Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

16562615 .. 16567313

Gene Structure 4699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g15710.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGGCGGCATCCAGGTTCTTCTTCACTCTAACCCTAACCCTAAGCGTATGCCTCCTTCCGCTGGTGTATTGCAACTCCGAAGGCGACGCTTTGTACACGTTCCGGCGGAGCTTGTCGGATCCCGATAACCTGCTCCAGAGCTGGGATCCTACCCTCGTCAACCCTTGCACTTGGTTTCACATCACCTGCAACCAGGACAATCGCGTTACCCGAGTGGATTTAGGTAATTCAAACCTCTCTGGACATTTGGTACCTGAACTAGGAAAGCTTGAGCATCTTCAATATCTGGAGCTTTACAAAAATAACATTCAAGGAACTATTCCAGCTGAGCTTGGTAACCTGAAGAGCCTCATTAGCTTGGACTTATATAACAACAACATATCGGGGACCATTCCTCCGTCGTTGGGGAAATTGAAATCACTTGTGTTTTTGCGTCTCAATGACAATAGGTTAACTGGGCCAATCCCCAGGGATCTTACGGGTATTTCAAGCCTCAAAGTTGTGGATGTATCAAACAATGATTTATGTGGGACGATTCCTACCAGTGGACCATTTGAGCACATCCCCTTGAACAACTTTGAGAACAACCATCGACTCGAAGGTCCAGAATTGTTGGGACTTGCAAGTTACGATACAAACTGCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

217

Amino Acids

23.9

Weight (kDa)

5.28

Isoelectric Point (pI)

