Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

24772181 .. 24774380

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033241

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAAGTAGAACCACCGTCATCGTCAGTGGAGAAGTCGTCGACTTCGAATTCGGCGCTGTGGTTCATGTTGTGGTCGGTGGAGAAGTGGTGGCTAGAGGAGGAGGAGTCGGGATCAGCGAGGGAGTCTGGACCGATGAGGGAGGTCCTAACAATGGTGACCACCTTCTGGATGCTGCTGACGTTAACACTAAGCATAATCTTTATGCCCTTGGTGTATGGAGCAAGCAACCCTCATATACAAGCTTTGGATGCGTTTAGGAAGAGCTTAGTGGATCCGAAAAATGTGCTCCGAAGTTGGGATACCAGCCTCGATAACCCATGCACTTGGCGCTACATCCGCTGCAACACCGCCGATGAAACAATCGAGGTGAACTTGAGTTTCACAGACCTCTCCGGACATATGGTACCCGAACTTGGACAACTTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

144

Amino Acids

16.28

Weight (kDa)

4.57

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	80 - 116	2e-10	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	406
AccB1I	GGYRCC	1 cut(s)	406
AccB7I	CCANNNNNTGG	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	395
AciI	CCGC	2 cut(s)	340, 351
AclWI	GGATC	3 cut(s)	121, 269, 282
AcsI	RAATTY	1 cut(s)	49
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	4 cut(s)	154, 168, 298, 416
AluBI	AGCT	2 cut(s)	245, 267
AluI	AGCT	2 cut(s)	245, 267
Alw21I	GWGCWC	1 cut(s)	291
AlwI	GGATC	3 cut(s)	121, 269, 282
Aor13HI	TCCGGA	1 cut(s)	395
ApeKI	GCWGC	2 cut(s)	175, 342
ApoI	RAATTY	1 cut(s)	49
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
Asp718I	GGTACC	1 cut(s)	406
AspLEI	GCGC	2 cut(s)	58, 333
AspS9I	GGNCC	2 cut(s)	131, 145
AsuHPI	GGTGA	2 cut(s)	169, 382
AsuII	TTCGAA	1 cut(s)	47
AvaII	GGWCC	2 cut(s)	131, 145
BamHI	GGATCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	406
BarI	GAAGNNNNNNTAC	2 cut(s)	286, 318
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	162, 329
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciVI	GTATCC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	95
BfoI	RGCGCY	2 cut(s)	59, 334
BfuI	GTATCC	1 cut(s)	295
BisI	GCNGC	2 cut(s)	176, 343
BlsI	GCNGC	2 cut(s)	177, 344
Bme18I	GGWCC	2 cut(s)	131, 145
BmgT120I	GGNCC	2 cut(s)	131, 145
BmiI	GGNNCC	2 cut(s)	276, 408
BmsI	GCATC	2 cut(s)	162, 241
Bpu14I	TTCGAA	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	395
BsaXI	ACNNNNNCTCC	6 cut(s)	23, 53, 74, 92, 104, 122
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 168, 298, 416
BseAI	TCCGGA	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	3 cut(s)	177, 256, 336
BseLI	CCNNNNNNNGG	4 cut(s)	154, 168, 298, 416
BseRI	GAGGAG	3 cut(s)	113, 116, 119
BseXI	GCAGC	2 cut(s)	162, 329
BshNI	GGYRCC	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	396
BslI	CCNNNNNNNGG	4 cut(s)	154, 168, 298, 416
Bsp119I	TTCGAA	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp13I	TCCGGA	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	113, 274
BspACI	CCGC	2 cut(s)	340, 351
BspEI	TCCGGA	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	276, 408
BspPI	GGATC	3 cut(s)	121, 269, 282
BspQI	GCTCTTC	1 cut(s)	257
BspT104I	TTCGAA	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	406
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	113, 274
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	257
BstBI	TTCGAA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	191, 268
BstEII	GGTNACC	1 cut(s)	157
BstF5I	GGATG	3 cut(s)	177, 256, 336
BstH2I	RGCGCY	2 cut(s)	59, 334
BstHHI	GCGC	2 cut(s)	58, 333
BstKTI	GATC	2 cut(s)	116, 277
BstMBI	GATC	2 cut(s)	113, 274
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 330, 339
BstPI	GGTNACC	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	162, 329
BstX2I	RGATCY	1 cut(s)	274
BstXI	CCANNNNNNTGG	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	295
BtsCI	GGATG	3 cut(s)	177, 256, 336
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	226
CfoI	GCGC	2 cut(s)	58, 333
