Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

9135298 .. 9136132

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGACAACGGCGACAACATGCTGGATCCTATTGGCTCTAACTCTAAGCGCAAGTCTCATTCCTGGATCACACCCTCTCTCAGAGAAAGATGCTTTGATCGCGTTTAAGAAGAGCTTAACTGATCCTCTAAACGTGCTCAAGACTTGGGATGCCAGAAAACCAAACCCATGCAGTTGGGCACACGTCACCTGCAATTCACAAAATAAGGTCATCGGATTGTTCTTGATCGGCAGCCAACTCTCTGGACATCTGGTACCTGAACTCGGATCGCTTTCGTCTCTTGTGCAGATGATTATGGATCAGAATGAGATCTCAGGACCAATTCCAGCTGAGCTTGGTAATCTAAAGGCACTCCACACTATGATATTAAGTTATAATGGATTATCAGGCAGCATTCCTCCTTCATTTGGTAATTTACAATCACTTACTACCCTTGGTCTGGATAATAACCAATTATCTGGGAGAATCCCTTCCCAAATTGCAAACATTAGAACCCTCAAAATTGCCGCTTTCAACGACAACAAAGCTTTATGTTGGGAATTTCGGCCCACACCAGTATTTAGAGGCGATTACCCAATTTGCCCGAAGAAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8

Protein Analysis

199

Amino Acids

21.46

Weight (kDa)

