Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

16500174 .. 16500728

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCCGTGCACTTTCTTGTTATTCGCCGTAACCCTAATCCTGAGCGTAGACCTCCTCACTGCCGTGGTGTACCCTGACCCTGAAGTGGCCGCTTTGTCCGAGCTGAAGAATAGCTTATCTGATCCAGAAAAGGCGCTCCAGTCGTGGGATCCACAGCTTGTCAACCCTTGCACTTGGTTCCACATTACCTGCAACGATCAGAACTACGTTACCCGAGTAGACCTAATTTCACAAAACCTCTCTGGAAAACTGGTACCTGAACTTGGAAACCTAACTCAACTTCGATATCTAGTACTCTTCAAGAACAACATTGAAGGAAGTATTCCAGCGGAGCTTGGTAAGCTGACGAACCTCGATGCCATGGACTTGTCTGATAACAACCTCTCGGGGACCTTACCTTCTTCATTGGAGAATTTGAAATTACTTAATATTCTAAATCTCAGTAATAACAAGTTTTTATCTGGGGCAGTCCCCCCGGGTCTTATTCGTGTTCCGCGCCTCGACATCTCGAACACAAGTTTAACAATACCTCCTACCGGAAGGCCATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

185

Amino Acids

20.14

Weight (kDa)

