Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

9147435 .. 9148144

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCAGAGAAAGGATTTGGACTACGGTGTGAATTCTCTTGATAAGTCATCCCAACCCCCGTGCAATGGCGACAAAAAGGTCATCGGATTGTCCTTGATCAAGAGCCGGCTCTCTGGACATTTGGTACCTGAACTTGGTTCGCTTTCGTATCTCCAGGAGATCATTATGGATCACAATAAACTCTCAGGACGAATTCCATATTCGCTTGGTGACCTACGTGACCTCGCGACTCTCATATTAAGTTTTAATGCACTAGAAGGTGACGTTCCTCCTACATTGGGTAAGTTGCGATGTCTTAGTGCCTTAGGTCTCGACAATAACGATTTAGATGGGAGAATCCCTGCCGAAATTGCAACACTTCCATCCCTACGAATTGCGGCTTTCTATGCCAACATTGATTTATGCTGGATGTTTAAACCCACACAACCAAAATTTAGAGCCGATTACCACTATCGATTATGCCAGCGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8

Protein Analysis

158

Amino Acids

17.53

Weight (kDa)

8.35

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
Acc65I	GGTACC	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	124
AccII	CGCG	1 cut(s)	227
AciI	CCGC	2 cut(s)	377, 466
AclWI	GGATC	1 cut(s)	177
AcsI	RAATTY	3 cut(s)	31, 192, 431
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	3 cut(s)	65, 134, 278
AjnI	CCWGG	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	177
ApoI	RAATTY	3 cut(s)	31, 192, 431
Asp718I	GGTACC	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	221, 272
AxyI	CCTNAGG	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	124
BccI	CCATC	2 cut(s)	323, 370
BciT130I	CCWGG	1 cut(s)	155
BclI	TGATCA	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	1 cut(s)	254
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	454
BsaAI	YACGTR	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 134, 278
Bse118I	RCCGGY	1 cut(s)	105
Bse21I	CCTNAGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	155
BseCI	ATCGAT	1 cut(s)	454
BseGI	GGATG	4 cut(s)	47, 362, 414, 474
BseLI	CCNNNNNNNGG	3 cut(s)	65, 134, 278
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	124
BshVI	ATCGAT	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	106
BslI	CCNNNNNNNGG	3 cut(s)	65, 134, 278
BsmAI	GTCTC	1 cut(s)	314
Bso31I	GGTCTC	1 cut(s)	314
Bsp143I	GATC	3 cut(s)	96, 159, 169
Bsp68I	TCGCGA	1 cut(s)	227
BspACI	CCGC	2 cut(s)	377, 466
BspCNI	CTCAG	1 cut(s)	197
BspDI	ATCGAT	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	105
BssMI	GATC	3 cut(s)	96, 159, 169
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	107, 464
BstDEI	CTNAG	3 cut(s)	184, 296, 304
BstEII	GGTNACC	1 cut(s)	209
BstF5I	GGATG	4 cut(s)	47, 362, 414, 474
BstFNI	CGCG	1 cut(s)	227
BstKTI	GATC	3 cut(s)	99, 162, 172
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	3 cut(s)	96, 159, 169
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 386
BstNI	CCWGG	1 cut(s)	155
BstPI	GGTNACC	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	153
BstUI	CGCG	1 cut(s)	227
Bsu15I	ATCGAT	1 cut(s)	454
Bsu36I	CCTNAGG	1 cut(s)	304
BsuTUI	ATCGAT	1 cut(s)	454
BtgZI	GCGATG	1 cut(s)	304
BtsCI	GGATG	4 cut(s)	47, 362, 414, 474
BtuMI	TCGCGA	1 cut(s)	227
Cac8I	GCNNGC	2 cut(s)	107, 464
Cfr10I	RCCGGY	1 cut(s)	105
ClaI	ATCGAT	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	125
CviJI	RGCY	4 cut(s)	105, 109, 380, 440
CviKI_1	RGCY	4 cut(s)	105, 109, 380, 440
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	3 cut(s)	184, 296, 304
DpnI	GATC	3 cut(s)	98, 161, 171
DpnII	GATC	3 cut(s)	96, 159, 169
DraI	TTTAAA	1 cut(s)	415
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	314
Eco81I	CCTNAGG	1 cut(s)	304
Eco91I	GGTNACC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	209
EcoRI	GAATTC	2 cut(s)	31, 192
EcoRII	CCWGG	1 cut(s)	153
FaiI	YATR	6 cut(s)	167, 199, 236, 387, 403, 460
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	3 cut(s)	34, 349, 421
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	137
HapII	CCGG	1 cut(s)	106
HinfI	GANTC	2 cut(s)	229, 336
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	2 cut(s)	221, 272
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	6 cut(s)	38, 100, 114, 186, 226, 311
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	2 cut(s)	217, 264
HpyCH4V	TGCA	4 cut(s)	4, 63, 251, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 386
HpyF3I	CTNAG	3 cut(s)	184, 296, 304
HpySE526I	ACGT	2 cut(s)	217, 264
KpnI	GGTACC	1 cut(s)	128
KroI	GCCGGC	1 cut(s)	105
KroNI	GCCGGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	96, 159, 169
LpnPI	CCDG	8 cut(s)	99, 119, 140, 141, 167, 171, 354, 391
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	2 cut(s)	217, 264
MaeIII	GTNAC	3 cut(s)	209, 218, 260
MalI	GATC	3 cut(s)	98, 161, 171
MboI	GATC	3 cut(s)	96, 159, 169
MluCI	AATT	5 cut(s)	31, 192, 348, 372, 431
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	2 cut(s)	233, 279
MroNI	GCCGGC	1 cut(s)	105
MseI	TTAA	3 cut(s)	239, 246, 414
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	155
MssI	GTTTAAAC	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	155
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	350, 386
NaeI	GCCGGC	1 cut(s)	107
NdeII	GATC	3 cut(s)	96, 159, 169
NgoMIV	GCCGGC	1 cut(s)	105
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	3 cut(s)	209, 218, 260
NruI	TCGCGA	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PdiI	GCCGGC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	336
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	379
PleI	GAGTC	1 cut(s)	223
PmeI	GTTTAAAC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	223
Ppu21I	YACGTR	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	126
RruI	TCGCGA	1 cut(s)	227
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	239, 246, 414
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	3 cut(s)	96, 159, 169
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	8 cut(s)	81, 130, 216, 220, 225, 262, 267, 310
Sse9I	AATT	5 cut(s)	31, 192, 348, 372, 431
SsiI	CCGC	2 cut(s)	377, 466
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	2 cut(s)	220, 267
TaqI	TCGA	2 cut(s)	312, 454
TasI	AATT	5 cut(s)	31, 192, 348, 372, 431
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	3 cut(s)	239, 246, 414
Tru9I	TTAA	3 cut(s)	239, 246, 414
TseFI	GTSAC	3 cut(s)	209, 218, 260
Tsp45I	GTSAC	3 cut(s)	209, 218, 260
XapI	RAATTY	3 cut(s)	31, 192, 431
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.