Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Reverse (-)

20576035 .. 20581609

Gene Structure 5575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001776

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTTCTCCGCGACCAAGGCCTCGCTGATTCTTCTACTCTTCGGCTTTCTTCAGCTACTCGTTAAGGTCTACGCCAACGTCGAAGGTGACGCATTGAATGCCTTGAAGAGCAGTTTGGCTGATCCTAACAATGTTCTCCAGAGTTGGGATCCTACTCTGGTCAATCCCTGCACATGGCTCCATGTCACTTGCAATTCCGAAAACAGCGTTAACAGAGTTGATCTTGGCAATGCTAATCTCTCCGGTAGCCTGGTGACGCAGCTCGGCGTGCTTACCAATTTACAGTACTTGGAACTTTATAGTAATAACATAACTGGTAATATTCCAACCGAGCTTGGCAGTTTGGACAACCTGGTGAGCTTGGATCTTTACTCGAACAATTTAGATGGTGAAATTCCATCCTCACTTGGCAACCTTGAAAAGCTGCGTTTCCTGCGTCTCAACAACAATACCTTGAGGGGGGAAATTCCCAGAACGCTGACTAAGATTGCATCATTGCAAGTCCTGGATCTTTCAAACAACAATCTTACTGGAGATATTCCGGTCAATGGTTCTTTTTCACTCTTTACTCCCATCAGTTTTCAAAATAATCCTCATCTGAAGGCTCTTCCAGTCACTCCAACTCCTCCTGCTCCTCCAAGCGCAAATCCTATTTCAGATTTGAAGTTGAATCCTCCAACTTGCTTGAAAAAGCTAGCATTTGCACAGGTATCAGTTCCACAAAATATGGACGCAGAAGGAAATTCTTGGGATCTGGAATTGACGCCTAATACTTTCGGAAAGGTCATTATTTTCATGAGTTCTCTTGCTGTCGATCCTGACAGGATTATATCAACGCCCTGTAATCATTACGGCTGCCACGAAGCCTGCTGGAACATCTTGCCAAGTTATATCAAAGCTTCTCTCATTCATGCTGCTGTGGAAAGGGTTTGTGTTGAGGACTTGTTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

318

Amino Acids

34.52

Weight (kDa)

