Rh5AG328600

Somatic embryogenesis receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001737
Physical Location & Seq
Forward (+)
49889771 .. 49895287
5517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG328600.1

Sequence Viewer

Length: 651 bp
ATGGCGGCGAGGTTTTGGTTGTTGAGCCTAACCCTAAGTGTAAGCGTGGTTGGGTTGGTGCGCGGTAACTCGGAATCAGACGCTTTGTACACGCTGAGGAAGAGCTTATCGGATCCCGATAACGTGCTGCAGAGCTGGGATCCCACGCTCGTCAACCCCTGCACTTGGTTCCACATCACCTGCAACCAGGACAATCGCGTTACCCGACTGGATTTAGGTAATTCAAACCTCTCTGGACATCTGGTACCTGAACTTGGAAAACTTGAGCATCTTCAATATCTGGAGCTATACAGAAATAATATTCAGGGAACTATTCCAGCTGAGCTTGGTAACCTGAAGAGCCTCGTTAGCTTGGACTTATATAACAACAACATATCAGGGACAATTCCTCCTTCATTGGGGAAATTGAAATCACTTGTGTTCTTACGTCTCAATGACAACAGGTTAAGTGGGCCAATCCCCAGGGATCTCGTTGGTCTTGCAAGCCTCAAAGTTGTGGATGTATCGAGCAATGATTTGTGCGGAACAATTCCTACCAGTGGACCATTTGAGCACATTCCTTTGAGCAAGTACGTTCTTTCTGTTGTTTGCCATGTTGCTCCTTTATCTAAGTTTACCTCACTATTTGATAAAGAATGGCTTCTCCCATAA

Protein Analysis

216

Amino Acids

23.82

Weight (kDa)

6.5

Isoelectric Point (pI)

