Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003368.1

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

2576 .. 4708

Gene Structure 2133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003368.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggatccacataacgtgctccaaagctgggatgccaacattatcacaccctacagtacctggtttggtattaggtgcaaccaagacaataaggtttttgtagtcgacttacgtagcgcaatcctacctggaaatctagtacctgaactcggactgcttctaactttaaaatatttgagattgggtcaaaataatattgcaagaaccattccaactgagcttggtaacctaaagagtcgcaaccttccagcaggcaatagaggtgtggggcttccggatggaagctggaggcatcccaaaccgcttctgggtagtgatcgaggtcggaggagatcggggttgaaggatagtcgccagagacctcatctgcaactgcaacgttttggacagcgctacaacctcatcgccggcggttccaccctactgcaaattggttggcctttggcctctccgacgctgtgtgactggctatcggacgggaaatttgatactattgctcgaggatggttttttcttgggagtgtttgcttggagtttcgcaagatggttttggcggcagatttcggtgcgaggtatcggagacgctgtggttgggttatacaaactttggtttgctttcctcgaaagccggtgacatgggttgtgaaggtgctgcatcaatggcgacgtaggtcgtgtgattttagtttcctgacggcggctgtcgtgtcagaaggggttgaggcggtgctgaaacttttgttatatatgttcgattacattgtggaggggaaggagattgggcctgggtcaagcccagttttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002684 GO:0002831 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009593 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009741 GO:0009742 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0010262 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0032101 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0040008 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043401 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045088 GO:0045089 GO:0046983 GO:0048316 GO:0048518 GO:0048545 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0140096 GO:1900150 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

268

Amino Acids

30.31

Weight (kDa)

