Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

50222490 .. 50227975

Gene Structure 5486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G031040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCGATGGCGGCGAGGTTTTGGTTGTTGAGCCTAACCCTAAGTGTAAGCGTGGTTGGGTTGGTGCGCGGTAACTCGGAATCAGACGCTTTGTACACGCTGAGGAAGAGCTTATCGGATCCCGATAACGTGCTGCAGAGCTGGGATCCCACGCTCGTCAACCCCTGCACTTGGTTCCACATCACCTGCAACCAGGACAATCGCGTTACCCGACTGGATTTAGGTAATTCTAACCTCTCTGGACATCTGGTACCTGAACTTGGAAAACTTGAGCATCTTCAATATCTGGAGCTATACAGAAATAATATTCAGGGAACTATTCCAGCTGAGCTTGGTAACCTGAAGAGCCTCGTTAGCTTGGACTTATATAACAACAACATATCAGGGACAATTCCTCCTTCATTGGGGAAATTGAAATCACTTGTGTTCTTACGTCTCAATGAAAACAGGTTAAGTGGGCCAATCCCCAGGGATCTCGTTGGTCTTGCAAGCCTCAAAGTTGTGGATGTATCGAGCAATGATTTGTGCGGAACAATTCCTACCAGTGGACCATTTGAGCACATTCCTTTGAGCAACTTTGAGAACAACCATCGACTTGAAGGTCCGGAGTTGTTGGGGCTTGCAAGCTACGACACCAACTGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

215

Amino Acids

23.61

Weight (kDa)

5.49

Isoelectric Point (pI)