4.97

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 65	2.7e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	78 - 173	2.6e-13	Leucine-rich repeat region
LRR_8	PF13855	117 - 176	3.6e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	11
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	7 cut(s)	116, 143, 156, 372, 516, 759, 809
AcsI	RAATTY	3 cut(s)	393, 465, 742
AcuI	CTGAAG	2 cut(s)	35, 620
AcyI	GRCGYC	1 cut(s)	764
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	4 cut(s)	145, 174, 459, 548
AgsI	TTSAA	8 cut(s)	97, 106, 419, 516, 584, 664, 670, 688
AjnI	CCWGG	3 cut(s)	249, 351, 504
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	7 cut(s)	55, 262, 334, 360, 424, 694, 899
AluI	AGCT	7 cut(s)	55, 262, 334, 360, 424, 694, 899
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	7 cut(s)	116, 143, 156, 372, 516, 759, 809
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	4 cut(s)	259, 424, 855, 914
ApoI	RAATTY	3 cut(s)	393, 465, 742
AspLEI	GCGC	1 cut(s)	644
AsuHPI	GGTGA	4 cut(s)	98, 265, 367, 401
AsuNHI	GCTAGC	1 cut(s)	694
BamHI	GGATCC	1 cut(s)	148
BbvI	GCAGC	4 cut(s)	271, 411, 842, 901
BccI	CCATC	3 cut(s)	380, 406, 581
BceAI	ACGGC	1 cut(s)	868
BciT130I	CCWGG	3 cut(s)	251, 353, 506
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	1 cut(s)	695
BisI	GCNGC	4 cut(s)	260, 425, 856, 915
BlsI	GCNGC	4 cut(s)	261, 426, 857, 916
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	3 cut(s)	251, 353, 506
BmiI	GGNNCC	2 cut(s)	150, 179
BmrFI	CCNGG	3 cut(s)	251, 353, 506
BmsI	GCATC	1 cut(s)	500
BmtI	GCTAGC	1 cut(s)	698
BpmI	CTGGAG	2 cut(s)	122, 552
BpuEI	CTTGAG	1 cut(s)	475
BsaHI	GRCGYC	1 cut(s)	764
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	2 cut(s)	242, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	607, 637
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 174, 459, 548
Bse1I	ACTGG	3 cut(s)	319, 535, 611
Bse3DI	GCAATG	2 cut(s)	235, 494
BseBI	CCWGG	3 cut(s)	251, 353, 506
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	398
BseLI	CCNNNNNNNGG	4 cut(s)	145, 174, 459, 548
BseMI	GCAATG	2 cut(s)	235, 494
BseNI	ACTGG	3 cut(s)	319, 535, 611
BseRI	GAGGAG	2 cut(s)	615, 624
BseXI	GCAGC	4 cut(s)	271, 411, 842, 901
BsgI	GTGCAG	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	243, 542
BslI	CCNNNNNNNGG	4 cut(s)	145, 174, 459, 548
BsmAI	GTCTC	1 cut(s)	443
BsmBI	CGTCTC	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	20
Bsp143I	GATC	7 cut(s)	121, 148, 220, 364, 508, 751, 814
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	2 cut(s)	150, 179
BspOI	GCTAGC	1 cut(s)	698
BspPI	GGATC	7 cut(s)	116, 143, 156, 372, 516, 759, 809
BspQI	GCTCTTC	2 cut(s)	101, 612
BsrDI	GCAATG	2 cut(s)	235, 494
BsrI	ACTGG	3 cut(s)	319, 535, 611
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	7 cut(s)	121, 148, 220, 364, 508, 751, 814
BssNI	GRCGYC	1 cut(s)	764
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	3 cut(s)	251, 353, 506
Bst4CI	ACNGT	1 cut(s)	285
Bst6I	CTCTTC	3 cut(s)	44, 101, 612
BstACI	GRCGYC	1 cut(s)	764
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	269, 696, 868
BstDEI	CTNAG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	398
BstFNI	CGCG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	644
BstKTI	GATC	7 cut(s)	124, 151, 223, 367, 511, 754, 817
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	7 cut(s)	121, 148, 220, 364, 508, 751, 814
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 98, 268, 433
BstNI	CCWGG	3 cut(s)	251, 353, 506
BstSCI	CCNGG	3 cut(s)	249, 351, 504
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	4 cut(s)	271, 411, 842, 901
BstX2I	RGATCY	4 cut(s)	148, 364, 508, 751
BstYI	RGATCY	4 cut(s)	148, 364, 508, 751
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	398
Cac8I	GCNNGC	3 cut(s)	269, 696, 868
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	1 cut(s)	644
CseI	GACGC	5 cut(s)	98, 265, 425, 740, 772
CsiI	ACCWGGT	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	4 cut(s)	174, 182, 796, 911
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	7 cut(s)	123, 150, 222, 366, 510, 753, 816
DpnII	GATC	7 cut(s)	121, 148, 220, 364, 508, 751, 814
Eam1104I	CTCTTC	3 cut(s)	44, 101, 612
EarI	CTCTTC	3 cut(s)	44, 101, 612
