)	168, 189, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 354
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	2 cut(s)	129, 433
Hsp92II	CATG	1 cut(s)	10
KpnI	GGTACC	1 cut(s)	254
KspAI	GTTAAC	1 cut(s)	453
KspI	CCGCGG	1 cut(s)	470
Kzo9I	GATC	3 cut(s)	118, 145, 472
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	2 cut(s)	108, 289
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	2 cut(s)	129, 433
MaeIII	GTNAC	2 cut(s)	205, 335
MalI	GATC	3 cut(s)	120, 147, 474
MboI	GATC	3 cut(s)	118, 145, 472
MboII	GAAGA	3 cut(s)	269, 355, 390
MflI	RGATCY	3 cut(s)	118, 145, 472
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	226, 410, 534
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	588
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	3 cut(s)	245, 359, 503
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	452, 569
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	326, 469
MspR9I	CCNGG	2 cut(s)	194, 221
MvaI	CCWGG	2 cut(s)	194, 221
MvnI	CGCG	2 cut(s)	204, 469
MwoI	GCNNNNNNNGC	2 cut(s)	11, 354
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	118, 145, 472
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	4 cut(s)	120, 147, 252, 388
PaeR7I	CTCGAG	1 cut(s)	269
PaqCI	CACCTGC	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	13, 16
PleI	GAGTC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	588
Psp6I	CCWGG	2 cut(s)	192, 219
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	2 cut(s)	192, 219
PspN4I	GGNNCC	4 cut(s)	120, 147, 252, 388
PspPI	GGNCC	5 cut(s)	217, 387, 458, 548, 602
PspXI	VCTCGAGB	1 cut(s)	269
PsrI	GAACNNNNNNTAC	2 cut(s)	523, 555
PsuI	RGATCY	3 cut(s)	118, 145, 472
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	95, 252
RsaNI	GTAC	2 cut(s)	94, 251
SacII	CCGCGG	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	452, 569
SatI	GCNGC	2 cut(s)	12, 15
Sau3AI	GATC	3 cut(s)	118, 145, 472
Sau96I	GGNCC	5 cut(s)	217, 387, 458, 548, 602
SchI	GAGTC	1 cut(s)	588
ScrFI	CCNGG	2 cut(s)	194, 221
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	1 cut(s)	283
Sfr274I	CTCGAG	1 cut(s)	269
Sfr303I	CCGCGG	1 cut(s)	470
SgrBI	CCGCGG	1 cut(s)	470
SinI	GGWCC	5 cut(s)	217, 387, 458, 548, 602
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	226, 410, 534
SsiI	CCGC	5 cut(s)	11, 14, 106, 467, 469
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	192, 219
StyI	CCWWGG	3 cut(s)	6, 60, 331
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	2 cut(s)	132, 436
TaqI	TCGA	3 cut(s)	270, 592, 597
TasI	AATT	3 cut(s)	226, 410, 534
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	2 cut(s)	14, 17
Tru1I	TTAA	2 cut(s)	452, 569
Tru9I	TTAA	2 cut(s)	452, 569
TscAI	CASTG	1 cut(s)	550
TspDTI	ATGAA	1 cut(s)	390
TspRI	CASTG	1 cut(s)	550
VpaK11BI	GGWCC	5 cut(s)	217, 387, 458, 548, 602
XagI	CCTNNNNNAGG	1 cut(s)	258
XhoI	CTCGAG	1 cut(s)	269
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.