Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

23846392 .. 23846667

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30942

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCAATGGAGATAGCTCCGACTTGCTTGATGTCGTTTACCCTAATCCTTGTCCAAAGTGTAAACTTTGTTCCCTTGGTGTATGGAGCGCCACCCCTCTCGGAGGCAAAAGCTTTACTTGCATTCAAGGAGAGATTAATGGATCCACAAAACGTGCTCCAAAGCTGGGATGCCAACATTATCACACCCTACAGTACCTGGTTTGGTATTAGGTGCAACCAAGACAATAAGGTTTTTGCAGTCGACTTACGTGGGCAATCCTATATGGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

91

Amino Acids

10.27

Weight (kDa)

4.77

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	34 - 73	7e-07	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AclWI	GGATC	2 cut(s)	137, 150
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	2 cut(s)	103, 166
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	3 cut(s)	17, 113, 165
AluI	AGCT	3 cut(s)	17, 113, 165
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	137, 150
AlwNI	CAGNNNCTG	1 cut(s)	198
AseI	ATTAAT	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	199
BfaI	CTAG	1 cut(s)	274
BfmI	CTRYAG	1 cut(s)	190
BfoI	RGCGCY	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	160
BsaAI	YACGTR	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 166
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	2 cut(s)	103, 166
BseMI	GCAATG	1 cut(s)	12
BseYI	CCCAGC	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	103, 166
BsmI	GAATGC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	137, 150
BsrDI	GCAATG	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	251
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	198
CfoI	GCGC	1 cut(s)	91
CsiI	ACCWGGT	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	195
CviJI	RGCY	3 cut(s)	17, 113, 165
CviKI_1	RGCY	3 cut(s)	17, 113, 165
CviQI	GTAC	1 cut(s)	195
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaiI	YATR	3 cut(s)	84, 264, 266
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FblI	GTMKAC	1 cut(s)	243
FokI	GGATG	1 cut(s)	182
FspBI	CTAG	1 cut(s)	274
GlaI	GCGC	1 cut(s)	90
GsaI	CCCAGC	1 cut(s)	169
HaeII	RGCGCY	1 cut(s)	92
HhaI	GCGC	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	111
Hpy166II	GTNNAC	3 cut(s)	39, 64, 244
Hpy188I	TCNGA	2 cut(s)	21, 103
Hpy8I	GTNNAC	3 cut(s)	39, 64, 244
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	2 cut(s)	153, 250
HpyCH4V	TGCA	3 cut(s)	122, 216, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpySE526I	ACGT	2 cut(s)	153, 250
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	3 cut(s)	22, 86, 162
LpnPI	CCDG	3 cut(s)	151, 184, 211
LweI	GCATC	1 cut(s)	160
MabI	ACCWGGT	1 cut(s)	197
MaeI	CTAG	1 cut(s)	274
MaeII	ACGT	2 cut(s)	153, 250
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	2 cut(s)	97, 107
MseI	TTAA	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	199
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	144
PctI	GAATGC	1 cut(s)	122
Ppu21I	YACGTR	1 cut(s)	251
PshBI	ATTAAT	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	144
PsrI	GAACNNNNNNTAC	2 cut(s)	54, 86
PstNI	CAGNNNCTG	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	8 cut(s)	19, 115, 156, 167, 200, 215, 234, 253
SexAI	ACCWGGT	1 cut(s)	197
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	190
SspMI	CTAG	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	2 cut(s)	156, 253
TaqI	TCGA	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
VspI	ATTAAT	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.