Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8267339.1

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 821

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8267339.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ggtctccgccaacgtcgaaggtgacgcattgaatgccttgaagagcagtttggctgatcctaacaatgttctccagagttgggatcctactctggtcaatccctgcacgtggttccatgtcacttgcaactccgaaaacagcgtcaccagagttgatcttggcaatgctaatctctccggtaacctggttacgcagctcggagtgctcaccaatttacagtacttggaactttatagtaataacataagcggtaatattccaacagagcttggcggtttgaacaacctggtgagcttggatctttacttgaacaatttagatggccaaattccatcgacacttggcaaccttgaaaagctgcgtttcct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

123

Amino Acids

13.27

Weight (kDa)

4.18

Isoelectric Point (pI)

24.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	7, 250, 274
AclWI	GGATC	4 cut(s)	51, 78, 91, 307
AcoI	YGGCCR	1 cut(s)	323
AcsI	RAATTY	1 cut(s)	328
AcvI	CACGTG	1 cut(s)	109
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	80, 109
AgsI	TTSAA	5 cut(s)	32, 41, 281, 311, 354
AjnI	CCWGG	2 cut(s)	184, 286
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	4 cut(s)	197, 269, 295, 359
AluI	AGCT	4 cut(s)	197, 269, 295, 359
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	4 cut(s)	51, 78, 91, 307
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	2 cut(s)	194, 359
ApoI	RAATTY	1 cut(s)	328
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
AsuHPI	GGTGA	4 cut(s)	33, 137, 200, 302
BalI	TGGCCA	1 cut(s)	325
BamHI	GGATCC	1 cut(s)	83
BbrPI	CACGTG	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	206, 346
BccI	CCATC	2 cut(s)	315, 341
BciT130I	CCWGG	2 cut(s)	186, 288
BcoDI	GTCTC	1 cut(s)	8
BisI	GCNGC	2 cut(s)	195, 360
BlsI	GCNGC	2 cut(s)	196, 361
BmcAI	AGTACT	1 cut(s)	222
Bme1390I	CCNGG	2 cut(s)	186, 288
BmiI	GGNNCC	2 cut(s)	85, 114
BmrFI	CCNGG	2 cut(s)	186, 288
BpmI	CTGGAG	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	109
BsaI	GGTCTC	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 109
Bse3DI	GCAATG	1 cut(s)	170
BseBI	CCWGG	2 cut(s)	186, 288
BseLI	CCNNNNNNNGG	2 cut(s)	80, 109
BseMI	GCAATG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	206, 346
BsgI	GTGCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	80, 109
BsmAI	GTCTC	1 cut(s)	8
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	325
Bso31I	GGTCTC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	56, 83, 155, 299
BspACI	CCGC	3 cut(s)	7, 250, 274
BspANI	GGCC	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	85, 114
BspPI	GGATC	4 cut(s)	51, 78, 91, 307
BspQI	GCTCTTC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	170
BssMI	GATC	4 cut(s)	56, 83, 155, 299
Bst2UI	CCWGG	2 cut(s)	186, 288
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	109
BstEII	GGTNACC	1 cut(s)	180
BstKTI	GATC	4 cut(s)	59, 86, 158, 302
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	4 cut(s)	56, 83, 155, 299
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 203
BstNI	CCWGG	2 cut(s)	186, 288
BstPI	GGTNACC	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	184, 286
BstV1I	GCAGC	2 cut(s)	206, 346
BstX2I	RGATCY	2 cut(s)	83, 299
BstYI	RGATCY	2 cut(s)	83, 299
BsuRI	GGCC	1 cut(s)	325
CseI	GACGC	2 cut(s)	33, 131
CsiI	ACCWGGT	2 cut(s)	184, 286
