Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

43773967 .. 43774527

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG264000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGACGATGCCGAGCACTTTCTTGTTATTTGCCGTAACCCTAATCCTGAGTGTAGACCTCCTCACTGCCGTGGTGTACCCTGACCCTGAAGTGGCCGCTTTGTCCGCGCTGAAGAATAGCTTATCTGATCCAAACAAGGCGCTCCAGTCGTGGGATACAGAGCTTGTCGACCCTTGCACTTGGTTCCACATTACCTGCAACGATCAGAGCTACGTTACCCGAGTCGACCTAGGTTTGCAAAACCTCTCTGGCAAATTGGTACCTGAACTTGGAAACCTAACTCAACTTCGATATCTAGTACTCTTCAAGAACAACATTGAAGGAAGTATTCCAGCGGAGCTCGGTAAGCTGACGAACCTCGATGCCATGCACTTGTCTGATAACAACCTCTCGGGGACCTTACCTTCTTCATTGGAGAACTTGAAATTACTTAAGATTCTAAATCTCAGTAACAACAAGTTTTTATCTGGGGCAGTCCCCCCGGGTCTTATTCATGTTCCGCGCCTCGACATCTCGAACACAAGTTTAACAATACCCCCTACCGGAAGGCCATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

186

Amino Acids

20.25

Weight (kDa)