Eco130I	CCWWGG	1 cut(s)	15
Eco147I	AGGCCT	1 cut(s)	20
Eco57I	CTGAAG	2 cut(s)	35, 620
EcoRII	CCWGG	3 cut(s)	249, 351, 504
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	4 cut(s)	177, 185, 799, 914
FaiI	YATR	9 cut(s)	175, 183, 300, 311, 728, 797, 830, 891, 912
FatI	CATG	4 cut(s)	173, 181, 795, 910
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	4 cut(s)	260, 425, 856, 915
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	4 cut(s)	260, 425, 856, 915
FspBI	CTAG	1 cut(s)	695
GlaI	GCGC	1 cut(s)	643
GluI	GCNGC	4 cut(s)	260, 425, 856, 915
GsuI	CTGGAG	2 cut(s)	122, 552
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	2 cut(s)	243, 542
HgaI	GACGC	5 cut(s)	98, 265, 425, 740, 772
HhaI	GCGC	1 cut(s)	644
Hin1I	GRCGYC	1 cut(s)	764
Hin1II	CATG	4 cut(s)	177, 185, 799, 914
Hin6I	GCGC	1 cut(s)	642
HinP1I	GCGC	1 cut(s)	642
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	897
HinfI	GANTC	2 cut(s)	28, 670
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	243, 542
HphI	GGTGA	4 cut(s)	98, 265, 367, 401
Hpy166II	GTNNAC	2 cut(s)	70, 211
Hpy188I	TCNGA	4 cut(s)	199, 600, 658, 779
Hpy188III	TCNNGA	4 cut(s)	139, 755, 796, 818
Hpy8I	GTNNAC	2 cut(s)	70, 211
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	3 cut(s)	77, 595, 731
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	5 cut(s)	171, 192, 491, 499, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 98, 268, 433
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	764
Hsp92II	CATG	4 cut(s)	177, 185, 799, 914
HspAI	GCGC	1 cut(s)	642
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	7 cut(s)	121, 148, 220, 364, 508, 751, 814
LguI	GCTCTTC	2 cut(s)	101, 612
LmnI	GCTCC	2 cut(s)	183, 637
Lsp1109I	GCAGC	4 cut(s)	271, 411, 842, 901
LweI	GCATC	1 cut(s)	500
MabI	ACCWGGT	1 cut(s)	351
MaeI	CTAG	1 cut(s)	695
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	4 cut(s)	86, 184, 253, 613
MalI	GATC	7 cut(s)	123, 150, 222, 366, 510, 753, 816
MboI	GATC	7 cut(s)	121, 148, 220, 364, 508, 751, 814
MboII	GAAGA	5 cut(s)	23, 31, 41, 118, 599
MflI	RGATCY	4 cut(s)	148, 364, 508, 751
MluCI	AATT	7 cut(s)	193, 277, 379, 393, 465, 742, 758
MmeI	TCCRAC	3 cut(s)	350, 644, 701
MnlI	CCTC	8 cut(s)	31, 412, 450, 603, 636, 645, 684, 931
MseI	TTAA	2 cut(s)	63, 210
MspI	CCGG	2 cut(s)	243, 542
MspR9I	CCNGG	3 cut(s)	251, 353, 506
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	3 cut(s)	251, 353, 506
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	17, 98, 268, 433
NdeII	GATC	7 cut(s)	121, 148, 220, 364, 508, 751, 814
NheI	GCTAGC	1 cut(s)	694
NlaIII	CATG	4 cut(s)	177, 185, 799, 914
NlaIV	GGNNCC	2 cut(s)	150, 179
NmeAIII	GCCGAG	1 cut(s)	243
NmuCI	GTSAC	4 cut(s)	86, 184, 253, 613
PagI	TCATGA	1 cut(s)	795
PceI	AGGCCT	1 cut(s)	20
PciSI	GCTCTTC	2 cut(s)	101, 612
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 858
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	28, 670
PfoI	TCCNGGA	1 cut(s)	504
PkrI	GCNGC	4 cut(s)	261, 426, 857, 916
Psp6I	CCWGG	3 cut(s)	249, 351, 504
PspGI	CCWGG	3 cut(s)	249, 351, 504
PspN4I	GGNNCC	2 cut(s)	150, 179
PsuI	RGATCY	4 cut(s)	148, 364, 508, 751
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SapI	GCTCTTC	2 cut(s)	101, 612
SaqAI	TTAA	2 cut(s)	63, 210
SatI	GCNGC	4 cut(s)	260, 425, 856, 915
Sau3AI	GATC	7 cut(s)	121, 148, 220, 364, 508, 751, 814
ScaI	AGTACT	1 cut(s)	287
ScrFI	CCNGG	3 cut(s)	251, 353, 506
SexAI	ACCWGGT	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	7 cut(s)	193, 277, 379, 393, 465, 742, 758
SseBI	AGGCCT	1 cut(s)	20
SsiI	CCGC	1 cut(s)	9
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	695
StuI	AGGCCT	1 cut(s)	20
StyD4I	CCNGG	3 cut(s)	249, 351, 504
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	285
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	81, 374, 813
TasI	AATT	7 cut(s)	193, 277, 379, 393, 465, 742, 758
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	28, 670
Tru1I	TTAA	2 cut(s)	63, 210
Tru9I	TTAA	2 cut(s)	63, 210
TseFI	GTSAC	4 cut(s)	86, 184, 253, 613
TseI	GCWGC	4 cut(s)	259, 424, 855, 914
Tsp45I	GTSAC	4 cut(s)	86, 184, 253, 613
TspDTI	ATGAA	2 cut(s)	784, 899
XapI	RAATTY	3 cut(s)	393, 465, 742
XmiI	GTMKAC	1 cut(s)	69
XspI	CTAG	1 cut(s)	695
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.