10.07

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	5 cut(s)	302, 411, 554, 698, 725
AclI	AACGTT	1 cut(s)	379
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	482
AfaI	GTAC	2 cut(s)	58, 141
AfeI	AGCGCT	1 cut(s)	392
AfiI	CCNNNNNNNGG	4 cut(s)	28, 149, 308, 697
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	3 cut(s)	59, 127, 784
AluBI	AGCT	3 cut(s)	27, 220, 285
AluI	AGCT	3 cut(s)	27, 220, 285
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	352, 574
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	60
Ama87I	CYCGRG	1 cut(s)	498
Aor13HI	TCCGGA	1 cut(s)	274
Aor51HI	AGCGCT	1 cut(s)	392
AoxI	GGCC	3 cut(s)	437, 444, 782
ApeKI	GCWGC	1 cut(s)	652
ApoI	RAATTY	1 cut(s)	482
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
AspLEI	GCGC	2 cut(s)	119, 393
AspS9I	GGNCC	1 cut(s)	782
AsuHPI	GGTGA	1 cut(s)	643
AvaI	CYCGRG	1 cut(s)	498
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	639
BccI	CCATC	3 cut(s)	272, 498, 538
BceAI	ACGGC	1 cut(s)	711
BciT130I	CCWGG	3 cut(s)	61, 129, 786
BcoDI	GTCTC	2 cut(s)	352, 574
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	394
BisI	GCNGC	3 cut(s)	555, 653, 699
BlsI	GCNGC	3 cut(s)	556, 654, 700
Bme1390I	CCNGG	3 cut(s)	61, 129, 786
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	782
BmiI	GGNNCC	2 cut(s)	6, 415
BmrFI	CCNGG	3 cut(s)	61, 129, 786
BmrI	ACTGGG	1 cut(s)	791
BmsI	GCATC	3 cut(s)	22, 301, 664
BmuI	ACTGGG	1 cut(s)	791
BoxI	GACNNNNGTC	1 cut(s)	670
BpmI	CTGGAG	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	785
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 149, 308, 697
Bse118I	RCCGGY	2 cut(s)	407, 628
Bse1I	ACTGG	2 cut(s)	470, 797
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	3 cut(s)	61, 129, 786
BseDI	CCNNGG	1 cut(s)	785
BseGI	GGATG	4 cut(s)	37, 283, 292, 509
BseLI	CCNNNNNNNGG	4 cut(s)	28, 149, 308, 697
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	470, 797
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	639
BseYI	CCCAGC	1 cut(s)	27
BshFI	GGCC	3 cut(s)	439, 446, 784
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	3 cut(s)	275, 408, 629
BslI	CCNNNNNNNGG	4 cut(s)	28, 149, 308, 697
BsmAI	GTCTC	2 cut(s)	352, 574
BsmBI	CGTCTC	1 cut(s)	574
BsnI	GGCC	3 cut(s)	439, 446, 784
Bso31I	GGTCTC	1 cut(s)	352
BsoBI	CYCGRG	1 cut(s)	498
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	4, 316, 332
BspACI	CCGC	5 cut(s)	302, 411, 554, 698, 725
BspANI	GGCC	3 cut(s)	439, 446, 784
BspCNI	CTCAG	1 cut(s)	208
BspEI	TCCGGA	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	6, 415
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	352
BsrFI	RCCGGY	2 cut(s)	407, 628
BsrI	ACTGG	2 cut(s)	470, 797
BssAI	RCCGGY	2 cut(s)	407, 628
BssECI	CCNNGG	1 cut(s)	785
BssMI	GATC	3 cut(s)	4, 316, 332
Bst2UI	CCWGG	3 cut(s)	61, 129, 786
Bst4CI	ACNGT	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	253, 409
BstDEI	CTNAG	1 cut(s)	216
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	4 cut(s)	37, 283, 292, 509
BstH2I	RGCGCY	1 cut(s)	394
BstHHI	GCGC	2 cut(s)	119, 393
BstKTI	GATC	3 cut(s)	7, 319, 335
BstMAI	GTCTC	2 cut(s)	352, 574
BstMBI	GATC	3 cut(s)	4, 316, 332
BstMWI	GCNNNNNNNGC	1 cut(s)	661
BstNI	CCWGG	3 cut(s)	61, 129, 786
BstPAI	GACNNNNGTC	1 cut(s)	670
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	3 cut(s)	59, 127, 784
BstSFI	CTRYAG	1 cut(s)	52
BstSNI	TACGTA	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	639
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	439, 446, 784
BtgZI	GCGATG	1 cut(s)	388
BtsCI	GGATG	4 cut(s)	37, 283, 292, 509
Cac8I	GCNNGC	2 cut(s)	253, 409
CaiI	CAGNNNCTG	1 cut(s)	60
CfoI	GCGC	2 cut(s)	119, 393
Cfr10I	RCCGGY	2 cut(s)	407, 628
Cfr13I	GGNCC	1 cut(s)	782
CseI	GACGC	2 cut(s)	463, 591
CsiI	ACCWGGT	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	57, 140
CviAII	CATG	1 cut(s)	636
CviQI	GTAC	2 cut(s)	57, 140
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	3 cut(s)	6, 318, 334
DpnII	GATC	3 cut(s)	4, 316, 332
DraI	TTTAAA	1 cut(s)	168
Eco105I	TACGTA	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	352
Eco47III	AGCGCT	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	498