5.24

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	28 - 67	2.6e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	82 - 154	2.5e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	203
Acc65I	GGTACC	1 cut(s)	259
AccB1I	GGYRCC	1 cut(s)	259
AccI	GTMKAC	3 cut(s)	54, 168, 225
AccII	CGCG	2 cut(s)	107, 502
AciI	CCGC	4 cut(s)	96, 105, 335, 500
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	93
AcuI	CTGAAG	2 cut(s)	108, 131
AfaI	GTAC	3 cut(s)	77, 261, 300
AfiI	CCNNNNNNNGG	4 cut(s)	91, 151, 269, 542
AflII	CTTAAG	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	307, 320, 424
AleI	CACNNNNGTG	1 cut(s)	68
AluBI	AGCT	5 cut(s)	120, 163, 210, 340, 349
AluI	AGCT	5 cut(s)	120, 163, 210, 340, 349
Alw21I	GWGCWC	2 cut(s)	17, 342
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	3 cut(s)	219, 391, 481
AoxI	GGCC	2 cut(s)	93, 548
Asp718I	GGTACC	1 cut(s)	259
AspA2I	CCTAGG	1 cut(s)	229
AspLEI	GCGC	3 cut(s)	109, 142, 504
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	2 cut(s)	482, 483
AvaI	CYCGRG	3 cut(s)	219, 391, 481
AvaII	GGWCC	1 cut(s)	396
AvrII	CCTAGG	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	2 cut(s)	17, 342
BceAI	ACGGC	2 cut(s)	17, 53
BciVI	GTATCC	1 cut(s)	148
BcnI	CCSGG	2 cut(s)	482, 483
BfaI	CTAG	2 cut(s)	230, 296
BfoI	RGCGCY	1 cut(s)	143
BfrI	CTTAAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	148
BisI	GCNGC	1 cut(s)	96
BlnI	CCTAGG	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	97
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	2 cut(s)	482, 483
Bme18I	GGWCC	1 cut(s)	396
BmeT110I	CYCGRG	3 cut(s)	219, 391, 481
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	3 cut(s)	185, 261, 397
BmrFI	CCNGG	2 cut(s)	482, 483
BmsI	GCATC	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	128
BpuMI	CCSGG	2 cut(s)	482, 483
BsaJI	CCNNGG	4 cut(s)	69, 229, 480, 481
BsaWI	WCCGGW	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 151, 269, 542
Bse1I	ACTGG	1 cut(s)	145
BseDI	CCNNGG	4 cut(s)	69, 229, 480, 481
BseLI	CCNNNNNNNGG	4 cut(s)	91, 151, 269, 542
BseMII	CTCAG	2 cut(s)	38, 460
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	50
Bsh1236I	CGCG	2 cut(s)	107, 502
BshFI	GGCC	2 cut(s)	95, 550
BshNI	GGYRCC	1 cut(s)	259
BsiHKAI	GWGCWC	2 cut(s)	17, 342
BsiHKCI	CYCGRG	3 cut(s)	219, 391, 481
BsiSI	CCGG	2 cut(s)	482, 543
BslFI	GGGAC	2 cut(s)	409, 461
BslI	CCNNNNNNNGG	4 cut(s)	91, 151, 269, 542
BsmFI	GGGAC	2 cut(s)	409, 461
BsnI	GGCC	2 cut(s)	95, 550
BsoBI	CYCGRG	3 cut(s)	219, 391, 481
Bsp1286I	GDGCHC	2 cut(s)	17, 342
Bsp143I	GATC	2 cut(s)	127, 202
BspACI	CCGC	4 cut(s)	96, 105, 335, 500
BspANI	GGCC	2 cut(s)	95, 550
BspCNI	CTCAG	2 cut(s)	39, 459
BspFNI	CGCG	2 cut(s)	107, 502
BspLI	GGNNCC	3 cut(s)	185, 261, 397
BspMI	ACCTGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	259
BspTI	CTTAAG	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	4 cut(s)	69, 229, 480, 481
BssMI	GATC	2 cut(s)	127, 202
BssT1I	CCWWGG	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	308
BstAFI	CTTAAG	1 cut(s)	431
BstDEI	CTNAG	2 cut(s)	47, 446
BstDSI	CCRYGG	1 cut(s)	69
BstFNI	CGCG	2 cut(s)	107, 502
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	3 cut(s)	109, 142, 504
BstKTI	GATC	2 cut(s)	130, 205
BstMBI	GATC	2 cut(s)	127, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 346
BstSCI	CCNGG	2 cut(s)	480, 481
BstUI	CGCG	2 cut(s)	107, 502
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	95, 550
BtgI	CCRYGG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	203
CfoI	GCGC	3 cut(s)	109, 142, 504
Cfr13I	GGNCC	1 cut(s)	396
Cfr9I	CCCGGG	1 cut(s)	481
Csp6I	GTAC	3 cut(s)	76, 260, 299
CviAII	CATG	2 cut(s)	367, 494
CviJI	RGCY	7 cut(s)	95, 120, 163, 210, 340, 349, 550
CviKI_1	RGCY	7 cut(s)	95, 120, 163, 210, 340, 349, 550
CviQI	GTAC	3 cut(s)	76, 260, 299
DdeI	CTNAG	2 cut(s)	47, 446
DpnI	GATC	2 cut(s)	129, 204
DpnII	GATC	2 cut(s)	127, 202