4.75

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 65	5.1e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	83 - 152	1.1e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	253
AccI	GTMKAC	2 cut(s)	48, 219
AccII	CGCG	1 cut(s)	496
AciI	CCGC	3 cut(s)	90, 329, 494
AclWI	GGATC	3 cut(s)	116, 143, 156
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	2 cut(s)	102, 125
AfaI	GTAC	3 cut(s)	71, 255, 294
AfiI	CCNNNNNNNGG	4 cut(s)	85, 145, 263, 536
AgsI	TTSAA	3 cut(s)	301, 314, 418
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	5 cut(s)	103, 114, 157, 334, 343
AluI	AGCT	5 cut(s)	103, 114, 157, 334, 343
Alw21I	GWGCWC	1 cut(s)	11
Alw44I	GTGCAC	1 cut(s)	7
AlwI	GGATC	3 cut(s)	116, 143, 156
Ama87I	CYCGRG	3 cut(s)	213, 385, 475
AoxI	GGCC	2 cut(s)	87, 542
ApaLI	GTGCAC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	412
Asp718I	GGTACC	1 cut(s)	253
AspLEI	GCGC	2 cut(s)	136, 498
AspS9I	GGNCC	1 cut(s)	390
AsuC2I	CCSGG	2 cut(s)	476, 477
AvaI	CYCGRG	3 cut(s)	213, 385, 475
AvaII	GGWCC	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	11
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	11
BceAI	ACGGC	2 cut(s)	11, 47
BcnI	CCSGG	2 cut(s)	476, 477
BfaI	CTAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BmcAI	AGTACT	1 cut(s)	294
Bme1390I	CCNGG	2 cut(s)	476, 477
Bme18I	GGWCC	1 cut(s)	390
BmeT110I	CYCGRG	3 cut(s)	213, 385, 475
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	4 cut(s)	150, 179, 255, 391
BmrFI	CCNGG	2 cut(s)	476, 477
BmsI	GCATC	1 cut(s)	346
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	476, 477
BsaJI	CCNNGG	4 cut(s)	63, 360, 474, 475
BsaWI	WCCGGW	1 cut(s)	536
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 145, 263, 536
Bse1I	ACTGG	2 cut(s)	139, 255
BseDI	CCNNGG	4 cut(s)	63, 360, 474, 475
BseLI	CCNNNNNNNGG	4 cut(s)	85, 145, 263, 536
BseMII	CTCAG	2 cut(s)	32, 454
BseNI	ACTGG	2 cut(s)	139, 255
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	496
BshFI	GGCC	2 cut(s)	89, 544
BshNI	GGYRCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	3 cut(s)	213, 385, 475
BsiSI	CCGG	2 cut(s)	476, 537
BslFI	GGGAC	2 cut(s)	403, 455
BslI	CCNNNNNNNGG	4 cut(s)	85, 145, 263, 536
BsmFI	GGGAC	2 cut(s)	403, 455
BsnI	GGCC	2 cut(s)	89, 544
BsoBI	CYCGRG	3 cut(s)	213, 385, 475
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	121, 148, 196
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	3 cut(s)	90, 329, 494
BspANI	GGCC	2 cut(s)	89, 544
BspCNI	CTCAG	2 cut(s)	33, 453
BspFNI	CGCG	1 cut(s)	496
BspLI	GGNNCC	4 cut(s)	150, 179, 255, 391
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	3 cut(s)	116, 143, 156
BspT107I	GGYRCC	1 cut(s)	253
BsrI	ACTGG	2 cut(s)	139, 255
BssECI	CCNNGG	4 cut(s)	63, 360, 474, 475
BssMI	GATC	3 cut(s)	121, 148, 196
BssT1I	CCWWGG	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	41, 440
BstDSI	CCRYGG	2 cut(s)	63, 360
BstFNI	CGCG	1 cut(s)	496
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	2 cut(s)	136, 498
BstKTI	GATC	3 cut(s)	124, 151, 199
BstMBI	GATC	3 cut(s)	121, 148, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstSCI	CCNGG	2 cut(s)	474, 475
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	1 cut(s)	496
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	89, 544
BtgI	CCRYGG	2 cut(s)	63, 360
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	197
CfoI	GCGC	2 cut(s)	136, 498
Cfr13I	GGNCC	1 cut(s)	390
Cfr9I	CCCGGG	1 cut(s)	475
Csp6I	GTAC	3 cut(s)	70, 254, 293
CviAII	CATG	1 cut(s)	361
CviJI	RGCY	7 cut(s)	89, 103, 114, 157, 334, 343, 544
CviKI_1	RGCY	7 cut(s)	89, 103, 114, 157, 334, 343, 544
CviQI	GTAC	3 cut(s)	70, 254, 293
DdeI	CTNAG	2 cut(s)	41, 440
DpnI	GATC	3 cut(s)	123, 150, 198
DpnII	GATC	3 cut(s)	121, 148, 196
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	390
Eco57I	CTGAAG	2 cut(s)	102, 125
Eco88I	CYCGRG	3 cut(s)	213, 385, 475
EcoO109I	RGGNCCY	1 cut(s)	390
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	1 cut(s)	364
FaiI	YATR	1 cut(s)	362
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	2 cut(s)	403, 455
FatI	CATG	1 cut(s)	360
FblI	GTMKAC	2 cut(s)	48, 219
Fnu4HI	GCNGC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	2 cut(s)	135, 497
GluI	GCNGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	89, 544
HapII	CCGG	2 cut(s)	476, 537
HhaI	GCGC	2 cut(s)	136, 498
Hin1II	CATG	1 cut(s)	364
Hin6I	GCGC	2 cut(s)	134, 496
HinP1I	GCGC	2 cut(s)	134, 496
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	476, 537
Hpy166II	GTNNAC	5 cut(s)	9, 49, 70, 163, 220
Hpy188I	TCNGA	4 cut(s)	100, 121, 201, 373
Hpy188III	TCNNGA	5 cut(s)	40, 125, 243, 301, 508
Hpy8I	GTNNAC	5 cut(s)	9, 49, 70, 163, 220
HpyAV	CCTTC	3 cut(s)	308, 408, 534
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	9, 171, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	2 cut(s)	41, 440
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	364
HspAI	GCGC	2 cut(s)	134, 496
KpnI	GGTACC	1 cut(s)	257
Kzo9I	GATC	3 cut(s)	121, 148, 196
LmnI	GCTCC	2 cut(s)	141, 331
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	28, 208
MalI	GATC	3 cut(s)	123, 150, 198
MboI	GATC	3 cut(s)	121, 148, 196
MboII	GAAGA	3 cut(s)	118, 289, 393
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	3 cut(s)	225, 412, 419
MnlI	CCTC	7 cut(s)	62, 65, 248, 362, 392, 509, 540
MseI	TTAA	3 cut(s)	426, 521, 553
MslI	CAYNNNNRTG	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	2 cut(s)	476, 537
MspR9I	CCNGG	2 cut(s)	476, 477
MvnI	CGCG	1 cut(s)	496
MwoI	GCNNNNNNNGC	1 cut(s)	340
NciI	CCSGG	2 cut(s)	476, 477
NcoI	CCATGG	1 cut(s)	360
NdeII	GATC	3 cut(s)	121, 148, 196
NlaIII	CATG	1 cut(s)	364
NlaIV	GGNNCC	4 cut(s)	150, 179, 255, 391
OliI	CACNNNNGTG	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	390
PspN4I	GGNNCC	4 cut(s)	150, 179, 255, 391
PspPI	GGNCC	1 cut(s)	390
PspPPI	RGGWCCY	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	3 cut(s)	71, 255, 294
RsaNI	GTAC	3 cut(s)	70, 254, 293
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	426, 521, 553
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	3 cut(s)	121, 148, 196
Sau96I	GGNCC	1 cut(s)	390
ScaI	AGTACT	1 cut(s)	294
ScrFI	CCNGG	2 cut(s)	476, 477
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	1 cut(s)	346
SinI	GGWCC	1 cut(s)	390
SmaI	CCCGGG	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	3 cut(s)	225, 412, 419
SsiI	CCGC	3 cut(s)	90, 329, 494
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	474, 475
StyI	CCWWGG	1 cut(s)	360
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	4 cut(s)	283, 354, 501, 509
TasI	AATT	3 cut(s)	225, 412, 419
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	3 cut(s)	426, 521, 553
Tru9I	TTAA	3 cut(s)	426, 521, 553
TscAI	CASTG	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	393
TspMI	CCCGGG	1 cut(s)	475
TspRI	CASTG	1 cut(s)	64
VneI	GTGCAC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	1 cut(s)	412
XmaI	CCCGGG	1 cut(s)	475
XmiI	GTMKAC	2 cut(s)	48, 219
XspI	CTAG	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.