8.87

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	27 - 65	6.3e-14	Leucine rich repeat N-terminal domain
LRR_14	PF23598	80 - 167	1.5e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AarI	CACCTGC	1 cut(s)	197
Acc36I	ACCTGC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	253
AccII	CGCG	1 cut(s)	101
AciI	CCGC	1 cut(s)	507
AclWI	GGATC	6 cut(s)	19, 32, 73, 116, 274, 306
AcsI	RAATTY	1 cut(s)	539
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	3 cut(s)	263, 407, 439
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	514
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	4 cut(s)	114, 329, 334, 527
AluI	AGCT	4 cut(s)	114, 329, 334, 527
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	2 cut(s)	59, 282
AlwI	GGATC	6 cut(s)	19, 32, 73, 116, 274, 306
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	2 cut(s)	231, 390
ApoI	RAATTY	1 cut(s)	539
Asp700I	GAANNNNTTC	1 cut(s)	469
Asp718I	GGTACC	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	317, 546
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	243, 402
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	59, 282
BfuAI	ACCTGC	1 cut(s)	197
BglII	AGATCT	1 cut(s)	309
BisI	GCNGC	3 cut(s)	232, 391, 507
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	3 cut(s)	233, 392, 508
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	317, 546
BmiI	GGNNCC	2 cut(s)	26, 255
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	79, 139
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 407, 439
Bse1I	ACTGG	1 cut(s)	554
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	3 cut(s)	263, 407, 439
BseMII	CTCAG	3 cut(s)	93, 321, 327
BseNI	ACTGG	1 cut(s)	554
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	243, 402
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	547
BshNI	GGYRCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	138
BslI	CCNNNNNNNGG	3 cut(s)	263, 407, 439
BsmAI	GTCTC	2 cut(s)	59, 282
BsmBI	CGTCTC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	547
Bsp1286I	GDGCHC	2 cut(s)	138, 181
Bsp143I	GATC	8 cut(s)	24, 65, 96, 121, 225, 266, 298, 309
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	1 cut(s)	507
BspANI	GGCC	1 cut(s)	547
BspCNI	CTCAG	3 cut(s)	92, 322, 326
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	2 cut(s)	26, 255
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	6 cut(s)	19, 32, 73, 116, 274, 306
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	554
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	8 cut(s)	24, 65, 96, 121, 225, 266, 298, 309
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	63
Bst6I	CTCTTC	1 cut(s)	104
BstDEI	CTNAG	4 cut(s)	44, 79, 313, 330
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	8 cut(s)	27, 68, 99, 124, 228, 269, 301, 312
BstMAI	GTCTC	2 cut(s)	59, 282
BstMBI	GATC	8 cut(s)	24, 65, 96, 121, 225, 266, 298, 309
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	181
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	243, 402
BstX2I	RGATCY	2 cut(s)	24, 309
BstXI	CCANNNNNNTGG	3 cut(s)	174, 242, 458
BstYI	RGATCY	2 cut(s)	24, 309
BsuRI	GGCC	1 cut(s)	547
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	197
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	317, 546
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	2 cut(s)	18, 168
CviJI	RGCY	7 cut(s)	35, 114, 234, 329, 334, 527, 547
CviKI_1	RGCY	7 cut(s)	35, 114, 234, 329, 334, 527, 547
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	4 cut(s)	44, 79, 313, 330
DpnI	GATC	8 cut(s)	26, 67, 98, 123, 227, 268, 300, 311
DpnII	GATC	8 cut(s)	24, 65, 96, 121, 225, 266, 298, 309
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	2 cut(s)	21, 171
FaiI	YATR	6 cut(s)	19, 169, 296, 362, 375, 532
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FatI	CATG	2 cut(s)	17, 167
Fnu4HI	GCNGC	3 cut(s)	232, 391, 507
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	3 cut(s)	232, 391, 507
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	3 cut(s)	232, 391, 507
HaeIII	GGCC	1 cut(s)	547
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	21, 171
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	1 cut(s)	465
HphI	GGTGA	1 cut(s)	178
Hpy188I	TCNGA	4 cut(s)	82, 215, 266, 303
Hpy188III	TCNNGA	5 cut(s)	139, 223, 243, 315, 440
HpyAV	CCTTC	2 cut(s)	411, 480
HpyCH4IV	ACGT	2 cut(s)	132, 183
HpyCH4V	TGCA	4 cut(s)	171, 192, 286, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	4 cut(s)	44, 79, 313, 330
HpySE526I	ACGT	2 cut(s)	132, 183
Hsp92II	CATG	2 cut(s)	21, 171
HspAI	GCGC	1 cut(s)	48
KpnI	GGTACC	1 cut(s)	257
Kzo9I	GATC	8 cut(s)	24, 65, 96, 121, 225, 266, 298, 309
LguI	GCTCTTC	1 cut(s)	104
Lsp1109I	GCAGC	2 cut(s)	243, 402
LweI	GCATC	2 cut(s)	79, 139
MaeII	ACGT	2 cut(s)	132, 183
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	8 cut(s)	26, 67, 98, 123, 227, 268, 300, 311
MboI	GATC	8 cut(s)	24, 65, 96, 121, 225, 266, 298, 309
MboII	GAAGA	1 cut(s)	121
MflI	RGATCY	2 cut(s)	24, 309
MhlI	GDGCHC	2 cut(s)	138, 181
MluCI	AATT	8 cut(s)	193, 321, 412, 452, 477, 501, 539, 576
MnlI	CCTC	5 cut(s)	84, 135, 408, 506, 557
MroXI	GAANNNNTTC	1 cut(s)	469
MseI	TTAA	3 cut(s)	105, 116, 368
MspA1I	CMGCKG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	8 cut(s)	24, 65, 96, 121, 225, 266, 298, 309
NlaIII	CATG	2 cut(s)	21, 171
NlaIV	GGNNCC	2 cut(s)	26, 255
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	21
PaqCI	CACCTGC	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	104
PctI	GAATGC	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	465
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	233, 392, 508
PsiI	TTATAA	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	26, 255
PspPI	GGNCC	2 cut(s)	317, 546
PsuI	RGATCY	2 cut(s)	24, 309
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	3 cut(s)	105, 116, 368
SatI	GCNGC	3 cut(s)	232, 391, 507
Sau3AI	GATC	8 cut(s)	24, 65, 96, 121, 225, 266, 298, 309
Sau96I	GGNCC	2 cut(s)	317, 546
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	2 cut(s)	138, 181
SetI	ASST	9 cut(s)	116, 135, 186, 191, 210, 259, 331, 336, 529
SfaNI	GCATC	2 cut(s)	79, 139
SinI	GGWCC	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	8 cut(s)	193, 321, 412, 452, 477, 501, 539, 576
SsiI	CCGC	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	433
TaiI	ACGT	2 cut(s)	135, 186
TasI	AATT	8 cut(s)	193, 321, 412, 452, 477, 501, 539, 576
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	1 cut(s)	465
Tru1I	TTAA	3 cut(s)	105, 116, 368
Tru9I	TTAA	3 cut(s)	105, 116, 368
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	231, 390
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	1 cut(s)	539
XceI	RCATGY	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.