Cfr13I	GGNCC	2 cut(s)	131, 145
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	2 cut(s)	67, 321
CviJI	RGCY	4 cut(s)	94, 245, 267, 309
CviKI_1	RGCY	4 cut(s)	94, 245, 267, 309
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	2 cut(s)	191, 268
DpnI	GATC	2 cut(s)	115, 276
DpnII	GATC	2 cut(s)	113, 274
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	131, 145
Eco91I	GGTNACC	1 cut(s)	157
EcoO109I	RGGNCCY	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	2 cut(s)	70, 324
FaiI	YATR	9 cut(s)	68, 197, 206, 219, 237, 239, 322, 402, 404
FatI	CATG	2 cut(s)	66, 320
FauNDI	CATATG	1 cut(s)	402
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	2 cut(s)	176, 343
FokI	GGATG	3 cut(s)	184, 263, 323
Fsp4HI	GCNGC	2 cut(s)	176, 343
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	2 cut(s)	57, 332
GluI	GCNGC	2 cut(s)	176, 343
HaeII	RGCGCY	2 cut(s)	59, 334
HapII	CCGG	1 cut(s)	396
HhaI	GCGC	2 cut(s)	58, 333
Hin1II	CATG	2 cut(s)	70, 324
Hin6I	GCGC	2 cut(s)	56, 331
HinP1I	GCGC	2 cut(s)	56, 331
HincII	GTYRAC	2 cut(s)	42, 186
HindII	GTYRAC	2 cut(s)	42, 186
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	2 cut(s)	107, 125
HpaI	GTTAAC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	2 cut(s)	169, 382
Hpy166II	GTNNAC	3 cut(s)	42, 186, 373
Hpy188I	TCNGA	2 cut(s)	279, 293
Hpy188III	TCNNGA	4 cut(s)	111, 129, 169, 396
Hpy8I	GTNNAC	3 cut(s)	42, 186, 373
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	2 cut(s)	324, 345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 330, 339
HpyF3I	CTNAG	2 cut(s)	191, 268
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	2 cut(s)	70, 324
HspAI	GCGC	2 cut(s)	56, 331
Kpn2I	TCCGGA	1 cut(s)	395
KpnI	GGTACC	1 cut(s)	410
KspAI	GTTAAC	1 cut(s)	186
Kzo9I	GATC	2 cut(s)	113, 274
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	2 cut(s)	221, 294
LpnPI	CCDG	4 cut(s)	114, 154, 319, 409
Lsp1109I	GCAGC	2 cut(s)	162, 329
LweI	GCATC	2 cut(s)	162, 241
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	115, 276
MboI	GATC	2 cut(s)	113, 274
MboII	GAAGA	1 cut(s)	274
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	1 cut(s)	49
MlyI	GAGTC	2 cut(s)	116, 134
MroI	TCCGGA	1 cut(s)	395
MseI	TTAA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	3 cut(s)	251, 330, 339
NdeI	CATATG	1 cut(s)	402
NdeII	GATC	2 cut(s)	113, 274
NlaIII	CATG	2 cut(s)	70, 324
NlaIV	GGNNCC	2 cut(s)	276, 408
NmuCI	GTSAC	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	2 cut(s)	44, 116
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	177, 344
PleI	GAGTC	2 cut(s)	115, 133
PpsI	GAGTC	2 cut(s)	115, 133
PpuMI	RGGWCCY	1 cut(s)	145
Psp5II	RGGWCCY	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	276, 408
PspPI	GGNCC	2 cut(s)	131, 145
PspPPI	RGGWCCY	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SalI	GTCGAC	1 cut(s)	40
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	2 cut(s)	176, 343
Sau3AI	GATC	2 cut(s)	113, 274
Sau96I	GGNCC	2 cut(s)	131, 145
SchI	GAGTC	2 cut(s)	116, 134
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	7 cut(s)	147, 167, 185, 247, 269, 372, 393
SfaNI	GCATC	2 cut(s)	162, 241
SfuI	TTCGAA	1 cut(s)	47
SinI	GGWCC	2 cut(s)	131, 145
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	2 cut(s)	340, 351
SspMI	CTAG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	18
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	4 cut(s)	41, 47, 312, 366
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	175, 342
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	55, 372
TspRI	CASTG	1 cut(s)	33
Van91I	CCANNNNNTGG	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	131, 145
XapI	RAATTY	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	41
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.