24.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	25 - 64	1.6e-11	Leucine rich repeat N-terminal domain
LRR_8	PF13855	68 - 127	7.5e-07	Leucine rich repeat
LRR_14	PF23598	72 - 170	6.6e-15	Leucine-rich repeat region
LRR_4	PF12799	92 - 132	3.5e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
AasI	GACNNNNNNGTC	1 cut(s)	600
Acc36I	ACCTGC	1 cut(s)	194
Acc65I	GGTACC	1 cut(s)	250
AccB1I	GGYRCC	1 cut(s)	250
AccII	CGCG	2 cut(s)	69, 204
AccIII	TCCGGA	1 cut(s)	604
AciI	CCGC	3 cut(s)	11, 69, 528
AclWI	GGATC	5 cut(s)	113, 126, 140, 153, 480
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	2 cut(s)	95, 252
AfiI	CCNNNNNNNGG	4 cut(s)	171, 260, 404, 545
AgsI	TTSAA	3 cut(s)	281, 415, 599
AjnI	CCWGG	2 cut(s)	192, 467
AluBI	AGCT	7 cut(s)	111, 141, 292, 326, 331, 357, 627
AluI	AGCT	7 cut(s)	111, 141, 292, 326, 331, 357, 627
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	5 cut(s)	113, 126, 140, 153, 480
Aor13HI	TCCGGA	1 cut(s)	604
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	1 cut(s)	133
Asp718I	GGTACC	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	3 cut(s)	458, 548, 602
AsuHPI	GGTGA	1 cut(s)	175
AvaII	GGWCC	2 cut(s)	548, 602
BamHI	GGATCC	2 cut(s)	118, 145
BanI	GGYRCC	1 cut(s)	250
BauI	CACGAG	1 cut(s)	643
Bbv12I	GWGCWC	1 cut(s)	561
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	1 cut(s)	597
BciT130I	CCWGG	2 cut(s)	194, 469
BcoDI	GTCTC	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	194
BisI	GCNGC	2 cut(s)	12, 134
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	2 cut(s)	13, 135
Bme1390I	CCNGG	2 cut(s)	194, 469
Bme18I	GGWCC	2 cut(s)	548, 602
BmgT120I	GGNCC	3 cut(s)	458, 548, 602
BmiI	GGNNCC	4 cut(s)	120, 147, 176, 252
BmrFI	CCNGG	2 cut(s)	194, 469
BmsI	GCATC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	467, 468
BsaWI	WCCGGW	1 cut(s)	604
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 260, 404, 545
Bse1I	ACTGG	2 cut(s)	219, 543
Bse3DI	GCAATG	1 cut(s)	523
BseAI	TCCGGA	1 cut(s)	604
BseBI	CCWGG	2 cut(s)	194, 469
BseDI	CCNNGG	2 cut(s)	467, 468
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	4 cut(s)	171, 260, 404, 545
BseMI	GCAATG	1 cut(s)	523
BseMII	CTCAG	2 cut(s)	92, 318
BseNI	ACTGG	2 cut(s)	219, 543
BseXI	GCAGC	1 cut(s)	120
BseYI	CCCAGC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	69, 204
BshFI	GGCC	1 cut(s)	460
BshNI	GGYRCC	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	605
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	4 cut(s)	171, 260, 404, 545
BsmAI	GTCTC	1 cut(s)	440
BsmBI	CGTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	460
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp13I	TCCGGA	1 cut(s)	604
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	118, 145, 472
Bsp1720I	GCTNAGC	1 cut(s)	327
BspACI	CCGC	3 cut(s)	11, 69, 528
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	2 cut(s)	93, 319
BspEI	TCCGGA	1 cut(s)	604
BspFNI	CGCG	2 cut(s)	69, 204
BspLI	GGNNCC	4 cut(s)	120, 147, 176, 252
BspMAI	CTGCAG	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	5 cut(s)	113, 126, 140, 153, 480
BspQI	GCTCTTC	2 cut(s)	101, 338
BspT107I	GGYRCC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	523
BsrGI	TGTACA	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	219, 543
BssECI	CCNNGG	2 cut(s)	467, 468
BssMI	GATC	3 cut(s)	118, 145, 472
BssSI	CACGAG	1 cut(s)	643
Bst2BI	CACGAG	1 cut(s)	643
Bst2UI	CCWGG	2 cut(s)	194, 469
Bst6I	CTCTTC	2 cut(s)	101, 338
BstAUI	TGTACA	1 cut(s)	93
BstC8I	GCNNGC	3 cut(s)	490, 621, 625
BstDEI	CTNAG	3 cut(s)	41, 101, 327
BstEII	GGTNACC	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	2 cut(s)	69, 204
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	3 cut(s)	121, 148, 475
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	3 cut(s)	118, 145, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 354
BstNI	CCWGG	2 cut(s)	194, 469
BstPI	GGTNACC	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	192, 467
BstSFI	CTRYAG	1 cut(s)	134
BstUI	CGCG	2 cut(s)	69, 204
BstV1I	GCAGC	1 cut(s)	120
BstX2I	RGATCY	3 cut(s)	118, 145, 472
BstYI	RGATCY	3 cut(s)	118, 145, 472
BsuRI	GGCC	1 cut(s)	460
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	550
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	3 cut(s)	490, 621, 625
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	3 cut(s)	458, 548, 602
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	94, 251
CviQI	GTAC	2 cut(s)	94, 251
DdeI	CTNAG	3 cut(s)	41, 101, 327
DpnI	GATC	3 cut(s)	120, 147, 474
DpnII	GATC	3 cut(s)	118, 145, 472
DrdI	GACNNNNNNGTC	1 cut(s)	600
DseDI	GACNNNNNNGTC	1 cut(s)	600
Eam1104I	CTCTTC	2 cut(s)	101, 338
EarI	CTCTTC	2 cut(s)	101, 338
Eco47I	GGWCC	2 cut(s)	548, 602
Eco57I	CTGAAG	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	192, 467
Esp3I	CGTCTC	1 cut(s)	440
FaiI	YATR	4 cut(s)	295, 367, 369, 380
FaqI	GGGAC	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	12, 134
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	2 cut(s)	12, 134
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	2 cut(s)	12, 134
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	1 cut(s)	605
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	69
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	3 cut(s)	96, 160, 548
Hpy188I	TCNGA	3 cut(s)	79, 85, 118
Hpy188III	TCNNGA	5 cut(s)	122, 240, 287, 605, 645
Hpy8I	GTNNAC	3 cut(s)	96, 160, 548
HpyAV	CCTTC	2 cut(s)	408, 593
HpyCH4IV	ACGT	2 cut(s)	129, 433
HpyCH4V	TGCA	5 cut(s)	136, 168, 189, 488, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 354
HpyF3I	CTNAG	3 cut(s)	41, 101, 327
HpySE526I	ACGT	2 cut(s)	129, 433
HspAI	GCGC	1 cut(s)	67
Kpn2I	TCCGGA	1 cut(s)	604
KpnI	GGTACC	1 cut(s)	254
Kzo9I	GATC	3 cut(s)	118, 145, 472
LguI	GCTCTTC	2 cut(s)	101, 338
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	1 cut(s)	283
MaeII	ACGT	2 cut(s)	129, 433
MaeIII	GTNAC	3 cut(s)	71, 205, 335
MalI	GATC	3 cut(s)	120, 147, 474
MboI	GATC	3 cut(s)	118, 145, 472
MboII	GAAGA	3 cut(s)	118, 269, 355
MflI	RGATCY	3 cut(s)	118, 145, 472
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	4 cut(s)	226, 390, 410, 534
MnlI	CCTC	6 cut(s)	9, 96, 245, 359, 405, 503
MroI	TCCGGA	1 cut(s)	604
MseI	TTAA	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	2 cut(s)	194, 469
MvaI	CCWGG	2 cut(s)	194, 469
MvnI	CGCG	2 cut(s)	69, 204
MwoI	GCNNNNNNNGC	2 cut(s)	11, 354
NdeII	GATC	3 cut(s)	118, 145, 472
NlaIV	GGNNCC	4 cut(s)	120, 147, 176, 252
PaqCI	CACCTGC	1 cut(s)	194
PasI	CCCWGGG	1 cut(s)	468
PciSI	GCTCTTC	2 cut(s)	101, 338
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	13, 135
Psp6I	CCWGG	2 cut(s)	192, 467
PspEI	GGTNACC	1 cut(s)	335
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	2 cut(s)	192, 467
PspN4I	GGNNCC	4 cut(s)	120, 147, 176, 252
PspPI	GGNCC	3 cut(s)	458, 548, 602
PsrI	GAACNNNNNNTAC	2 cut(s)	523, 555
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	3 cut(s)	118, 145, 472
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	95, 252
RsaNI	GTAC	2 cut(s)	94, 251
SapI	GCTCTTC	2 cut(s)	101, 338
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	2 cut(s)	12, 134
Sau3AI	GATC	3 cut(s)	118, 145, 472
Sau96I	GGNCC	3 cut(s)	458, 548, 602
ScrFI	CCNGG	2 cut(s)	194, 469
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	134
SinI	GGWCC	2 cut(s)	548, 602
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	226, 390, 410, 534
SsiI	CCGC	3 cut(s)	11, 69, 528
SspI	AATATT	1 cut(s)	307
StyD4I	CCNGG	2 cut(s)	192, 467
TaiI	ACGT	2 cut(s)	132, 436
TaqI	TCGA	2 cut(s)	512, 592
TasI	AATT	4 cut(s)	226, 390, 410, 534
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	1 cut(s)	550
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	390, 456
TspRI	CASTG	1 cut(s)	550
VpaK11BI	GGWCC	2 cut(s)	548, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.