Eco91I	GGTNACC	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	224
EcoRII	CCWGG	3 cut(s)	59, 127, 784
Esp3I	CGTCTC	1 cut(s)	574
FaeI	CATG	1 cut(s)	639
FaiI	YATR	6 cut(s)	12, 599, 637, 745, 747, 749
FatI	CATG	1 cut(s)	635
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	555, 653, 699
FokI	GGATG	4 cut(s)	44, 279, 290, 516
Fsp4HI	GCNGC	3 cut(s)	555, 653, 699
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	2 cut(s)	118, 392
GluI	GCNGC	3 cut(s)	555, 653, 699
GsaI	CCCAGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	307
HaeII	RGCGCY	1 cut(s)	394
HaeIII	GGCC	3 cut(s)	439, 446, 784
HapII	CCGG	3 cut(s)	275, 408, 629
HgaI	GACGC	2 cut(s)	463, 591
HhaI	GCGC	2 cut(s)	119, 393
Hin1II	CATG	1 cut(s)	639
Hin6I	GCGC	2 cut(s)	117, 391
HinP1I	GCGC	2 cut(s)	117, 391
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	3 cut(s)	275, 408, 629
HphI	GGTGA	1 cut(s)	643
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	7 cut(s)	152, 327, 453, 475, 579, 712, 806
Hpy188III	TCNNGA	2 cut(s)	275, 691
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	2 cut(s)	457, 669
HpyAV	CCTTC	5 cut(s)	254, 337, 640, 707, 766
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	4 cut(s)	15, 112, 379, 667
HpyCH4V	TGCA	6 cut(s)	78, 200, 370, 376, 427, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	661
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	4 cut(s)	15, 112, 379, 667
Hsp92II	CATG	1 cut(s)	639
HspAI	GCGC	2 cut(s)	117, 391
Kpn2I	TCCGGA	1 cut(s)	274
KroI	GCCGGC	1 cut(s)	407
KroNI	GCCGGC	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	4, 316, 332
LmnI	GCTCC	1 cut(s)	24
Lsp1109I	GCAGC	1 cut(s)	639
LweI	GCATC	3 cut(s)	22, 301, 664
MabI	ACCWGGT	1 cut(s)	59
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	4 cut(s)	15, 112, 379, 667
MaeIII	GTNAC	3 cut(s)	224, 461, 631
MalI	GATC	3 cut(s)	6, 318, 334
MboI	GATC	3 cut(s)	4, 316, 332
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	2 cut(s)	429, 482
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	3 cut(s)	236, 305, 476
MreI	CGCCGGCG	1 cut(s)	407
MroI	TCCGGA	1 cut(s)	274
MroNI	GCCGGC	1 cut(s)	407
MseI	TTAA	1 cut(s)	167
MspI	CCGG	3 cut(s)	275, 408, 629
MspR9I	CCNGG	3 cut(s)	61, 129, 786
MvaI	CCWGG	3 cut(s)	61, 129, 786
MwoI	GCNNNNNNNGC	1 cut(s)	661
NaeI	GCCGGC	1 cut(s)	409
NdeII	GATC	3 cut(s)	4, 316, 332
NgoMIV	GCCGGC	1 cut(s)	407
NlaIII	CATG	1 cut(s)	639
NlaIV	GGNNCC	2 cut(s)	6, 415
NmuCI	GTSAC	2 cut(s)	461, 631
PaeR7I	CTCGAG	1 cut(s)	498
PdiI	GCCGGC	1 cut(s)	409
PkrI	GCNGC	3 cut(s)	556, 654, 700
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Ppu21I	YACGTR	1 cut(s)	113
PshAI	GACNNNNGTC	1 cut(s)	670
Psp1406I	AACGTT	1 cut(s)	379
Psp6I	CCWGG	3 cut(s)	59, 127, 784
PspEI	GGTNACC	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	3 cut(s)	59, 127, 784
PspN4I	GGNNCC	2 cut(s)	6, 415
PspPI	GGNCC	1 cut(s)	782
PspXI	VCTCGAGB	1 cut(s)	498
PstNI	CAGNNNCTG	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	58, 141
RsaNI	GTAC	2 cut(s)	57, 140
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	3 cut(s)	555, 653, 699
Sau3AI	GATC	3 cut(s)	4, 316, 332
Sau96I	GGNCC	1 cut(s)	782
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	3 cut(s)	61, 129, 786
SduI	GDGCHC	1 cut(s)	21
SexAI	ACCWGGT	1 cut(s)	59
SfaNI	GCATC	3 cut(s)	22, 301, 664
SfcI	CTRYAG	1 cut(s)	52
Sfr274I	CTCGAG	1 cut(s)	498
SgrAI	CRCCGGYG	1 cut(s)	407
SlaI	CTCGAG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
SnaBI	TACGTA	1 cut(s)	113
Sse9I	AATT	2 cut(s)	429, 482
SsiI	CCGC	5 cut(s)	302, 411, 554, 698, 725
SspI	AATATT	2 cut(s)	173, 196
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	3 cut(s)	59, 127, 784
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	4 cut(s)	18, 115, 382, 670
TaqI	TCGA	5 cut(s)	105, 319, 499, 622, 753
TasI	AATT	2 cut(s)	429, 482
TauI	GCSGC	2 cut(s)	557, 701
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TseFI	GTSAC	2 cut(s)	461, 631
TseI	GCWGC	1 cut(s)	652
Tsp45I	GTSAC	2 cut(s)	461, 631
XapI	RAATTY	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XhoI	CTCGAG	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.