28.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	197
AasI	GACNNNNNNGTC	1 cut(s)	603
Acc36I	ACCTGC	2 cut(s)	141, 197
Acc65I	GGTACC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	253
AccII	CGCG	1 cut(s)	207
AciI	CCGC	4 cut(s)	5, 8, 62, 109
AclWI	GGATC	5 cut(s)	116, 129, 143, 156, 483
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	2 cut(s)	98, 255
AfiI	CCNNNNNNNGG	5 cut(s)	64, 145, 263, 407, 548
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	6 cut(s)	234, 284, 314, 418, 492, 574
AjnI	CCWGG	3 cut(s)	14, 195, 470
AluBI	AGCT	7 cut(s)	114, 144, 271, 295, 329, 334, 360
AluI	AGCT	7 cut(s)	114, 144, 271, 295, 329, 334, 360
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	5 cut(s)	116, 129, 143, 156, 483
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	1 cut(s)	461
Asp718I	GGTACC	1 cut(s)	253
AspS9I	GGNCC	4 cut(s)	390, 461, 551, 605
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	3 cut(s)	390, 551, 605
BamHI	GGATCC	2 cut(s)	121, 148
BanI	GGYRCC	1 cut(s)	253
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
Bbv12I	GWGCWC	1 cut(s)	564
BccI	CCATC	1 cut(s)	600
BciT130I	CCWGG	3 cut(s)	16, 197, 472
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	1 cut(s)	263
BfuAI	ACCTGC	2 cut(s)	141, 197
BisI	GCNGC	2 cut(s)	6, 9
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	2 cut(s)	7, 10
Bme1390I	CCNGG	3 cut(s)	16, 197, 472
Bme18I	GGWCC	3 cut(s)	390, 551, 605
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	4 cut(s)	390, 461, 551, 605
BmiI	GGNNCC	4 cut(s)	123, 150, 255, 391
BmrFI	CCNGG	3 cut(s)	16, 197, 472
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	2 cut(s)	20, 286
BmuI	ACTGGG	1 cut(s)	468
BpmI	CTGGAG	2 cut(s)	122, 311
Bpu10I	CCTNAGC	1 cut(s)	44
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	470, 471
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 145, 263, 407, 548
Bse1I	ACTGG	2 cut(s)	463, 546
BseBI	CCWGG	3 cut(s)	16, 197, 472
BseDI	CCNNGG	2 cut(s)	470, 471
BseGI	GGATG	3 cut(s)	11, 514, 564
BseLI	CCNNNNNNNGG	5 cut(s)	64, 145, 263, 407, 548
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	463, 546
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	463
BshNI	GGYRCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	564
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	3 cut(s)	403, 547, 633
BslI	CCNNNNNNNGG	5 cut(s)	64, 145, 263, 407, 548
BsmAI	GTCTC	1 cut(s)	443
BsmBI	CGTCTC	1 cut(s)	443
BsmFI	GGGAC	3 cut(s)	403, 547, 633
BsnI	GGCC	1 cut(s)	463
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	121, 148, 475
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	4 cut(s)	5, 8, 62, 109
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	4 cut(s)	123, 150, 255, 391
BspMI	ACCTGC	2 cut(s)	141, 197
BspPI	GGATC	5 cut(s)	116, 129, 143, 156, 483
BspQI	GCTCTTC	1 cut(s)	341
BspT107I	GGYRCC	1 cut(s)	253
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	463, 546
BssECI	CCNNGG	2 cut(s)	470, 471
BssMI	GATC	3 cut(s)	121, 148, 475
Bst2UI	CCWGG	3 cut(s)	16, 197, 472
Bst6I	CTCTTC	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	44, 330
BstEII	GGTNACC	1 cut(s)	338
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstF5I	GGATG	3 cut(s)	11, 514, 564
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	3 cut(s)	124, 151, 478
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	3 cut(s)	121, 148, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	357
BstNI	CCWGG	3 cut(s)	16, 197, 472
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	14, 195, 470
BstUI	CGCG	1 cut(s)	207
BstX2I	RGATCY	3 cut(s)	121, 148, 475
BstYI	RGATCY	3 cut(s)	121, 148, 475
BsuRI	GGCC	1 cut(s)	463
BtsCI	GGATG	3 cut(s)	11, 514, 564
BtsIMutI	CAGTG	1 cut(s)	553
BveI	ACCTGC	2 cut(s)	141, 197
Cfr13I	GGNCC	4 cut(s)	390, 461, 551, 605
CseI	GACGC	2 cut(s)	98, 425
Csp6I	GTAC	2 cut(s)	97, 254
CviQI	GTAC	2 cut(s)	97, 254
DdeI	CTNAG	2 cut(s)	44, 330
DpnI	GATC	3 cut(s)	123, 150, 477
DpnII	GATC	3 cut(s)	121, 148, 475
DrdI	GACNNNNNNGTC	1 cut(s)	603
DseDI	GACNNNNNNGTC	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
EciI	GGCGGA	1 cut(s)	124
Eco47I	GGWCC	3 cut(s)	390, 551, 605
Eco57I	CTGAAG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	213
Eco91I	GGTNACC	1 cut(s)	338
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoO65I	GGTNACC	1 cut(s)	338
EcoRII	CCWGG	3 cut(s)	14, 195, 470
Esp3I	CGTCTC	1 cut(s)	443
FaiI	YATR	5 cut(s)	52, 370, 372, 383, 529
FaqI	GGGAC	3 cut(s)	403, 547, 633
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	2 cut(s)	521, 551
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	2 cut(s)	6, 9
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	2 cut(s)	122, 311
HaeIII	GGCC	1 cut(s)	463
HapII	CCGG	1 cut(s)	106
HgaI	GACGC	2 cut(s)	98, 425
HincII	GTYRAC	2 cut(s)	163, 456
HindII	GTYRAC	2 cut(s)	163, 456
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	538, 597
HpaI	GTTAAC	1 cut(s)	456
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	4 cut(s)	99, 163, 456, 551
Hpy188I	TCNGA	2 cut(s)	82, 121
Hpy188III	TCNNGA	5 cut(s)	125, 139, 243, 290, 608
Hpy8I	GTNNAC	4 cut(s)	99, 163, 456, 551
Hpy99I	CGWCG	2 cut(s)	92, 406
HpyAV	CCTTC	3 cut(s)	68, 77, 596
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	4 cut(s)	75, 171, 192, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	357
HpyF3I	CTNAG	2 cut(s)	44, 330
HpySE526I	ACGT	1 cut(s)	101
KpnI	GGTACC	1 cut(s)	257
KspAI	GTTAAC	1 cut(s)	456
Kzo9I	GATC	3 cut(s)	121, 148, 475
LguI	GCTCTTC	1 cut(s)	341
LmnI	GCTCC	3 cut(s)	111, 141, 292
LweI	GCATC	2 cut(s)	20, 286
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	3 cut(s)	208, 338, 629
MalI	GATC	3 cut(s)	123, 150, 477
MboI	GATC	3 cut(s)	121, 148, 475
MboII	GAAGA	4 cut(s)	13, 16, 272, 358
MflI	RGATCY	3 cut(s)	121, 148, 475
MhlI	GDGCHC	1 cut(s)	564
MluCI	AATT	3 cut(s)	229, 413, 611
MlyI	GAGTC	1 cut(s)	591
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	6 cut(s)	65, 167, 248, 362, 408, 506
MseI	TTAA	1 cut(s)	455
MspA1I	CMGCKG	2 cut(s)	64, 329
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	3 cut(s)	16, 197, 472
MvaI	CCWGG	3 cut(s)	16, 197, 472
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	357
NdeII	GATC	3 cut(s)	121, 148, 475
NlaIV	GGNNCC	4 cut(s)	123, 150, 255, 391
PaqCI	CACCTGC	1 cut(s)	197
PasI	CCCWGGG	1 cut(s)	471
PciSI	GCTCTTC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	538
PkrI	GCNGC	2 cut(s)	7, 10
PleI	GAGTC	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	591
Psp6I	CCWGG	3 cut(s)	14, 195, 470
PspEI	GGTNACC	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	3 cut(s)	14, 195, 470
PspN4I	GGNNCC	4 cut(s)	123, 150, 255, 391
PspPI	GGNCC	4 cut(s)	390, 461, 551, 605
PsuI	RGATCY	3 cut(s)	121, 148, 475
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	98, 255
RsaNI	GTAC	2 cut(s)	97, 254
SapI	GCTCTTC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	3 cut(s)	121, 148, 475
Sau96I	GGNCC	4 cut(s)	390, 461, 551, 605
SchI	GAGTC	1 cut(s)	591
ScrFI	CCNGG	3 cut(s)	16, 197, 472
SduI	GDGCHC	1 cut(s)	564
SfaNI	GCATC	2 cut(s)	20, 286
SinI	GGWCC	3 cut(s)	390, 551, 605
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	229, 413, 611
SsiI	CCGC	4 cut(s)	5, 8, 62, 109
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	3 cut(s)	14, 195, 470
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	595, 600
TasI	AATT	3 cut(s)	229, 413, 611
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TscAI	CASTG	1 cut(s)	553
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	1 cut(s)	553
VpaK11BI	GGWCC	3 cut(s)	390, 551, 605
XagI	CCTNNNNNAGG	1 cut(s)	261
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.