Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

44127955 .. 44131551

Gene Structure 3597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGGCGAGGTTTTGGTTGTTGAGCCTAACCCTAAGTGTAAGCGTGGTTGGGTTGGTGTACGGTAACTCGGAATCAGACGCTTTGTACACGCTGAGGAAGAGCTTATCGGATCCCGATAACGTGCTGCAGAGCTGGGATCCCACGCTCGTCAACCCCTGCACTTGGTTCCACATCACCTGCAACCAGGACAATCGCGTTACCCGACTGGATTTAGGTAATTCAAACCTCTCTGGACATCTGGTACCTGAACTTGGAAAGCTTGAACATCTTCAATATCTGGAGCTTTACAGAAATAATATTCAGGGAACTATTCCAGCTGAGCTTGGTAACCTGAAGAGCCTCATTAGCTTGGACTTATATAACAACAACATATCAGGGACAATTCCTCCTTCATTGGGGAAATTGAAATCACTTGTGTTCTTACGTCTCAATGACAACAGATTAAGTGGGCCAATCCCCAGGGATCTCGTTGGTCTTGCAAGCCTCAAAGTTGTGGATGTATCGAGCAATGATTTGTGTGGAACAATTCCTACCAGTGGACCATTTGAGCACATTCCTCTGAGCAACTTTGAGAACAACCATCGACTTGAAGGTCCGGAGTTGTTGGGGCTTGCAAGTTACGACACCAACTGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

213

Amino Acids

23.41

Weight (kDa)

5.28

Isoelectric Point (pI)

