Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

24131151 .. 24131561

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG208600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGATCCACATAACGTGCTCCAAAGCTGGGATGCCAACATTATCACACCCTACAGTACCAGCTGGTTTGGTATTAGGTGCAACCAAGACAATAAGGTTTTTGTAGTCGACTTACGTAGCGCAATCCTATCTGGAAATCTAGTACCTGAACTCGGACTGCTTCTAACTTTAAAATATTTGAGATTGGGTCAAAATAATATTGCAAGAACCATTCCAACTGAGCTTGGTAACCTGAAGAGTCGCAACGTACTCGACTTGCATAACAACAAATTAACAGGGAAAGTTCCCTCCCAAATTACAAACATTCCAGACCTTGTATTAGCAAACATTGAGAACAACAATAATTTATGTTGGGACTTTTGGCCCACACGAGTGTTTAAAGGTCGTTCCAATTTACGCCAGAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002682 GO:0002684 GO:0002831 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009593 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009741 GO:0009742 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0010262 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0032101 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0040008 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043401 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045088 GO:0045089 GO:0046983 GO:0048316 GO:0048518 GO:0048545 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0140096 GO:1900150 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

136

Amino Acids

15.48

Weight (kDa)

9.56

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	35 - 113	2.4e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	3 cut(s)	58, 144, 249
AfiI	CCNNNNNNNGG	2 cut(s)	28, 152
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	3 cut(s)	27, 63, 223
AluI	AGCT	3 cut(s)	27, 63, 223
Alw21I	GWGCWC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	21
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 152
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	2 cut(s)	28, 152
BseMII	CTCAG	1 cut(s)	210
BseYI	CCCAGC	1 cut(s)	27
BshFI	GGCC	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	28, 152
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BssMI	GATC	1 cut(s)	4
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	230
BstBAI	YACGTR	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	219
BstEII	GGTNACC	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstPI	GGTNACC	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	52
BstSNI	TACGTA	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	37
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	363
Csp6I	GTAC	3 cut(s)	57, 143, 248
CviJI	RGCY	4 cut(s)	27, 63, 223, 364
CviKI_1	RGCY	4 cut(s)	27, 63, 223, 364
CviQI	GTAC	3 cut(s)	57, 143, 248
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DraI	TTTAAA	2 cut(s)	171, 379
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco105I	TACGTA	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	227
EcoO65I	GGTNACC	1 cut(s)	227
FaiI	YATR	3 cut(s)	12, 261, 349
FaqI	GGGAC	1 cut(s)	368
FblI	GTMKAC	1 cut(s)	108
FokI	GGATG	1 cut(s)	44
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	121
GsaI	CCCAGC	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	364
HhaI	GCGC	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	155
Hpy188III	TCNNGA	2 cut(s)	132, 308
Hpy8I	GTNNAC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	3 cut(s)	15, 115, 246
HpyCH4V	TGCA	3 cut(s)	81, 203, 259
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	3 cut(s)	15, 115, 246
HspAI	GCGC	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	8 cut(s)	13, 49, 73, 117, 159, 245, 261, 321
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	3 cut(s)	15, 115, 246
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	247
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	4 cut(s)	269, 294, 343, 391
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	1 cut(s)	298
MseI	TTAA	3 cut(s)	170, 272, 378
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	63
NdeII	GATC	1 cut(s)	4
NlaIV	GGNNCC	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	371
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
Ppu21I	YACGTR	1 cut(s)	116
PspEI	GGTNACC	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	363
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	63
RsaI	GTAC	3 cut(s)	58, 144, 249
RsaNI	GTAC	3 cut(s)	57, 143, 248
RseI	CAYNNNNRTG	1 cut(s)	371
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	170, 272, 378
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	363
SchI	GAGTC	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	21
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	371
SnaBI	TACGTA	1 cut(s)	116
Sse9I	AATT	4 cut(s)	269, 294, 343, 391
SspI	AATATT	2 cut(s)	176, 199
SspMI	CTAG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	3 cut(s)	18, 118, 249
TaqI	TCGA	2 cut(s)	108, 252
TasI	AATT	4 cut(s)	269, 294, 343, 391
Tru1I	TTAA	3 cut(s)	170, 272, 378
Tru9I	TTAA	3 cut(s)	170, 272, 378
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.