Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

47707228 .. 47707782

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G022350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCCGAGCACTTTCTTGTTATTCACCGTAACCCTAATCCTGAGTGTAGACCTCCTCACTGCCGTGGTGTACGCTAACCCTGAAGTGGCCGCTTTGTCCGCGCTGAAGAATAGCTTATCTGATCCAAACAAGGCGCTCCAGTCGTGGGATGCACAGCTTGTTGACCCTTGCACTTGGTTCCACATTACCTGCAACGATCAGAGCTACGTTACCCGAGTCCACCTAAGTTCGCAAAACCTCTCTGGCAAACTGGTACCTGAACTTGGAAACCTAACTCAACTTCGATATCTAGTACTCTTCAAGAACAACATTGAAGGAAGTATTCCAGCGGAGCTCGGTAAGCTGACGAACCTCGATTCCATGGCCTTGTCTGATAACAACCTCTCGGGGACCTTACCTTCTTCATTGGAGAACTTGAAATTACTTAAGATTCTAAATCTCAGTAATAACAAGTTTTTATCTGGGGCAGTCCCCCCGGGTCTTATTCATGTTCCGCGCCTCAACATCTCGAACACAAGTTTAACAATACCCCCTACCGGAAGGCCATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

184

Amino Acids

19.96

Weight (kDa)

