Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8518351.1

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

3948 .. 4394

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8518351.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgccaatcaagccgatccatgcagttggtcacacatcgtctgcaatcaagacaaaaaaagtcactggagtgttcttaattaacagccagctttctggacatctggtacctgaacttggatcgctttcggctctcgagcggctgattcttcctcagaatgacatctcaggaacaattccatctgagcttggtaacctgaagacactccagactctcatattaggttataatagattatcgggcagcattcctcctactctaggtaatttgcaatcacttcgtaccttgggtctcgatcataacgaattgagtgggaaaatcccttccggaattgcaaccattaaaagcctccaaattgcgtcttttatcgacaacaaaagtttatgttgggagttttcgccgacaccaatatataaaggcagttacccattatgccagaagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8

Protein Analysis

148

Amino Acids

15.9

Weight (kDa)

9.52

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
Acc65I	GGTACC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	139
AccIII	TCCGGA	1 cut(s)	326
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	2 cut(s)	10, 127
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	2 cut(s)	108, 283
AfiI	CCNNNNNNNGG	2 cut(s)	116, 260
AleI	CACNNNNGTG	1 cut(s)	68
AluBI	AGCT	2 cut(s)	91, 187
AluI	AGCT	2 cut(s)	91, 187
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	10, 127
Ama87I	CYCGRG	1 cut(s)	134
Aor13HI	TCCGGA	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	243
Asp718I	GGTACC	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	187
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	2 cut(s)	140, 244
BlsI	GCNGC	2 cut(s)	141, 245
BmeT110I	CYCGRG	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	206
BpmI	CTGGAG	2 cut(s)	87, 191
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	285
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 260
Bse1I	ACTGG	1 cut(s)	70
BseAI	TCCGGA	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	285
BseLI	CCNNNNNNNGG	2 cut(s)	116, 260
BseMII	CTCAG	3 cut(s)	167, 174, 180
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	116, 260
BsmAI	GTCTC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	246
Bso31I	GGTCTC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	134
Bsp13I	TCCGGA	1 cut(s)	326
Bsp143I	GATC	3 cut(s)	15, 119, 295
BspACI	CCGC	1 cut(s)	139
BspCNI	CTCAG	3 cut(s)	166, 175, 179
BspEI	TCCGGA	1 cut(s)	326
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	10, 127
BspT107I	GGYRCC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	3 cut(s)	15, 119, 295
BssT1I	CCWWGG	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	3 cut(s)	153, 166, 183
BstEII	GGTNACC	1 cut(s)	191
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstKTI	GATC	3 cut(s)	18, 122, 298
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	3 cut(s)	15, 119, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstPI	GGTNACC	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	206
BstXI	CCANNNNNNTGG	2 cut(s)	26, 95
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	89
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	107, 282
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	7 cut(s)	13, 87, 91, 131, 142, 187, 348
CviKI_1	RGCY	7 cut(s)	13, 87, 91, 131, 142, 187, 348
CviQI	GTAC	2 cut(s)	107, 282
DdeI	CTNAG	3 cut(s)	153, 166, 183
DpnI	GATC	3 cut(s)	17, 121, 297
DpnII	GATC	3 cut(s)	15, 119, 295
Eco130I	CCWWGG	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	134
Eco91I	GGTNACC	1 cut(s)	191
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoO65I	GGTNACC	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	1 cut(s)	23
FaiI	YATR	8 cut(s)	21, 218, 228, 300, 385, 412, 414, 433
FatI	CATG	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	140, 244
Fsp4HI	GCNGC	2 cut(s)	140, 244
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	2 cut(s)	140, 244
GsuI	CTGGAG	2 cut(s)	87, 191
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	23
HinfI	GANTC	2 cut(s)	145, 211
HpaII	CCGG	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	156, 184
Hpy188III	TCNNGA	7 cut(s)	49, 96, 134, 168, 208, 293, 327
HpyAV	CCTTC	1 cut(s)	333
HpyCH4V	TGCA	4 cut(s)	23, 44, 271, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	3 cut(s)	153, 166, 183
Hsp92II	CATG	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	326
KpnI	GGTACC	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	15, 119, 295
LpnPI	CCDG	9 cut(s)	51, 81, 89, 101, 123, 153, 209, 221, 340
Lsp1109I	GCAGC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	4 cut(s)	29, 61, 191, 422
MalI	GATC	3 cut(s)	17, 121, 297
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	3 cut(s)	15, 119, 295
MboII	GAAGA	2 cut(s)	140, 211
MluCI	AATT	6 cut(s)	78, 174, 265, 305, 330, 354
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	162, 261, 359
MroI	TCCGGA	1 cut(s)	326
MseI	TTAA	3 cut(s)	77, 81, 342
MslI	CAYNNNNRTG	1 cut(s)	68
MspI	CCGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	3 cut(s)	15, 119, 295
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	2 cut(s)	29, 61
OliI	CACNNNNGTG	1 cut(s)	68
PacI	TTAATTAA	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PctI	GAATGC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	141, 245
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PsiI	TTATAA	1 cut(s)	228
PspEI	GGTNACC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	108
RsaI	GTAC	2 cut(s)	108, 283
RsaNI	GTAC	2 cut(s)	107, 282
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	3 cut(s)	77, 81, 342
SatI	GCNGC	2 cut(s)	140, 244
Sau3AI	GATC	3 cut(s)	15, 119, 295
SchI	GAGTC	1 cut(s)	205
SetI	ASST	7 cut(s)	93, 112, 189, 198, 226, 265, 287
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	6 cut(s)	78, 174, 265, 305, 330, 354
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	285
TaqI	TCGA	3 cut(s)	135, 294, 369
TasI	AATT	6 cut(s)	78, 174, 265, 305, 330, 354
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	3 cut(s)	77, 81, 342
Tru9I	TTAA	3 cut(s)	77, 81, 342
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	2 cut(s)	29, 61
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	2 cut(s)	29, 61
TspRI	CASTG	1 cut(s)	70
XagI	CCTNNNNNAGG	1 cut(s)	258
XhoI	CTCGAG	1 cut(s)	134
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.