Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001737

Physical Location & Seq

Genomic Coordinates Forward (+)

24896777 .. 24897321

Gene Structure 545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCAATGGAGATAGCTCCGACTTGCTTGATGTCGTTTACCCTAATCCTTGCAAAAGCTTTACTTGCATTCAAGAAGAGATTAATGGATCCACATAACGTGCTCCAAAGCTGGGATGCCAACATTATCACACCCTACAGTACCTGGTTTGTCGACTTACGTAGCGCAATCCTATCTGGAAATCTAGTACGTGAACTCGGACTGCTTCTAACTTTAAAATATTTGAGATTGGGTCAAAATAATATTGCAAGAACCATTCCAACTGAGCTTGGTAACCTAAAGAGTCGCAACGTACTTGACTTGCATAACAACAAATTAACTGGGAAAGTTCCCTCCCAAATTGCAAACATTCCAGACCTTGTATTGGCAAACATTGAGAACAACAATAATTTATGTTGGGACTTTTGGCCCACACGAGTGTTTAAAGGTCGTTACAATTTACGCCAGAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0008219 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010008 GO:0010033 GO:0010200 GO:0010243 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060089 GO:0060548 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1900140 GO:1901564 GO:1901698 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

151

Amino Acids

17.23

Weight (kDa)

9.88

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	60 - 128	3.3e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43740 AT3G43740 AT5G21090
fragaria_vesca	FvH4_3g14800 FvH4_3g14810 FvH4_3g14820 FvH4_3g17980 FvH4_3g18020 FvH4_3g18100 FvH4_3g27550
malus_domestica	MD11G1182200.v1.1
prunus_persica	Prupe.6G154900_v2.0.a1
pyrus_communis	pycom11g15710
rosa_chinensis	RchiOBHm_Chr4g0425121 RchiOBHm_Chr5g0024351 RchiOBHm_Chr5g0030061 RchiOBHm_Chr5g0049921
rosa_laevigata	RLG00000001776 RLG00000007397 RLG00000007401 RLG00000032794 RLG00000033241 RLG00000034665
rosa_multiflora	Rmu_co8267339.1_g000001 Rmu_co8518351.1_g000002 Rmu_sc0000333.1_g000069 Rmu_sc0003368.1_g000001 Rmu_ssc0000420.1_g000033
rosa_roxburghii	Rroxscaffold_1G00031390 Rroxscaffold_1G00054880 Rroxscaffold_1G00055800 Rroxscaffold_5G00367190
rosa_rugosa	Rorug04G0201800 Rorug05G0254200
rosa_samantha	Rh3CG306200 Rh4BG264000 Rh4CG275100 Rh4DG260100 Rh5AG174000 Rh5AG328600 Rh5BG170800 Rh5BG208600 Rh5DG213000 Rh7DG379000
rosa_wichuraiana	Rw4G022350 Rw5G015690 Rw5G019100 Rw5G031040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	153
AclWI	GGATC	2 cut(s)	83, 96
AfaI	GTAC	3 cut(s)	142, 189, 294
AfiI	CCNNNNNNNGG	2 cut(s)	112, 364
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	143
AleI	CACNNNNGTG	1 cut(s)	416
AluBI	AGCT	4 cut(s)	17, 59, 111, 268
AluI	AGCT	4 cut(s)	17, 59, 111, 268
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	2 cut(s)	83, 96
AlwNI	CAGNNNCTG	1 cut(s)	144
AoxI	GGCC	1 cut(s)	407
AseI	ATTAAT	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	408
BamHI	GGATCC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	145
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	145
BmrI	ACTGGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	330
BsaAI	YACGTR	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 364
Bse1I	ACTGG	1 cut(s)	325
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	2 cut(s)	112, 364
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	325
BseYI	CCCAGC	1 cut(s)	111
BshFI	GGCC	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	2 cut(s)	112, 364
BsmFI	GGGAC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	2 cut(s)	83, 96
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	325
BssMI	GATC	1 cut(s)	88
BssSI	CACGAG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	71
BstBAI	YACGTR	2 cut(s)	161, 191
BstDEI	CTNAG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	145
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	136
BstSNI	TACGTA	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	144
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	408
CsiI	ACCWGGT	1 cut(s)	143
Csp6I	GTAC	3 cut(s)	141, 188, 293
CviJI	RGCY	5 cut(s)	17, 59, 111, 268, 409
CviKI_1	RGCY	5 cut(s)	17, 59, 111, 268, 409
CviQI	GTAC	3 cut(s)	141, 188, 293
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DraI	TTTAAA	2 cut(s)	216, 424
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco105I	TACGTA	1 cut(s)	161
Eco91I	GGTNACC	1 cut(s)	272
EcoO65I	GGTNACC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	143
FaiI	YATR	3 cut(s)	96, 306, 394
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	413
FblI	GTMKAC	1 cut(s)	153
FokI	GGATG	1 cut(s)	128
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	1 cut(s)	166
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	409
HhaI	GCGC	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	1 cut(s)	283
Hpy166II	GTNNAC	3 cut(s)	39, 154, 194
Hpy188I	TCNGA	2 cut(s)	21, 200
Hpy188III	TCNNGA	3 cut(s)	73, 177, 353
Hpy8I	GTNNAC	3 cut(s)	39, 154, 194
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	4 cut(s)	99, 160, 190, 291
HpyCH4V	TGCA	5 cut(s)	53, 68, 248, 304, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	4 cut(s)	99, 160, 190, 291
HspAI	GCGC	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	22, 108
LpnPI	CCDG	6 cut(s)	97, 130, 157, 162, 306, 366
LweI	GCATC	1 cut(s)	106
MabI	ACCWGGT	1 cut(s)	143
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	4 cut(s)	99, 160, 190, 291
MaeIII	GTNAC	2 cut(s)	272, 431
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	88
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	4 cut(s)	314, 339, 388, 436
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	2 cut(s)	44, 284
MnlI	CCTC	1 cut(s)	343
MseI	TTAA	4 cut(s)	83, 215, 317, 423
MslI	CAYNNNNRTG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	145
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	90
OliI	CACNNNNGTG	1 cut(s)	416
PctI	GAATGC	1 cut(s)	68
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Ppu21I	YACGTR	2 cut(s)	161, 191
PshBI	ATTAAT	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	143
PspEI	GGTNACC	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	408
PstNI	CAGNNNCTG	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	3 cut(s)	142, 189, 294
RsaNI	GTAC	3 cut(s)	141, 188, 293
RseI	CAYNNNNRTG	1 cut(s)	416
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	4 cut(s)	83, 215, 317, 423
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	408
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	105
SexAI	ACCWGGT	1 cut(s)	143
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	416
SnaBI	TACGTA	1 cut(s)	161
Sse9I	AATT	4 cut(s)	314, 339, 388, 436
SspI	AATATT	2 cut(s)	221, 244
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	4 cut(s)	102, 163, 193, 294
TaqI	TCGA	1 cut(s)	153
TasI	AATT	4 cut(s)	314, 339, 388, 436
Tru1I	TTAA	4 cut(s)	83, 215, 317, 423
Tru9I	TTAA	4 cut(s)	83, 215, 317, 423
VspI	ATTAAT	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.