27.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 23 - 62 1.6e-11 Leucine rich repeat N-terminal domain
LRR_8 PF13855 66 - 125 7.9e-07 Leucine rich repeat
LRR_14 PF23598 70 - 168 7.6e-15 Leucine-rich repeat region
LRR_4 PF12799 90 - 130 3.2e-06 Leucine Rich repeats (2 copies)
LRR_4 PF12799 113 - 149 5.3e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 115 - 173 3.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 188
Acc65I GGTACC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 244
AccII CGCG 2 cut(s) 63, 198
AciI CCGC 3 cut(s) 5, 63, 522
AclWI GGATC 5 cut(s) 107, 120, 134, 147, 474
AcuI CTGAAG 1 cut(s) 356
AfaI GTAC 3 cut(s) 89, 246, 572
AfiI CCNNNNNNNGG 4 cut(s) 165, 254, 398, 539
AgsI TTSAA 3 cut(s) 225, 275, 409
AjnI CCWGG 2 cut(s) 186, 461
AluBI AGCT 6 cut(s) 105, 135, 286, 320, 325, 351
AluI AGCT 6 cut(s) 105, 135, 286, 320, 325, 351
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 5 cut(s) 107, 120, 134, 147, 474
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 639
Asp718I GGTACC 1 cut(s) 244
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 452, 542
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 542
BamHI GGATCC 2 cut(s) 112, 139
BanI GGYRCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 555
BbvCI CCTCAGC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 114
BciT130I CCWGG 2 cut(s) 188, 463
BcoDI GTCTC 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 128
BfuAI ACCTGC 1 cut(s) 188
BisI GCNGC 2 cut(s) 6, 128
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 2 cut(s) 7, 129
Bme1390I CCNGG 2 cut(s) 188, 463
Bme18I GGWCC 1 cut(s) 542
BmgT120I GGNCC 2 cut(s) 452, 542
BmiI GGNNCC 4 cut(s) 114, 141, 170, 246
BmrFI CCNGG 2 cut(s) 188, 463
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 302
Bpu10I CCTNAGC 1 cut(s) 95
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 461, 462
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 4 cut(s) 165, 254, 398, 539
Bse1I ACTGG 2 cut(s) 213, 537
Bse3DI GCAATG 1 cut(s) 517
BseBI CCWGG 2 cut(s) 188, 463
BseDI CCNNGG 2 cut(s) 461, 462
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 4 cut(s) 165, 254, 398, 539
BseMI GCAATG 1 cut(s) 517
BseMII CTCAG 2 cut(s) 86, 312
BseNI ACTGG 2 cut(s) 213, 537
BseXI GCAGC 1 cut(s) 114
BseYI CCCAGC 1 cut(s) 135
BsgI GTGCAG 1 cut(s) 145
Bsh1236I CGCG 2 cut(s) 63, 198
BshFI GGCC 1 cut(s) 454
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 555
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 4 cut(s) 165, 254, 398, 539
BsmAI GTCTC 1 cut(s) 434
BsmBI CGTCTC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 555
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 3 cut(s) 112, 139, 466
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 3 cut(s) 5, 63, 522
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 2 cut(s) 87, 313
BspFNI CGCG 2 cut(s) 63, 198
BspLI GGNNCC 4 cut(s) 114, 141, 170, 246
BspMAI CTGCAG 1 cut(s) 132
BspMI ACCTGC 1 cut(s) 188
BspPI GGATC 5 cut(s) 107, 120, 134, 147, 474
BspQI GCTCTTC 2 cut(s) 95, 332
BspT107I GGYRCC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 517
BsrGI TGTACA 1 cut(s) 87
BsrI ACTGG 2 cut(s) 213, 537
BssECI CCNNGG 2 cut(s) 461, 462
BssMI GATC 3 cut(s) 112, 139, 466
Bst2UI CCWGG 2 cut(s) 188, 463
Bst6I CTCTTC 2 cut(s) 95, 332
BstAUI TGTACA 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 484
BstDEI CTNAG 4 cut(s) 35, 95, 321, 609
BstEII GGTNACC 1 cut(s) 329
BstF5I GGATG 1 cut(s) 505
BstFNI CGCG 2 cut(s) 63, 198
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 3 cut(s) 115, 142, 469
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 3 cut(s) 112, 139, 466
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstNI CCWGG 2 cut(s) 188, 463
BstPI GGTNACC 1 cut(s) 329
BstSCI CCNGG 2 cut(s) 186, 461
BstSFI CTRYAG 1 cut(s) 128
BstUI CGCG 2 cut(s) 63, 198
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 3 cut(s) 112, 139, 466