6.82

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 65	8.4e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	82 - 152	6.5e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	2 cut(s)	101, 496
AciI	CCGC	4 cut(s)	90, 99, 329, 494
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	87
AcuI	CTGAAG	2 cut(s)	102, 125
AfaI	GTAC	3 cut(s)	71, 255, 294
AfiI	CCNNNNNNNGG	4 cut(s)	85, 145, 263, 536
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	301, 314, 418
AleI	CACNNNNGTG	1 cut(s)	62
AloI	GAACNNNNNNTCC	2 cut(s)	341, 373
AluBI	AGCT	5 cut(s)	114, 157, 204, 334, 343
AluI	AGCT	5 cut(s)	114, 157, 204, 334, 343
Alw21I	GWGCWC	2 cut(s)	11, 336
AlwI	GGATC	1 cut(s)	116
Ama87I	CYCGRG	3 cut(s)	213, 385, 475
AoxI	GGCC	3 cut(s)	87, 363, 542
Asp718I	GGTACC	1 cut(s)	253
AspLEI	GCGC	3 cut(s)	103, 136, 498
AspS9I	GGNCC	1 cut(s)	390
AsuC2I	CCSGG	2 cut(s)	476, 477
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	3 cut(s)	213, 385, 475
AvaII	GGWCC	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	336
Bbv12I	GWGCWC	2 cut(s)	11, 336
BceAI	ACGGC	1 cut(s)	47
BcnI	CCSGG	2 cut(s)	476, 477
BfaI	CTAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	137
BfrI	CTTAAG	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BmcAI	AGTACT	1 cut(s)	294
Bme1390I	CCNGG	2 cut(s)	476, 477
Bme18I	GGWCC	1 cut(s)	390
BmeT110I	CYCGRG	3 cut(s)	213, 385, 475
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	3 cut(s)	179, 255, 391
BmrFI	CCNGG	2 cut(s)	476, 477
BmsI	GCATC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	122
BpuMI	CCSGG	2 cut(s)	476, 477
BsaJI	CCNNGG	4 cut(s)	63, 360, 474, 475
BsaWI	WCCGGW	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 145, 263, 536
Bse1I	ACTGG	2 cut(s)	139, 255
BseDI	CCNNGG	4 cut(s)	63, 360, 474, 475
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	4 cut(s)	85, 145, 263, 536
BseMII	CTCAG	2 cut(s)	32, 454
BseNI	ACTGG	2 cut(s)	139, 255
BseRI	GAGGAG	1 cut(s)	44
Bsh1236I	CGCG	2 cut(s)	101, 496
BshFI	GGCC	3 cut(s)	89, 365, 544
BshNI	GGYRCC	1 cut(s)	253
BsiHKAI	GWGCWC	2 cut(s)	11, 336
BsiHKCI	CYCGRG	3 cut(s)	213, 385, 475
BsiSI	CCGG	2 cut(s)	476, 537
BslFI	GGGAC	2 cut(s)	403, 455
BslI	CCNNNNNNNGG	4 cut(s)	85, 145, 263, 536
BsmFI	GGGAC	2 cut(s)	403, 455
BsnI	GGCC	3 cut(s)	89, 365, 544
BsoBI	CYCGRG	3 cut(s)	213, 385, 475
Bsp1286I	GDGCHC	2 cut(s)	11, 336
Bsp143I	GATC	2 cut(s)	121, 196
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	4 cut(s)	90, 99, 329, 494
BspANI	GGCC	3 cut(s)	89, 365, 544
BspCNI	CTCAG	2 cut(s)	33, 453
BspFNI	CGCG	2 cut(s)	101, 496
BspLI	GGNNCC	3 cut(s)	179, 255, 391
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	253
BspTI	CTTAAG	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	139, 255
BssECI	CCNNGG	4 cut(s)	63, 360, 474, 475
BssMI	GATC	2 cut(s)	121, 196
BssT1I	CCWWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	302
BstAFI	CTTAAG	1 cut(s)	425
BstDEI	CTNAG	3 cut(s)	41, 224, 440
BstDSI	CCRYGG	2 cut(s)	63, 360
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	2 cut(s)	101, 496
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	3 cut(s)	103, 136, 498
BstKTI	GATC	2 cut(s)	124, 199
BstMBI	GATC	2 cut(s)	121, 196
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 340
BstSCI	CCNGG	2 cut(s)	474, 475
BstUI	CGCG	2 cut(s)	101, 496
BsuRI	GGCC	3 cut(s)	89, 365, 544
BtgI	CCRYGG	2 cut(s)	63, 360
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	197
CfoI	GCGC	3 cut(s)	103, 136, 498
Cfr13I	GGNCC	1 cut(s)	390
Cfr9I	CCCGGG	1 cut(s)	475
Csp6I	GTAC	3 cut(s)	70, 254, 293
CviAII	CATG	2 cut(s)	361, 488
CviJI	RGCY	8 cut(s)	89, 114, 157, 204, 334, 343, 365, 544
CviKI_1	RGCY	8 cut(s)	89, 114, 157, 204, 334, 343, 365, 544
CviQI	GTAC	3 cut(s)	70, 254, 293
DdeI	CTNAG	3 cut(s)	41, 224, 440
DpnI	GATC	2 cut(s)	123, 198
DpnII	GATC	2 cut(s)	121, 196
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	336
Eco32I	GATATC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	2 cut(s)	102, 125
Eco88I	CYCGRG	3 cut(s)	213, 385, 475
EcoICRI	GAGCTC	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	390
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	2 cut(s)	364, 491
FaiI	YATR	2 cut(s)	362, 489
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	2 cut(s)	403, 455
FatI	CATG	2 cut(s)	360, 487
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	3 cut(s)	102, 135, 497
GluI	GCNGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	3 cut(s)	89, 365, 544
HapII	CCGG	2 cut(s)	476, 537
HhaI	GCGC	3 cut(s)	103, 136, 498
Hin1II	CATG	2 cut(s)	364, 491
Hin6I	GCGC	3 cut(s)	101, 134, 496
HinP1I	GCGC	3 cut(s)	101, 134, 496
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	3 cut(s)	216, 356, 430
HpaII	CCGG	2 cut(s)	476, 537
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	4 cut(s)	49, 70, 163, 220
Hpy188I	TCNGA	3 cut(s)	121, 201, 373
Hpy188III	TCNNGA	3 cut(s)	40, 301, 508
Hpy8I	GTNNAC	4 cut(s)	49, 70, 163, 220
HpyAV	CCTTC	3 cut(s)	308, 408, 534
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	152, 171, 192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 340
HpyF3I	CTNAG	3 cut(s)	41, 224, 440
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	364, 491
HspAI	GCGC	3 cut(s)	101, 134, 496
KpnI	GGTACC	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	121, 196
LmnI	GCTCC	2 cut(s)	141, 331
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	28, 208
MalI	GATC	2 cut(s)	123, 198
MboI	GATC	2 cut(s)	121, 196
MboII	GAAGA	3 cut(s)	118, 289, 393
MhlI	GDGCHC	2 cut(s)	11, 336
MluCI	AATT	1 cut(s)	419
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	6 cut(s)	62, 65, 248, 362, 392, 509
MseI	TTAA	3 cut(s)	426, 521, 553
MslI	CAYNNNNRTG	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	329
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	2 cut(s)	476, 537
MspR9I	CCNGG	2 cut(s)	476, 477
MvnI	CGCG	2 cut(s)	101, 496
MwoI	GCNNNNNNNGC	2 cut(s)	98, 340
NciI	CCSGG	2 cut(s)	476, 477
NcoI	CCATGG	1 cut(s)	360
NdeII	GATC	2 cut(s)	121, 196
NlaIII	CATG	2 cut(s)	364, 491
NlaIV	GGNNCC	3 cut(s)	179, 255, 391
NmeAIII	GCCGAG	1 cut(s)	30
OliI	CACNNNNGTG	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	356, 430
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PpuMI	RGGWCCY	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	390
PspN4I	GGNNCC	3 cut(s)	179, 255, 391
PspPI	GGNCC	1 cut(s)	390
PspPPI	RGGWCCY	1 cut(s)	390
RsaI	GTAC	3 cut(s)	71, 255, 294
RsaNI	GTAC	3 cut(s)	70, 254, 293
RseI	CAYNNNNRTG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	426, 521, 553
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	121, 196
Sau96I	GGNCC	1 cut(s)	390
ScaI	AGTACT	1 cut(s)	294
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	2 cut(s)	476, 477
SduI	GDGCHC	2 cut(s)	11, 336
SfaNI	GCATC	1 cut(s)	139
SinI	GGWCC	1 cut(s)	390
SmaI	CCCGGG	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	1 cut(s)	419
SsiI	CCGC	4 cut(s)	90, 99, 329, 494
SspMI	CTAG	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	474, 475
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	3 cut(s)	283, 354, 509
TasI	AATT	1 cut(s)	419
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	2 cut(s)	356, 430
Tru1I	TTAA	3 cut(s)	426, 521, 553
Tru9I	TTAA	3 cut(s)	426, 521, 553
TscAI	CASTG	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	393, 476
TspMI	CCCGGG	1 cut(s)	475
TspRI	CASTG	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	390
XmaI	CCCGGG	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.