23.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	23 - 62	1.6e-11	Leucine rich repeat N-terminal domain
LRR_8	PF13855	66 - 125	7.5e-06	Leucine rich repeat
LRR_14	PF23598	70 - 168	1.3e-14	Leucine-rich repeat region
LRR_8	PF13855	90 - 149	2.7e-07	Leucine rich repeat
LRR_4	PF12799	90 - 130	4.9e-06	Leucine Rich repeats (2 copies)
LRR_4	PF12799	113 - 149	4.3e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
AasI	GACNNNNNNGTC	1 cut(s)	594
Acc36I	ACCTGC	1 cut(s)	188
Acc65I	GGTACC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	244
AccII	CGCG	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	598
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	5 cut(s)	107, 120, 134, 147, 474
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	3 cut(s)	62, 89, 246
AfiI	CCNNNNNNNGG	4 cut(s)	165, 254, 398, 539
AgsI	TTSAA	5 cut(s)	225, 266, 275, 409, 593
AjnI	CCWGG	2 cut(s)	186, 461
AluBI	AGCT	7 cut(s)	105, 135, 262, 286, 320, 325, 351
AluI	AGCT	7 cut(s)	105, 135, 262, 286, 320, 325, 351
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	5 cut(s)	107, 120, 134, 147, 474
Aor13HI	TCCGGA	1 cut(s)	598
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	1 cut(s)	127
Asp700I	GAANNNNTTC	1 cut(s)	270
Asp718I	GGTACC	1 cut(s)	244
AspS9I	GGNCC	3 cut(s)	452, 542, 596
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	2 cut(s)	542, 596
BamHI	GGATCC	2 cut(s)	112, 139
BanI	GGYRCC	1 cut(s)	244
BauI	CACGAG	1 cut(s)	637
Bbv12I	GWGCWC	1 cut(s)	555
BbvCI	CCTCAGC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	591
BciT130I	CCWGG	2 cut(s)	188, 463
BcoDI	GTCTC	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	6, 128
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	2 cut(s)	7, 129
Bme1390I	CCNGG	2 cut(s)	188, 463
Bme18I	GGWCC	2 cut(s)	542, 596
BmgT120I	GGNCC	3 cut(s)	452, 542, 596
BmiI	GGNNCC	4 cut(s)	114, 141, 170, 246
BmrFI	CCNGG	2 cut(s)	188, 463
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	95
Bpu1102I	GCTNAGC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	461, 462
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	4 cut(s)	165, 254, 398, 539
Bse1I	ACTGG	2 cut(s)	213, 537
Bse3DI	GCAATG	1 cut(s)	517
BseAI	TCCGGA	1 cut(s)	598
BseBI	CCWGG	2 cut(s)	188, 463
BseDI	CCNNGG	2 cut(s)	461, 462
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	4 cut(s)	165, 254, 398, 539
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	3 cut(s)	86, 312, 554
BseNI	ACTGG	2 cut(s)	213, 537
BseXI	GCAGC	1 cut(s)	114
BseYI	CCCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	454
BshNI	GGYRCC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	599
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	4 cut(s)	165, 254, 398, 539
BsmAI	GTCTC	1 cut(s)	434
BsmBI	CGTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp13I	TCCGGA	1 cut(s)	598
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	112, 139, 466
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	454
BspCNI	CTCAG	3 cut(s)	87, 313, 555
BspEI	TCCGGA	1 cut(s)	598
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	4 cut(s)	114, 141, 170, 246
BspMAI	CTGCAG	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	5 cut(s)	107, 120, 134, 147, 474
BspQI	GCTCTTC	2 cut(s)	95, 332
BspT107I	GGYRCC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	517
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	213, 537
BssECI	CCNNGG	2 cut(s)	461, 462
BssMI	GATC	3 cut(s)	112, 139, 466
BssSI	CACGAG	1 cut(s)	637
Bst2BI	CACGAG	1 cut(s)	637
Bst2UI	CCWGG	2 cut(s)	188, 463
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	2 cut(s)	95, 332
BstAUI	TGTACA	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	484, 615
BstDEI	CTNAG	4 cut(s)	35, 95, 321, 563
BstEII	GGTNACC	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	505
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	3 cut(s)	115, 142, 469
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	3 cut(s)	112, 139, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstNI	CCWGG	2 cut(s)	188, 463
BstPI	GGTNACC	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	186, 461
BstSFI	CTRYAG	1 cut(s)	128
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	114
BstX2I	RGATCY	3 cut(s)	112, 139, 466
BstYI	RGATCY	3 cut(s)	112, 139, 466
BsuRI	GGCC	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	544
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	484, 615
Cfr13I	GGNCC	3 cut(s)	452, 542, 596
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	3 cut(s)	61, 88, 245
CviQI	GTAC	3 cut(s)	61, 88, 245
DdeI	CTNAG	4 cut(s)	35, 95, 321, 563
DpnI	GATC	3 cut(s)	114, 141, 468
DpnII	GATC	3 cut(s)	112, 139, 466
DrdI	GACNNNNNNGTC	1 cut(s)	594
DseDI	GACNNNNNNGTC	1 cut(s)	594
Eam1104I	CTCTTC	2 cut(s)	95, 332
EarI	CTCTTC	2 cut(s)	95, 332
Eco47I	GGWCC	2 cut(s)	542, 596
Eco57I	CTGAAG	1 cut(s)	356
Eco91I	GGTNACC	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	186, 461
Esp3I	CGTCTC	1 cut(s)	434
FaiI	YATR	3 cut(s)	361, 363, 374
FaqI	GGGAC	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	6, 128
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	2 cut(s)	6, 128
GluI	GCNGC	2 cut(s)	6, 128
GsaI	CCCAGC	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	1 cut(s)	599
HgaI	GACGC	1 cut(s)	89
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	599
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	4 cut(s)	61, 90, 154, 542
Hpy188I	TCNGA	4 cut(s)	73, 79, 112, 564
Hpy188III	TCNNGA	5 cut(s)	116, 234, 281, 599, 639
Hpy8I	GTNNAC	4 cut(s)	61, 90, 154, 542
HpyAV	CCTTC	2 cut(s)	402, 587
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	2 cut(s)	123, 427
HpyCH4V	TGCA	5 cut(s)	130, 162, 183, 482, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpyF3I	CTNAG	4 cut(s)	35, 95, 321, 563
HpySE526I	ACGT	2 cut(s)	123, 427
Kpn2I	TCCGGA	1 cut(s)	598
KpnI	GGTACC	1 cut(s)	248
Kzo9I	GATC	3 cut(s)	112, 139, 466
LguI	GCTCTTC	2 cut(s)	95, 332
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	1 cut(s)	114
MaeII	ACGT	2 cut(s)	123, 427
MaeIII	GTNAC	4 cut(s)	65, 199, 329, 620
MalI	GATC	3 cut(s)	114, 141, 468
MboI	GATC	3 cut(s)	112, 139, 466
MboII	GAAGA	3 cut(s)	112, 263, 349
MflI	RGATCY	3 cut(s)	112, 139, 466
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	4 cut(s)	220, 384, 404, 528
MnlI	CCTC	7 cut(s)	3, 90, 239, 353, 399, 497, 570
MroI	TCCGGA	1 cut(s)	598
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	599
MspR9I	CCNGG	2 cut(s)	188, 463
MvaI	CCWGG	2 cut(s)	188, 463
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	348
NdeII	GATC	3 cut(s)	112, 139, 466
NlaIV	GGNNCC	4 cut(s)	114, 141, 170, 246
PaqCI	CACCTGC	1 cut(s)	188
PasI	CCCWGGG	1 cut(s)	462
PciSI	GCTCTTC	2 cut(s)	95, 332
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	7, 129
Psp6I	CCWGG	2 cut(s)	186, 461
PspEI	GGTNACC	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	2 cut(s)	186, 461
PspN4I	GGNNCC	4 cut(s)	114, 141, 170, 246
PspPI	GGNCC	3 cut(s)	452, 542, 596
PsrI	GAACNNNNNNTAC	2 cut(s)	517, 549
PstI	CTGCAG	1 cut(s)	132
PsuI	RGATCY	3 cut(s)	112, 139, 466
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	3 cut(s)	62, 89, 246
RsaNI	GTAC	3 cut(s)	61, 88, 245
SapI	GCTCTTC	2 cut(s)	95, 332
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	2 cut(s)	6, 128
Sau3AI	GATC	3 cut(s)	112, 139, 466
Sau96I	GGNCC	3 cut(s)	452, 542, 596
ScrFI	CCNGG	2 cut(s)	188, 463
SduI	GDGCHC	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	128
SinI	GGWCC	2 cut(s)	542, 596
Sse9I	AATT	4 cut(s)	220, 384, 404, 528
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	186, 461
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	2 cut(s)	126, 430
TaqI	TCGA	2 cut(s)	506, 586
TasI	AATT	4 cut(s)	220, 384, 404, 528
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	1 cut(s)	544
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	2 cut(s)	542, 596
XmnI	GAANNNNTTC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.