BstYI RGATCY 3 cut(s) 112, 139, 466
BsuRI GGCC 1 cut(s) 454
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 544
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 484
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 452, 542
CseI GACGC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 88, 245, 571
CviAII CATG 1 cut(s) 593
CviQI GTAC 3 cut(s) 88, 245, 571
DdeI CTNAG 4 cut(s) 35, 95, 321, 609
DpnI GATC 3 cut(s) 114, 141, 468
DpnII GATC 3 cut(s) 112, 139, 466
Eam1104I CTCTTC 2 cut(s) 95, 332
EarI CTCTTC 2 cut(s) 95, 332
Eco47I GGWCC 1 cut(s) 542
Eco57I CTGAAG 1 cut(s) 356
Eco91I GGTNACC 1 cut(s) 329
EcoO65I GGTNACC 1 cut(s) 329
EcoRII CCWGG 2 cut(s) 186, 461
Esp3I CGTCTC 1 cut(s) 434
FaeI CATG 1 cut(s) 596
FaiI YATR 6 cut(s) 289, 361, 363, 374, 594, 649
FalI AAGNNNNNCTT 1 cut(s) 624
FaqI GGGAC 1 cut(s) 394
FatI CATG 1 cut(s) 592
Fnu4HI GCNGC 2 cut(s) 6, 128
FokI GGATG 1 cut(s) 512
Fsp4HI GCNGC 2 cut(s) 6, 128
GlaI GCGC 1 cut(s) 62
GluI GCNGC 2 cut(s) 6, 128
GsaI CCCAGC 1 cut(s) 139
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 1 cut(s) 454
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 63
Hin1II CATG 1 cut(s) 596
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 1 cut(s) 74
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 4 cut(s) 90, 154, 542, 615
Hpy188I TCNGA 3 cut(s) 73, 79, 112
Hpy188III TCNNGA 3 cut(s) 116, 234, 281
Hpy8I GTNNAC 4 cut(s) 90, 154, 542, 615
HpyAV CCTTC 1 cut(s) 402
HpyCH4IV ACGT 3 cut(s) 123, 427, 573
HpyCH4V TGCA 4 cut(s) 130, 162, 183, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 4 cut(s) 35, 95, 321, 609
HpySE526I ACGT 3 cut(s) 123, 427, 573
Hsp92II CATG 1 cut(s) 596
HspAI GCGC 1 cut(s) 61
KpnI GGTACC 1 cut(s) 248
Kzo9I GATC 3 cut(s) 112, 139, 466
LguI GCTCTTC 2 cut(s) 95, 332
LmnI GCTCC 2 cut(s) 283, 604
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 277
MaeII ACGT 3 cut(s) 123, 427, 573
MaeIII GTNAC 3 cut(s) 65, 199, 329
MalI GATC 3 cut(s) 114, 141, 468
MboI GATC 3 cut(s) 112, 139, 466
MboII GAAGA 3 cut(s) 112, 263, 349
MflI RGATCY 3 cut(s) 112, 139, 466
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 4 cut(s) 220, 384, 404, 528
MnlI CCTC 7 cut(s) 3, 90, 239, 353, 399, 497, 628
MroXI GAANNNNTTC 1 cut(s) 639
MseI TTAA 1 cut(s) 446
MspA1I CMGCKG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 188, 463
MvaI CCWGG 2 cut(s) 188, 463
MvnI CGCG 2 cut(s) 63, 198
MwoI GCNNNNNNNGC 1 cut(s) 348
NdeII GATC 3 cut(s) 112, 139, 466
NlaIII CATG 1 cut(s) 596
NlaIV GGNNCC 4 cut(s) 114, 141, 170, 246
PaqCI CACCTGC 1 cut(s) 188
PasI CCCWGGG 1 cut(s) 462
PciSI GCTCTTC 2 cut(s) 95, 332
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 639
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 7, 129
Psp6I CCWGG 2 cut(s) 186, 461
PspEI GGTNACC 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 2 cut(s) 186, 461
PspN4I GGNNCC 4 cut(s) 114, 141, 170, 246
PspPI GGNCC 2 cut(s) 452, 542
PsrI GAACNNNNNNTAC 2 cut(s) 517, 549
PstI CTGCAG 1 cut(s) 132
PsuI RGATCY 3 cut(s) 112, 139, 466
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 3 cut(s) 89, 246, 572
RsaNI GTAC 3 cut(s) 88, 245, 571
SapI GCTCTTC 2 cut(s) 95, 332
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 2 cut(s) 6, 128
Sau3AI GATC 3 cut(s) 112, 139, 466
Sau96I GGNCC 2 cut(s) 452, 542
ScrFI CCNGG 2 cut(s) 188, 463
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 1 cut(s) 128
SinI GGWCC 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 4 cut(s) 220, 384, 404, 528
SsiI CCGC 3 cut(s) 5, 63, 522
SspI AATATT 1 cut(s) 301
StyD4I CCNGG 2 cut(s) 186, 461
TaiI ACGT 3 cut(s) 126, 430, 576
TaqI TCGA 1 cut(s) 506
TasI AATT 4 cut(s) 220, 384, 404, 528
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 1 cut(s) 544
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 384
TspRI CASTG 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 542
XmnI GAANNNNTTC 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.