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Ecl136II	GAGCTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	342
Eco32I	GATATC	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	340
Eco57I	CTGAAG	2 cut(s)	108, 131
Eco88I	CYCGRG	3 cut(s)	219, 391, 481
EcoICRI	GAGCTC	1 cut(s)	340
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRV	GATATC	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	2 cut(s)	370, 497
FaiI	YATR	2 cut(s)	368, 495
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	2 cut(s)	409, 461
FatI	CATG	2 cut(s)	366, 493
FblI	GTMKAC	3 cut(s)	54, 168, 225
Fnu4HI	GCNGC	1 cut(s)	96
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	2 cut(s)	230, 296
GlaI	GCGC	3 cut(s)	108, 141, 503
GluI	GCNGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	95, 550
HapII	CCGG	2 cut(s)	482, 543
HhaI	GCGC	3 cut(s)	109, 142, 504
Hin1II	CATG	2 cut(s)	370, 497
Hin6I	GCGC	3 cut(s)	107, 140, 502
HinP1I	GCGC	3 cut(s)	107, 140, 502
HincII	GTYRAC	2 cut(s)	169, 226
HindII	GTYRAC	2 cut(s)	169, 226
HinfI	GANTC	2 cut(s)	222, 436
HpaII	CCGG	2 cut(s)	482, 543
Hpy166II	GTNNAC	4 cut(s)	55, 76, 169, 226
Hpy188I	TCNGA	3 cut(s)	127, 207, 379
Hpy188III	TCNNGA	3 cut(s)	46, 307, 514
Hpy8I	GTNNAC	4 cut(s)	55, 76, 169, 226
HpyAV	CCTTC	3 cut(s)	314, 414, 540
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	4 cut(s)	177, 198, 238, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 346
HpyF3I	CTNAG	2 cut(s)	47, 446
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	370, 497
HspAI	GCGC	3 cut(s)	107, 140, 502
KpnI	GGTACC	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	127, 202
LmnI	GCTCC	2 cut(s)	147, 337
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	230, 296
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	3 cut(s)	34, 214, 449
MalI	GATC	2 cut(s)	129, 204
MboI	GATC	2 cut(s)	127, 202
MboII	GAAGA	3 cut(s)	124, 295, 399
MhlI	GDGCHC	2 cut(s)	17, 342
MluCI	AATT	2 cut(s)	254, 425
MlyI	GAGTC	1 cut(s)	231
MnlI	CCTC	6 cut(s)	68, 71, 254, 368, 398, 515
MseI	TTAA	3 cut(s)	432, 527, 559
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	335
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	2 cut(s)	482, 543
MspR9I	CCNGG	2 cut(s)	482, 483
MvnI	CGCG	2 cut(s)	107, 502
MwoI	GCNNNNNNNGC	2 cut(s)	104, 346
NciI	CCSGG	2 cut(s)	482, 483
NdeII	GATC	2 cut(s)	127, 202
NlaIII	CATG	2 cut(s)	370, 497
NlaIV	GGNNCC	3 cut(s)	185, 261, 397
NmeAIII	GCCGAG	1 cut(s)	36
OliI	CACNNNNGTG	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	342
Psp5II	RGGWCCY	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	185, 261, 397
PspPI	GGNCC	1 cut(s)	396
PspPPI	RGGWCCY	1 cut(s)	396
RsaI	GTAC	3 cut(s)	77, 261, 300
RsaNI	GTAC	3 cut(s)	76, 260, 299
RseI	CAYNNNNRTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	342
SalI	GTCGAC	2 cut(s)	167, 224
SaqAI	TTAA	3 cut(s)	432, 527, 559
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	127, 202
Sau96I	GGNCC	1 cut(s)	396
ScaI	AGTACT	1 cut(s)	300
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	2 cut(s)	482, 483
SduI	GDGCHC	2 cut(s)	17, 342
SfaNI	GCATC	1 cut(s)	352
SinI	GGWCC	1 cut(s)	396
SmaI	CCCGGG	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	2 cut(s)	254, 425
SsiI	CCGC	4 cut(s)	96, 105, 335, 500
SspMI	CTAG	2 cut(s)	230, 296
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	480, 481
StyI	CCWWGG	1 cut(s)	229
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	6 cut(s)	168, 225, 289, 360, 507, 515
TasI	AATT	2 cut(s)	254, 425
TatI	WGTACW	1 cut(s)	298
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	3 cut(s)	432, 527, 559
Tru9I	TTAA	3 cut(s)	432, 527, 559
TscAI	CASTG	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	399, 482
TspMI	CCCGGG	1 cut(s)	481
TspRI	CASTG	1 cut(s)	70
Vha464I	CTTAAG	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	396
XmaI	CCCGGG	1 cut(s)	481
XmaJI	CCTAGG	1 cut(s)	229
XmiI	GTMKAC	3 cut(s)	54, 168, 225
XspI	CTAG	2 cut(s)	230, 296
ZrmI	AGTACT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.