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	1 cut(s)	117
CviJI	RGCY	6 cut(s)	54, 197, 269, 295, 325, 359
CviKI_1	RGCY	6 cut(s)	54, 197, 269, 295, 325, 359
CviQI	GTAC	1 cut(s)	221
DpnI	GATC	4 cut(s)	58, 85, 157, 301
DpnII	GATC	4 cut(s)	56, 83, 155, 299
EaeI	YGGCCR	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	8
Eco72I	CACGTG	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	180
EcoO65I	GGTNACC	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	184, 286
FaeI	CATG	1 cut(s)	120
FaiI	YATR	3 cut(s)	118, 235, 246
FatI	CATG	1 cut(s)	116
Fnu4HI	GCNGC	2 cut(s)	195, 360
Fsp4HI	GCNGC	2 cut(s)	195, 360
GluI	GCNGC	2 cut(s)	195, 360
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	1 cut(s)	178
HgaI	GACGC	2 cut(s)	33, 131
Hin1II	CATG	1 cut(s)	120
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	4 cut(s)	33, 137, 200, 302
Hpy188I	TCNGA	2 cut(s)	134, 201
Hpy188III	TCNNGA	1 cut(s)	74
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	1 cut(s)	12
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	2 cut(s)	13, 108
HpyCH4V	TGCA	2 cut(s)	106, 127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 203
HpySE526I	ACGT	2 cut(s)	13, 108
Hsp92II	CATG	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	56, 83, 155, 299
LguI	GCTCTTC	1 cut(s)	36
LpnPI	CCDG	9 cut(s)	78, 87, 116, 161, 171, 191, 198, 273, 300
Lsp1109I	GCAGC	2 cut(s)	206, 346
MabI	ACCWGGT	2 cut(s)	184, 286
MaeII	ACGT	2 cut(s)	13, 108
MaeIII	GTNAC	5 cut(s)	21, 119, 143, 180, 188
MalI	GATC	4 cut(s)	58, 85, 157, 301
MboI	GATC	4 cut(s)	56, 83, 155, 299
MboII	GAAGA	1 cut(s)	53
MflI	RGATCY	2 cut(s)	83, 299
MhlI	GDGCHC	1 cut(s)	208
MlsI	TGGCCA	1 cut(s)	325
MluCI	AATT	3 cut(s)	212, 314, 328
MluNI	TGGCCA	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	285
Mox20I	TGGCCA	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	325
Msp20I	TGGCCA	1 cut(s)	325
MspI	CCGG	1 cut(s)	178
MspR9I	CCNGG	2 cut(s)	186, 288
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	2 cut(s)	186, 288
MwoI	GCNNNNNNNGC	2 cut(s)	33, 203
NdeII	GATC	4 cut(s)	56, 83, 155, 299
NlaIII	CATG	1 cut(s)	120
NlaIV	GGNNCC	2 cut(s)	85, 114
NmuCI	GTSAC	3 cut(s)	21, 119, 143
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	196, 361
PmaCI	CACGTG	1 cut(s)	109
PmlI	CACGTG	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	184, 286
PspCI	CACGTG	1 cut(s)	109
PspEI	GGTNACC	1 cut(s)	180
PspGI	CCWGG	2 cut(s)	184, 286
PspN4I	GGNNCC	2 cut(s)	85, 114
PsuI	RGATCY	2 cut(s)	83, 299
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	36
SatI	GCNGC	2 cut(s)	195, 360
Sau3AI	GATC	4 cut(s)	56, 83, 155, 299
ScaI	AGTACT	1 cut(s)	222
ScrFI	CCNGG	2 cut(s)	186, 288
SduI	GDGCHC	1 cut(s)	208
SexAI	ACCWGGT	2 cut(s)	184, 286
Sse9I	AATT	3 cut(s)	212, 314, 328
SsiI	CCGC	3 cut(s)	7, 250, 274
SspI	AATATT	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	184, 286
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	2 cut(s)	16, 111
TaqI	TCGA	2 cut(s)	16, 336
TasI	AATT	3 cut(s)	212, 314, 328
TatI	WGTACW	1 cut(s)	220
TseFI	GTSAC	3 cut(s)	21, 119, 143
TseI	GCWGC	2 cut(s)	194, 359
Tsp45I	GTSAC	3 cut(s)	21, 119, 143
XapI	RAATTY	1 cut(s)	328
ZrmI	AGTACT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.